File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/120ee1370bd5df672691ed4e9922a7/.command.log
Size
5.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-0992e4-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/120ee1370bd5df672691ed4e9922a7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/120ee1370bd5df672691ed4e9922a7/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/0d8cca938838c15a39f8f9fe22e379/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/3ac2986dc6bc7bb687d4be411cd56a/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
AKAP8--ZNF729
starfusion
arriba
PMS2P6--CCDC146
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
UPK3BL2--AC004951.3
starfusion
TVP23C--CDRT4
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
PCDHA4--PCDHAC2
arriba
STX16--NPEPL1
arriba
PPP4R1--RNMT
arriba
PPP4R1--MC5R
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
CRYZL2P--SEC16B
arriba
KLRC4--KLRK1
arriba
NPHP3--ACAD11
arriba

  0%|          | 0/25 [00:00<?, ?it/s]
Processing AKAP8--ZNF729:   0%|          | 0/25 [00:00<?, ?it/s]
Processing AKAP8--ZNF729:   4%|▍         | 1/25 [00:00<00:02,  9.26it/s]
Processing PMS2P6--CCDC146:   4%|▍         | 1/25 [00:00<00:02,  9.26it/s]
Processing PMS2P6--CCDC146:   8%|▊         | 2/25 [00:00<00:02,  9.48it/s]
Processing TLK2P1--AC110079.1:   8%|▊         | 2/25 [00:00<00:02,  9.48it/s]
Processing TLK2P1--AC110079.1:  12%|█▏        | 3/25 [00:00<00:02,  9.56it/s]
Processing TLK2--AC240565.1:  12%|█▏        | 3/25 [00:00<00:02,  9.56it/s]  
Processing TLK2--AC240565.1:  16%|█▌        | 4/25 [00:00<00:02,  9.60it/s]
Processing UPK3BL2--AC004951.3:  16%|█▌        | 4/25 [00:00<00:02,  9.60it/s]
Processing UPK3BL2--AC004951.3:  20%|██        | 5/25 [00:00<00:02,  9.62it/s]
Processing TVP23C--CDRT4:  20%|██        | 5/25 [00:00<00:02,  9.62it/s]      
Processing TVP23C--CDRT4:  24%|██▍       | 6/25 [00:00<00:01,  9.63it/s]
Processing PCDHA4--PCDHAC1:  24%|██▍       | 6/25 [00:00<00:01,  9.63it/s]
Processing PCDHA4--PCDHAC1:  28%|██▊       | 7/25 [00:00<00:01,  9.64it/s]
Processing PCDHA4--PCDHA13:  28%|██▊       | 7/25 [00:00<00:01,  9.64it/s]
Processing PCDHA4--PCDHA13:  32%|███▏      | 8/25 [00:00<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC2:  32%|███▏      | 8/25 [00:00<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC2:  36%|███▌      | 9/25 [00:00<00:01,  9.65it/s]
Processing STX16--NPEPL1:  36%|███▌      | 9/25 [00:00<00:01,  9.65it/s]  
Processing STX16--NPEPL1:  40%|████      | 10/25 [00:01<00:01,  9.65it/s]
Processing PPP4R1--RNMT:  40%|████      | 10/25 [00:01<00:01,  9.65it/s] 
Processing PPP4R1--RNMT:  44%|████▍     | 11/25 [00:01<00:01,  9.65it/s]
Processing PPP4R1--MC5R:  44%|████▍     | 11/25 [00:01<00:01,  9.65it/s]
Processing PPP4R1--MC5R:  48%|████▊     | 12/25 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  48%|████▊     | 12/25 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  52%|█████▏    | 13/25 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  52%|█████▏    | 13/25 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  56%|█████▌    | 14/25 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  56%|█████▌    | 14/25 [00:01<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGC5:  60%|██████    | 15/25 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  60%|██████    | 15/25 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  64%|██████▍   | 16/25 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  64%|██████▍   | 16/25 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  68%|██████▊   | 17/25 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  68%|██████▊   | 17/25 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  72%|███████▏  | 18/25 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  72%|███████▏  | 18/25 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  76%|███████▌  | 19/25 [00:01<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  76%|███████▌  | 19/25 [00:01<00:00,  9.65it/s] 
Processing PCDHGB2--PCDHGB7:  80%|████████  | 20/25 [00:02<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  80%|████████  | 20/25 [00:02<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  84%|████████▍ | 21/25 [00:02<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  84%|████████▍ | 21/25 [00:02<00:00,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  88%|████████▊ | 22/25 [00:02<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  88%|████████▊ | 22/25 [00:02<00:00,  9.65it/s]  
Processing CRYZL2P--SEC16B:  92%|█████████▏| 23/25 [00:02<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  92%|█████████▏| 23/25 [00:02<00:00,  9.65it/s]   
Processing KLRC4--KLRK1:  96%|█████████▌| 24/25 [00:02<00:00,  9.65it/s]
Processing NPHP3--ACAD11:  96%|█████████▌| 24/25 [00:02<00:00,  9.65it/s]
Processing NPHP3--ACAD11: 100%|██████████| 25/25 [00:02<00:00,  9.65it/s]
Processing NPHP3--ACAD11: 100%|██████████| 25/25 [00:02<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory