Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/47682aca1a1d5c539a8b9cd02483e8/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/e88594f32350066b61af12b2ff273c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/e88594f32350066b61af12b2ff273c/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 248181308
unpaired = 5267822
MERGED PAIRED END READS = 248181308
MATES PROCESSED = 501630438
TOTAL READS     = 253449130
DISTINCT READS  = 4.96037e+07
DISTINCT COUNTS = 1414
MAX COUNT       = 831810
COUNTS OF 1     = 1.15798e+07
MAX TERMS       = 100
OBSERVED COUNTS (831811)
1	11579821
2	7971539
3	6473098
4	5205002
5	4084296
6	3137743
7	2389610
8	1807810
9	1366169
10	1037946
11	795895
12	616855
13	481674
14	383182
15	308406
16	250864
17	206521
18	172765
19	144303
20	122862
21	105228
22	90835
23	78588
24	68921
25	60120
26	52798
27	46383
28	41442
29	36765
30	32544
31	29745
32	26200
33	24061
34	21526
35	19511
36	18109
37	16445
38	15160
39	13933
40	12995
41	11947
42	11233
43	10263
44	9706
45	9021
46	8408
47	7993
48	7474
49	7059
50	6701
51	6169
52	5696
53	5593
54	5202
55	4988
56	4670
57	4406
58	4179
59	3996
60	3759
61	3667
62	3397
63	3328
64	3085
65	2985
66	2908
67	2847
68	2573
69	2547
70	2337
71	2364
72	2282
73	2120
74	2089
75	1929
76	1921
77	1746
78	1787
79	1626
80	1707
81	1609
82	1492
83	1470
84	1455
85	1389
86	1342
87	1267
88	1270
89	1201
90	1077
91	1090
92	1068
93	1101
94	1034
95	1026
96	909
97	934
98	871
99	917
100	921
101	826
102	819
103	758
104	776
105	716
106	772
107	661
108	693
109	684
110	638
111	623
112	606
113	628
114	641
115	590
116	575
117	539
118	543
119	523
120	475
121	480
122	475
123	443
124	477
125	477
126	440
127	420
128	421
129	346
130	410
131	401
132	386
133	398
134	371
135	362
136	347
137	334
138	334
139	351
140	319
141	302
142	331
143	311
144	305
145	273
146	284
147	278
148	267
149	249
150	257
151	279
152	261
153	249
154	245
155	247
156	214
157	241
158	237
159	243
160	230
161	242
162	207
163	227
164	216
165	213
166	182
167	206
168	195
169	213
170	179
171	184
172	173
173	166
174	161
175	156
176	153
177	145
178	153
179	161
180	154
181	158
182	127
183	143
184	146
185	138
186	143
187	149
188	137
189	141
190	146
191	129
192	121
193	137
194	116
195	125
196	133
197	124
198	131
199	121
200	116
201	129
202	103
203	108
204	106
205	103
206	99
207	99
208	110
209	97
210	107
211	93
212	94
213	105
214	107
215	94
216	89
217	88
218	100
219	120
220	87
221	93
222	81
223	75
224	86
225	86
226	87
227	81
228	66
229	77
230	85
231	91
232	75
233	84
234	73
235	82
236	65
237	79
238	77
239	73
240	73
241	63
242	77
243	56
244	67
245	69
246	64
247	49
248	55
249	52
250	67
251	66
252	52
253	59
254	61
255	64
256	85
257	46
258	57
259	46
260	55
261	58
262	49
263	57
264	64
265	49
266	48
267	47
268	51
269	51
270	48
271	54
272	53
273	53
274	49
275	43
276	35
277	41
278	39
279	42
280	43
281	46
282	50
283	40
284	43
285	39
286	40
287	37
288	43
289	34
290	49
291	45
292	35
293	37
294	29
295	32
296	37
297	41
298	33
299	34
300	28
301	37
302	38
303	46
304	39
305	36
306	34
307	36
308	32
309	34
310	30
311	23
312	36
313	34
314	41
315	34
316	41
317	28
318	30
319	43
320	38
321	33
322	35
323	25
324	24
325	28
326	22
327	27
328	26
329	24
330	17
331	29
332	25
333	27
334	22
335	24
336	20
337	25
338	28
339	28
340	21
341	15
342	20
343	37
344	27
345	26
346	25
347	25
348	15
349	48
350	20
351	21
352	19
353	14
354	23
355	24
356	25
357	17
358	19
359	30
360	27
361	18
362	11
363	20
364	14
365	23
366	23
367	10
368	13
369	25
370	22
371	12
372	19
373	18
374	19
375	17
376	16
377	20
378	18
379	21
380	23
381	16
382	9
383	16
384	17
385	22
386	19
387	15
388	20
389	18
390	17
391	16
392	14
393	12
394	17
395	9
396	19
397	17
398	11
399	13
400	12
401	18
402	12
403	10
404	11
405	20
406	20
407	11
408	11
409	9
410	7
411	15
412	17
413	15
414	15
415	18
416	17
417	11
418	10
419	5
420	16
421	17
422	9
423	9
424	10
425	13
426	15
427	10
428	13
429	15
430	14
431	9
432	9
433	9
434	10
435	10
436	12
437	9
438	3
439	5
440	11
441	14
442	11
443	8
444	16
445	10
446	9
447	10
448	9
449	9
450	6
451	12
452	10
453	6
454	9
455	17
456	8
457	7
458	7
459	11
460	8
461	12
462	15
463	8
464	11
465	8
466	10
467	8
468	6
469	11
470	4
471	9
472	8
473	17
474	10
475	9
476	5
477	17
478	8
479	10
480	3
481	12
482	8
483	8
484	6
485	11
486	8
487	9
488	7
489	11
490	13
491	12
492	5
493	8
494	4
495	9
496	8
497	6
498	6
499	9
500	10
501	3
502	10
503	5
504	13
505	7
506	13
507	12
508	5
509	11
510	14
511	6
512	6
513	7
514	5
515	12
516	7
517	10
518	11
519	8
520	5
521	8
522	4
523	7
524	9
525	3
526	8
527	2
528	3
529	7
530	6
531	11
532	9
533	3
534	6
535	6
536	8
537	11
538	7
539	7
540	7
541	4
542	6
543	11
544	3
545	5
546	2
547	5
548	10
549	3
550	2
551	5
552	8
553	6
554	10
555	3
556	8
557	6
558	6
559	7
560	4
561	9
562	6
563	7
564	7
565	9
566	7
567	5
568	6
569	6
570	8
571	4
572	6
573	8
574	5
575	11
576	5
577	6
578	1
579	2
580	6
581	8
582	3
583	4
584	3
585	5
586	4
587	5
588	3
589	6
590	4
591	2
592	1
593	4
594	4
595	3
596	4
597	5
598	9
599	5
600	2
601	3
602	2
603	6
604	4
605	8
606	5
607	6
608	3
609	5
610	5
611	6
612	3
613	6
615	2
616	8
617	5
618	3
619	3
620	7
621	5
622	2
623	1
624	3
625	6
626	4
627	1
628	5
629	2
630	2
631	1
632	9
633	8
634	2
635	2
636	6
637	3
638	1
639	2
640	6
641	3
642	1
643	7
644	7
645	3
646	4
647	4
648	3
649	4
650	3
651	3
652	7
653	3
654	4
655	6
656	3
657	6
658	1
659	1
660	3
661	2
662	4
664	4
665	2
666	1
667	3
668	1
669	2
670	3
671	4
672	2
673	1
674	5
675	2
676	5
677	7
678	1
679	3
680	1
681	4
682	4
683	7
684	5
685	1
686	5
687	1
688	3
689	1
690	2
691	3
692	2
693	4
694	4
695	2
696	5
697	3
698	1
699	5
700	4
701	5
702	5
703	2
704	7
705	3
706	1
707	1
708	9
709	6
710	5
711	4
712	2
713	4
714	2
715	1
716	4
717	5
718	1
719	2
720	4
721	4
722	4
723	5
724	2
725	3
726	2
727	1
728	5
729	1
730	2
731	3
732	1
734	4
735	2
736	3
737	2
738	3
739	7
740	3
741	4
742	5
743	1
744	2
745	4
746	5
747	4
748	3
749	1
750	4
751	2
752	6
753	4
754	3
755	6
756	1
757	2
758	1
759	3
760	4
761	1
762	2
763	2
764	2
765	3
766	2
767	2
768	1
769	1
770	2
771	6
772	1
773	3
774	2
775	1
776	4
778	4
779	1
780	7
781	3
782	1
783	1
784	1
785	1
786	1
787	1
788	1
789	5
790	1
791	3
792	3
793	3
794	4
795	2
796	3
797	2
798	4
799	6
800	4
801	1
802	3
803	2
804	1
805	5
806	3
807	2
808	3
809	3
810	2
811	2
812	2
813	1
814	2
815	2
817	1
818	1
819	2
820	2
821	1
822	2
823	3
825	1
826	3
827	3
828	4
829	2
830	3
831	7
832	2
833	3
836	2
837	2
840	2
841	1
842	3
843	1
844	1
847	3
848	1
849	1
851	1
852	1
853	2
854	4
855	1
856	2
857	4
858	1
859	2
860	1
861	3
862	3
864	2
870	3
871	1
873	1
874	2
875	3
876	1
877	2
878	1
879	2
881	3
882	1
883	2
884	2
885	2
886	2
888	3
889	1
890	2
892	2
893	1
894	2
895	1
896	3
897	3
898	2
899	3
900	3
901	3
902	1
903	1
904	2
905	1
906	3
907	1
909	2
910	4
912	3
913	1
915	1
916	3
917	3
918	4
919	2
920	1
921	1
923	2
925	3
926	2
927	1
928	2
930	1
931	2
932	3
933	2
934	2
935	3
936	1
938	1
939	1
940	2
941	2
946	2
947	2
948	4
949	3
950	1
951	1
952	2
953	4
954	5
955	1
956	3
957	2
958	2
959	1
961	2
962	2
963	3
964	1
965	2
966	1
967	4
973	1
974	1
975	1
977	1
980	3
984	1
985	4
986	2
988	2
989	3
990	1
991	2
992	4
993	1
994	1
995	1
996	1
997	1
998	1
1000	2
1002	3
1005	1
1006	2
1007	1
1010	2
1011	1
1012	4
1013	1
1014	1
1015	1
1018	1
1019	2
1022	1
1023	2
1026	1
1028	1
1029	2
1030	1
1031	2
1032	1
1035	2
1039	1
1040	1
1041	2
1042	3
1044	1
1046	1
1047	2
1048	2
1050	1
1051	2
1052	1
1053	2
1056	3
1057	2
1059	1
1060	1
1061	1
1062	1
1063	2
1065	3
1068	3
1069	3
1070	2
1071	2
1074	2
1075	3
1076	1
1079	1
1080	1
1081	2
1085	1
1086	3
1088	1
1090	1
1091	2
1092	1
1094	1
1096	1
1097	1
1099	1
1102	1
1104	1
1106	2
1107	1
1109	1
1110	1
1111	2
1113	1
1115	1
1116	3
1118	1
1120	2
1122	2
1123	1
1124	1
1125	1
1126	3
1127	2
1131	1
1133	1
1135	1
1138	2
1139	1
1141	1
1142	2
1146	1
1147	1
1149	1
1150	2
1151	2
1153	1
1154	1
1155	1
1157	1
1159	2
1160	2
1161	2
1162	2
1163	2
1164	2
1165	1
1169	1
1172	1
1173	1
1175	1
1179	1
1181	1
1182	1
1183	1
1186	1
1187	1
1188	1
1190	1
1192	1
1193	1
1194	2
1200	1
1201	3
1203	2
1204	2
1205	1
1210	2
1211	1
1212	1
1214	1
1215	2
1217	1
1219	1
1220	2
1221	1
1222	1
1223	1
1224	1
1225	2
1234	1
1235	2
1236	1
1241	1
1242	2
1244	1
1245	1
1247	1
1248	2
1253	1
1255	1
1256	1
1259	2
1261	1
1262	1
1263	1
1268	1
1269	2
1270	1
1273	1
1277	1
1278	1
1281	1
1285	2
1286	1
1294	1
1295	2
1299	2
1304	1
1307	1
1309	1
1311	1
1313	1
1314	2
1316	2
1317	1
1319	2
1320	1
1323	1
1324	1
1327	1
1330	1
1334	1
1335	2
1337	1
1339	2
1342	1
1346	1
1347	1
1349	1
1352	1
1353	2
1354	1
1355	2
1356	1
1361	1
1363	2
1364	1
1365	1
1366	2
1367	2
1368	1
1372	1
1379	1
1380	1
1385	2
1388	2
1389	1
1392	1
1396	1
1399	1
1402	2
1403	1
1407	1
1411	1
1416	1
1418	1
1422	1
1427	2
1431	1
1439	1
1440	1
1441	1
1443	1
1446	1
1447	1
1451	1
1455	1
1461	1
1464	1
1466	1
1468	1
1470	1
1473	1
1476	2
1479	1
1481	1
1484	1
1486	1
1487	1
1492	1
1493	1
1503	1
1505	1
1508	2
1510	1
1518	1
1519	1
1521	1
1523	1
1533	2
1537	1
1539	1
1542	1
1543	1
1544	1
1546	1
1551	1
1561	2
1562	1
1565	1
1567	1
1570	2
1572	1
1576	1
1584	2
1592	2
1593	1
1596	1
1598	2
1609	2
1612	1
1620	1
1621	1
1622	1
1625	1
1634	1
1636	1
1642	1
1643	1
1648	1
1649	1
1651	1
1659	1
1662	1
1678	1
1681	1
1690	1
1694	2
1696	1
1697	1
1712	1
1713	1
1714	1
1720	1
1722	1
1723	1
1738	1
1743	1
1761	1
1768	1
1783	2
1790	2
1794	1
1796	1
1797	1
1807	1
1810	1
1812	2
1814	1
1819	1
1823	1
1825	1
1826	1
1829	1
1830	1
1835	1
1838	1
1845	1
1858	1
1867	1
1871	1
1872	1
1886	1
1891	1
1894	1
1900	1
1904	1
1906	1
1910	1
1914	1
1924	1
1935	1
1937	1
1974	1
1975	1
1981	1
1988	1
2000	1
2017	1
2023	1
2027	1
2030	1
2036	1
2075	1
2076	1
2082	1
2095	1
2099	1
2116	1
2130	1
2140	1
2143	1
2157	1
2161	2
2162	1
2163	1
2182	1
2193	1
2197	2
2206	1
2209	1
2218	1
2247	1
2251	1
2260	1
2262	1
2267	1
2269	1
2292	2
2302	2
2314	1
2341	1
2346	1
2361	1
2366	1
2385	1
2388	1
2404	1
2409	1
2414	1
2425	1
2426	1
2458	1
2459	2
2466	1
2481	1
2494	1
2517	1
2546	1
2548	1
2556	1
2564	1
2566	1
2582	1
2605	1
2652	2
2690	1
2715	1
2733	1
2741	1
2771	1
2783	1
2794	1
2803	1
2815	1
2826	1
2829	1
2833	1
2893	1
2899	1
2923	1
2957	1
2967	1
2988	1
3039	2
3040	1
3100	1
3154	1
3219	1
3227	1
3238	1
3246	1
3412	1
3414	1
3420	1
3431	1
3630	1
3668	1
3699	1
3710	1
3784	1
3897	1
4034	1
4055	1
4064	1
4070	1
4243	1
4299	1
4324	1
4416	1
4725	1
5081	1
5102	1
5123	1
5662	1
5784	1
5880	1
6058	1
6136	1
6203	1
6584	1
6644	1
6916	1
7405	1
7427	1
8057	1
8433	1
8628	1
8706	1
8972	1
9422	1
9634	1
13714	1
16534	1
21944	1
831810	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..........................._................................_....._...__
.................................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]