File Info
- Filename
- aih-tih-sc-0419d4-R1_A23WJ53LT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/152eb6a271af17680e0555f48a7480/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.fusions.csv
- Size
- 8.5 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-0419d4-R1_A23WJ53LT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| CREBBP--LINC02861 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr16:3850297#chr16:3931721,reading-frame: out-of-frame,type: duplication,split_reads1: 4,split_reads2: 12,discordant_mates: 0,coverage1: 3001,coverage2: 44,confidence: high | position: chr16:3850297:-#chr16:3931721:-,junction_reads: 25,spanning_reads: 0,ffmp: 0.1316 | |
| PCCA--CLYBL | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr13:100273346#chr13:99858861,reading-frame: in-frame,type: duplication,split_reads1: 19,split_reads2: 2,discordant_mates: 0,coverage1: 1480,coverage2: 431,confidence: high | position: chr13:100273346:+#chr13:99858861:+,junction_reads: 21,spanning_reads: 0,ffmp: 0.1106 |
| MYH9--TXN2 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr22:36286718:-#chr22:36467917:-,junction_reads: 14,spanning_reads: 0,ffmp: 0.0737 | |
| DDX19B--AC009060.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:70317588:+#chr16:70202353:+,junction_reads: 14,spanning_reads: 0,ffmp: 0.0737 | ||
| PNPLA7--ZMYND19 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:137501650#chr9:137598651,reading-frame: out-of-frame,type: duplication,split_reads1: 10,split_reads2: 2,discordant_mates: 0,coverage1: 1507,coverage2: 7,confidence: high | position: chr9:137501650:-#chr9:137588718:-,junction_reads: 13,spanning_reads: 0,ffmp: 0.0684 | |
| FKBP5--SRPK1 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr6:35688804:-#chr6:35835488:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0632 | |
| RNF111--MINDY2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:58988068#chr15:58810230,reading-frame: .,type: duplication,split_reads1: 1,split_reads2: 9,discordant_mates: 0,coverage1: 52,coverage2: 489,confidence: high | position: chr15:58988068:+#chr15:58810230:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0579 | |
| LGALS8--EDARADD | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr1:236537585#chr1:236409216,reading-frame: out-of-frame,type: duplication,split_reads1: 8,split_reads2: 3,discordant_mates: 0,coverage1: 1528,coverage2: 604,confidence: high | position: chr1:236537585:+#chr1:236409216:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0579 |
| RNF169--POLD3 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr11:74789699#chr11:74594061,reading-frame: in-frame,type: duplication,split_reads1: 6,split_reads2: 4,discordant_mates: 0,coverage1: 613,coverage2: 537,confidence: high | position: chr11:74789699:+#chr11:74594061:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.0527 |
| TBC1D22A--GRAMD4 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr22:47111603#chr22:46626751,reading-frame: out-of-frame,type: duplication,split_reads1: 8,split_reads2: 1,discordant_mates: 0,coverage1: 648,coverage2: 417,confidence: high | position: chr22:47111603:+#chr22:46626751:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0474 |
| AL669831.1--SEPTIN14 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:727712:-#chr7:55796092:-,junction_reads: 9,spanning_reads: 1,ffmp: 0.0527 | ||
| AC004943.2--WWOX | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:72665333:+#chr16:78424870:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.0421 | ||
| PCDHGA5--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 33,discordant_mates: 0,coverage1: 1655,coverage2: 5859,confidence: high | ||
| PCDHGA5--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 33,discordant_mates: 0,coverage1: 1655,coverage2: 5859,confidence: high | ||
| PCDHGA5--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 33,discordant_mates: 0,coverage1: 1655,coverage2: 5859,confidence: high | ||
| PCDHGA5--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 33,discordant_mates: 0,coverage1: 1655,coverage2: 5859,confidence: high | ||
| PCDHGA5--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 33,discordant_mates: 0,coverage1: 1655,coverage2: 5859,confidence: high | ||
| PCDHGA5--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 33,discordant_mates: 0,coverage1: 1655,coverage2: 5859,confidence: high | ||
| PCDHGA5--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 33,discordant_mates: 0,coverage1: 1655,coverage2: 5859,confidence: high | ||
| PCDHGA5--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 33,discordant_mates: 0,coverage1: 1655,coverage2: 5859,confidence: high | ||
| PCDHGA5--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 33,discordant_mates: 0,coverage1: 1655,coverage2: 5859,confidence: high | ||
| PCDHGA5--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 33,discordant_mates: 0,coverage1: 1655,coverage2: 5859,confidence: high | ||
| PCDHA10--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 9,split_reads2: 20,discordant_mates: 0,coverage1: 677,coverage2: 1504,confidence: high | ||
| PCDHA10--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 9,split_reads2: 20,discordant_mates: 0,coverage1: 677,coverage2: 1504,confidence: high | ||
| PCDHA10--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 9,split_reads2: 20,discordant_mates: 0,coverage1: 677,coverage2: 1504,confidence: high | ||
| PCDHA11--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 14,split_reads2: 7,discordant_mates: 0,coverage1: 564,coverage2: 1504,confidence: high | ||
| PCDHA11--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 14,split_reads2: 7,discordant_mates: 0,coverage1: 564,coverage2: 1504,confidence: high | ||
| PCDHA11--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 14,split_reads2: 7,discordant_mates: 0,coverage1: 564,coverage2: 1504,confidence: high | ||
| WAPL--AL731569.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:86472208#chr10:86574699,reading-frame: out-of-frame,type: duplication,split_reads1: 12,split_reads2: 2,discordant_mates: 0,coverage1: 686,coverage2: 3,confidence: high | ||
| WAPL--RPL7AP8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:86472208#chr10:86574699,reading-frame: out-of-frame,type: duplication,split_reads1: 12,split_reads2: 2,discordant_mates: 0,coverage1: 686,coverage2: 3,confidence: high | ||
| INO80--NUSAP1 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr15:41069570#chr15:41356104,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 9,split_reads2: 3,discordant_mates: 0,coverage1: 529,coverage2: 194,confidence: high | |
| PNPLA7--ARRDC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:137501650#chr9:137598651,reading-frame: out-of-frame,type: duplication,split_reads1: 10,split_reads2: 2,discordant_mates: 0,coverage1: 1507,coverage2: 7,confidence: high | ||
| HIVEP3--ESRRG | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:41628749#chr1:216793421,reading-frame: .,type: inversion/5'-5',split_reads1: 5,split_reads2: 6,discordant_mates: 0,coverage1: 2196,coverage2: 21,confidence: high | ||
| ATP13A4--OPA1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:193448206#chr3:193647310,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 8,split_reads2: 1,discordant_mates: 0,coverage1: 2029,coverage2: 3,confidence: high |
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