File Info

Filename
run_level_intermediate.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/80dd0e047ab26aa9cb406b5223368c/run_level_intermediate.tsv
Size
2.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:RUN_LEVEL_INTERMEDIATE (run_level_qc)
Attempt

Content

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SAMPLE_ID SOURCE_QC ANALYTE PIPELINE_VERSION QC_METRIC VALUE METRIC_ORIGIN
RUN RNA rnafusion_3.0.2-gunknown CLUSTER_DENSITY 9457.29 bclconvert
RUN RNA rnafusion_3.0.2-gunknown READS_PASSING_FILTER_PERCENT 76.8892 bclconvert
RUN RNA rnafusion_3.0.2-gunknown Q30_RUN_WIDE_PERCENT 93.9637 bclconvert
RUN RNA rnafusion_3.0.2-gunknown OCCUPANCY_RATE 88.6902 bclconvert
RUN RNA rnafusion_3.0.2-gunknown YIELD_IN_GB 9472.488218758 bclconvert
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS 464646530 bclconvert
NTC_0001_0001_A23WJ53LT4_1 NTC RNA rnafusion_3.0.2-gunknown READS 57079 bclconvert
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 593424124.0 seqtools
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.945209 seqtools
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.973269 seqtools
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.047214 seqtools
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.026731 seqtools
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 309065374.0 seqtools
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 156947548.0 seqtools
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 15438100.0 seqtools
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 4310666.0 seqtools
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 286103172.0 star
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.004175 star
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 157.0 kallisto
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.017 kallisto
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 4.962 kallisto
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 63.73 contamination
NTC_0001_0001_A23WJ53LT4_1 NTC RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 3598.0 seqtools
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_ALL_RNA_FUSIONS 69 fusion
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_TRUE_RNA_FUSIONS 0 fusion
FFPE_HD789_01_RNA_13_A23WJ53LT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_FALSE_RNA_FUSIONS 69 fusion
28 rows