File Info
- Filename
- aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/120ee1370bd5df672691ed4e9922a7/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fusions.csv
- Size
- 5.9 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-0992e4-R1_A23WJ53LT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| AKAP8--ZNF729 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:15368235#chr19:22303758,reading-frame: stop-codon,type: inversion,split_reads1: 18,split_reads2: 17,discordant_mates: 0,coverage1: 984,coverage2: 63,confidence: high | position: chr19:15368235:-#chr19:22303758:+,junction_reads: 37,spanning_reads: 0,ffmp: 0.1246 | |
| PMS2P6--CCDC146 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:73097567#chr7:77236947,reading-frame: .,type: deletion,split_reads1: 9,split_reads2: 13,discordant_mates: 1,coverage1: 557,coverage2: 662,confidence: high | position: chr7:73097567:+#chr7:77236947:+,junction_reads: 28,spanning_reads: 1,ffmp: 0.0484 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 13,spanning_reads: 0,ffmp: 0.0401 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0074 | ||
| UPK3BL2--AC004951.3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:102540015:-#chr7:43973323:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.027 | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 95,split_reads2: 66,discordant_mates: 1,coverage1: 1015,coverage2: 468,confidence: high | |
| PCDHA4--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 44,split_reads2: 89,discordant_mates: 3,coverage1: 674,coverage2: 1307,confidence: high | ||
| PCDHA4--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 44,split_reads2: 89,discordant_mates: 3,coverage1: 674,coverage2: 1307,confidence: high | ||
| PCDHA4--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 44,split_reads2: 89,discordant_mates: 3,coverage1: 674,coverage2: 1307,confidence: high | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 52,split_reads2: 47,discordant_mates: 2,coverage1: 2262,coverage2: 459,confidence: high | ||
| PPP4R1--RNMT | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:9553322#chr18:13774157,reading-frame: out-of-frame,type: duplication,split_reads1: 81,split_reads2: 11,discordant_mates: 0,coverage1: 2012,coverage2: 16,confidence: high | ||
| PPP4R1--MC5R | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:9553322#chr18:13774157,reading-frame: out-of-frame,type: duplication,split_reads1: 81,split_reads2: 11,discordant_mates: 0,coverage1: 2012,coverage2: 16,confidence: high | ||
| PCDHGB2--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 29,discordant_mates: 0,coverage1: 448,coverage2: 13665,confidence: high | ||
| PCDHGB2--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 29,discordant_mates: 0,coverage1: 448,coverage2: 13665,confidence: high | ||
| PCDHGB2--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 29,discordant_mates: 0,coverage1: 448,coverage2: 13665,confidence: high | ||
| PCDHGB2--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 29,discordant_mates: 0,coverage1: 448,coverage2: 13665,confidence: high | ||
| PCDHGB2--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 29,discordant_mates: 0,coverage1: 448,coverage2: 13665,confidence: high | ||
| PCDHGB2--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 29,discordant_mates: 0,coverage1: 448,coverage2: 13665,confidence: high | ||
| PCDHGB2--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 29,discordant_mates: 0,coverage1: 448,coverage2: 13665,confidence: high | ||
| PCDHGB2--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 29,discordant_mates: 0,coverage1: 448,coverage2: 13665,confidence: high | ||
| PCDHGB2--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 29,discordant_mates: 0,coverage1: 448,coverage2: 13665,confidence: high | ||
| PCDHGB2--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 29,discordant_mates: 0,coverage1: 448,coverage2: 13665,confidence: high | ||
| CRYZL2P--SEC16B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:178026155#chr1:177968039,reading-frame: .,type: deletion/read-through,split_reads1: 1,split_reads2: 25,discordant_mates: 0,coverage1: 33,coverage2: 294,confidence: high | ||
| KLRC4--KLRK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:10407636#chr12:10388875,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 11,split_reads2: 12,discordant_mates: 1,coverage1: 82,coverage2: 125,confidence: high | ||
| NPHP3--ACAD11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:132681914#chr3:132644896,reading-frame: in-frame,type: deletion/read-through,split_reads1: 10,split_reads2: 9,discordant_mates: 0,coverage1: 475,coverage2: 677,confidence: high |
26 rows