File Info

Filename
aih-tih-sc-2ca847-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/c5c6ec3b4ced32b6e2232ad2d8c614/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:48:23
                             Started mapping on |	Jun 08 07:50:55
                                    Finished on |	Jun 08 08:22:23
       Mapping speed, Million of reads per hour |	319.54

                          Number of input reads |	167579466
                      Average input read length |	239
                                    UNIQUE READS:
                   Uniquely mapped reads number |	159725960
                        Uniquely mapped reads % |	95.31%
                          Average mapped length |	238.94
                       Number of splices: Total |	167219113
            Number of splices: Annotated (sjdb) |	165324433
                       Number of splices: GT/AG |	165667712
                       Number of splices: GC/AG |	1050417
                       Number of splices: AT/AC |	118081
               Number of splices: Non-canonical |	382903
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.03
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.58
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4898914
             % of reads mapped to multiple loci |	2.92%
        Number of reads mapped to too many loci |	192106
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	304226
       % of reads unmapped: too many mismatches |	0.18%
            Number of reads unmapped: too short |	1224398
                 % of reads unmapped: too short |	0.73%
                Number of reads unmapped: other |	137758
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	1963376
                            % of chimeric reads |	1.17%