File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/152eb6a271af17680e0555f48a7480/.command.log
Size
7.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-0419d4-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/16d418d6423572e4347f4d753f4b71/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/152eb6a271af17680e0555f48a7480/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/152eb6a271af17680e0555f48a7480/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/93939ee88d652951d5e3ae34b49893/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
CREBBP--LINC02861
starfusion
arriba
PCCA--CLYBL
starfusion
arriba
MYH9--TXN2
starfusion
DDX19B--AC009060.2
starfusion
PNPLA7--ZMYND19
starfusion
arriba
FKBP5--SRPK1
starfusion
RNF111--MINDY2
starfusion
arriba
LGALS8--EDARADD
starfusion
arriba
RNF169--POLD3
starfusion
arriba
TBC1D22A--GRAMD4
starfusion
arriba
AL669831.1--SEPTIN14
starfusion
AC004943.2--WWOX
starfusion
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGA9
arriba
PCDHA10--PCDHA13
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA11--PCDHA13
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHAC1
arriba
WAPL--AL731569.1
arriba
WAPL--RPL7AP8
arriba
INO80--NUSAP1
arriba
PNPLA7--ARRDC1
arriba
HIVEP3--ESRRG
arriba
ATP13A4--OPA1
arriba

  0%|          | 0/34 [00:00<?, ?it/s]
Processing CREBBP--LINC02861:   0%|          | 0/34 [00:00<?, ?it/s]
Processing CREBBP--LINC02861:   3%|▎         | 1/34 [00:00<00:03,  9.11it/s]
Processing PCCA--CLYBL:   3%|▎         | 1/34 [00:00<00:03,  9.11it/s]      
Processing PCCA--CLYBL:   6%|▌         | 2/34 [00:00<00:03,  9.38it/s]
Processing MYH9--TXN2:   6%|▌         | 2/34 [00:00<00:03,  9.38it/s] 
Processing MYH9--TXN2:   9%|▉         | 3/34 [00:00<00:03,  9.48it/s]
Processing DDX19B--AC009060.2:   9%|▉         | 3/34 [00:00<00:03,  9.48it/s]
Processing DDX19B--AC009060.2:  12%|█▏        | 4/34 [00:00<00:03,  9.52it/s]
Processing PNPLA7--ZMYND19:  12%|█▏        | 4/34 [00:00<00:03,  9.52it/s]   
Processing PNPLA7--ZMYND19:  15%|█▍        | 5/34 [00:00<00:03,  9.55it/s]
Processing FKBP5--SRPK1:  15%|█▍        | 5/34 [00:00<00:03,  9.55it/s]   
Processing FKBP5--SRPK1:  18%|█▊        | 6/34 [00:00<00:02,  9.57it/s]
Processing RNF111--MINDY2:  18%|█▊        | 6/34 [00:00<00:02,  9.57it/s]
Processing RNF111--MINDY2:  21%|██        | 7/34 [00:00<00:02,  9.58it/s]
Processing LGALS8--EDARADD:  21%|██        | 7/34 [00:00<00:02,  9.58it/s]
Processing LGALS8--EDARADD:  24%|██▎       | 8/34 [00:00<00:02,  9.59it/s]
Processing RNF169--POLD3:  24%|██▎       | 8/34 [00:00<00:02,  9.59it/s]  
Processing RNF169--POLD3:  26%|██▋       | 9/34 [00:00<00:02,  9.55it/s]
Processing TBC1D22A--GRAMD4:  26%|██▋       | 9/34 [00:00<00:02,  9.55it/s]
Processing TBC1D22A--GRAMD4:  29%|██▉       | 10/34 [00:01<00:02,  9.58it/s]
Processing AL669831.1--SEPTIN14:  29%|██▉       | 10/34 [00:01<00:02,  9.58it/s]
Processing AL669831.1--SEPTIN14:  32%|███▏      | 11/34 [00:01<00:02,  9.59it/s]
Processing AC004943.2--WWOX:  32%|███▏      | 11/34 [00:01<00:02,  9.59it/s]    
Processing AC004943.2--WWOX:  35%|███▌      | 12/34 [00:01<00:02,  9.60it/s]
Processing PCDHGA5--PCDHGC5:  35%|███▌      | 12/34 [00:01<00:02,  9.60it/s]
Processing PCDHGA5--PCDHGC5:  38%|███▊      | 13/34 [00:01<00:02,  9.61it/s]
Processing PCDHGA5--PCDHGC4:  38%|███▊      | 13/34 [00:01<00:02,  9.61it/s]
Processing PCDHGA5--PCDHGC4:  41%|████      | 14/34 [00:01<00:02,  9.62it/s]
Processing PCDHGA5--PCDHGB6:  41%|████      | 14/34 [00:01<00:02,  9.62it/s]
Processing PCDHGA5--PCDHGB6:  44%|████▍     | 15/34 [00:01<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGC3:  44%|████▍     | 15/34 [00:01<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGC3:  47%|████▋     | 16/34 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA8:  47%|████▋     | 16/34 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA8:  50%|█████     | 17/34 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGB7:  50%|█████     | 17/34 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGB7:  53%|█████▎    | 18/34 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA10:  53%|█████▎    | 18/34 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA10:  56%|█████▌    | 19/34 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA11:  56%|█████▌    | 19/34 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA11:  59%|█████▉    | 20/34 [00:02<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA12:  59%|█████▉    | 20/34 [00:02<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA12:  62%|██████▏   | 21/34 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA9:  62%|██████▏   | 21/34 [00:02<00:01,  9.64it/s] 
Processing PCDHGA5--PCDHGA9:  65%|██████▍   | 22/34 [00:02<00:01,  9.64it/s]
Processing PCDHA10--PCDHA13:  65%|██████▍   | 22/34 [00:02<00:01,  9.64it/s]
Processing PCDHA10--PCDHA13:  68%|██████▊   | 23/34 [00:02<00:01,  9.64it/s]
Processing PCDHA10--PCDHAC2:  68%|██████▊   | 23/34 [00:02<00:01,  9.64it/s]
Processing PCDHA10--PCDHAC2:  71%|███████   | 24/34 [00:02<00:01,  9.65it/s]
Processing PCDHA10--PCDHAC1:  71%|███████   | 24/34 [00:02<00:01,  9.65it/s]
Processing PCDHA10--PCDHAC1:  74%|███████▎  | 25/34 [00:02<00:00,  9.65it/s]
Processing PCDHA11--PCDHA13:  74%|███████▎  | 25/34 [00:02<00:00,  9.65it/s]
Processing PCDHA11--PCDHA13:  76%|███████▋  | 26/34 [00:02<00:00,  9.65it/s]
Processing PCDHA11--PCDHAC2:  76%|███████▋  | 26/34 [00:02<00:00,  9.65it/s]
Processing PCDHA11--PCDHAC2:  79%|███████▉  | 27/34 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC1:  79%|███████▉  | 27/34 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC1:  82%|████████▏ | 28/34 [00:02<00:00,  9.65it/s]
Processing WAPL--AL731569.1:  82%|████████▏ | 28/34 [00:02<00:00,  9.65it/s]
Processing WAPL--AL731569.1:  85%|████████▌ | 29/34 [00:03<00:00,  9.65it/s]
Processing WAPL--RPL7AP8:  85%|████████▌ | 29/34 [00:03<00:00,  9.65it/s]   
Processing WAPL--RPL7AP8:  88%|████████▊ | 30/34 [00:03<00:00,  9.64it/s]
Processing INO80--NUSAP1:  88%|████████▊ | 30/34 [00:03<00:00,  9.64it/s]
Processing INO80--NUSAP1:  91%|█████████ | 31/34 [00:03<00:00,  9.63it/s]
Processing PNPLA7--ARRDC1:  91%|█████████ | 31/34 [00:03<00:00,  9.63it/s]
Processing PNPLA7--ARRDC1:  94%|█████████▍| 32/34 [00:03<00:00,  9.63it/s]
Processing HIVEP3--ESRRG:  94%|█████████▍| 32/34 [00:03<00:00,  9.63it/s] 
Processing HIVEP3--ESRRG:  97%|█████████▋| 33/34 [00:03<00:00,  9.63it/s]
Processing ATP13A4--OPA1:  97%|█████████▋| 33/34 [00:03<00:00,  9.63it/s]
Processing ATP13A4--OPA1: 100%|██████████| 34/34 [00:03<00:00,  9.63it/s]
Processing ATP13A4--OPA1: 100%|██████████| 34/34 [00:03<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory