Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/2193e45d816af2ad63a75506238720/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/2b235dc81b639365553a98e4fb7e1e/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/952b59db1c868e1bae87a0e760f7d5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/952b59db1c868e1bae87a0e760f7d5/.command.run
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory