Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/47682aca1a1d5c539a8b9cd02483e8/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/f69a821ee8e6edcbd4a191680c6e67/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/f69a821ee8e6edcbd4a191680c6e67/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/86d6944c8bcf236ec9d71b3a03b96f/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1351d2-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (14469895) splicing reads. 232409 splicing junctions. 172430 known splicing junctions. 59979 novel splicing junctions.
sampling 10% (28939791) splicing reads. 272020 splicing junctions. 182879 known splicing junctions. 89141 novel splicing junctions.
sampling 15% (43409686) splicing reads. 295772 splicing junctions. 188018 known splicing junctions. 107754 novel splicing junctions.
sampling 20% (57879582) splicing reads. 311895 splicing junctions. 190950 known splicing junctions. 120945 novel splicing junctions.
sampling 25% (72349478) splicing reads. 323766 splicing junctions. 192928 known splicing junctions. 130838 novel splicing junctions.
sampling 30% (86819373) splicing reads. 332899 splicing junctions. 194410 known splicing junctions. 138489 novel splicing junctions.
sampling 35% (101289269) splicing reads. 339861 splicing junctions. 195412 known splicing junctions. 144449 novel splicing junctions.
sampling 40% (115759164) splicing reads. 345643 splicing junctions. 196206 known splicing junctions. 149437 novel splicing junctions.
sampling 45% (130229060) splicing reads. 350255 splicing junctions. 196813 known splicing junctions. 153442 novel splicing junctions.
sampling 50% (144698956) splicing reads. 354142 splicing junctions. 197342 known splicing junctions. 156800 novel splicing junctions.
sampling 55% (159168851) splicing reads. 357474 splicing junctions. 197784 known splicing junctions. 159690 novel splicing junctions.
sampling 60% (173638747) splicing reads. 360141 splicing junctions. 198123 known splicing junctions. 162018 novel splicing junctions.
sampling 65% (188108642) splicing reads. 362554 splicing junctions. 198448 known splicing junctions. 164106 novel splicing junctions.
sampling 70% (202578538) splicing reads. 364520 splicing junctions. 198706 known splicing junctions. 165814 novel splicing junctions.
sampling 75% (217048434) splicing reads. 366238 splicing junctions. 198905 known splicing junctions. 167333 novel splicing junctions.
sampling 80% (231518329) splicing reads. 367676 splicing junctions. 199075 known splicing junctions. 168601 novel splicing junctions.
sampling 85% (245988225) splicing reads. 368900 splicing junctions. 199206 known splicing junctions. 169694 novel splicing junctions.
sampling 90% (260458120) splicing reads. 369925 splicing junctions. 199330 known splicing junctions. 170595 novel splicing junctions.
sampling 95% (274928016) splicing reads. 370694 splicing junctions. 199422 known splicing junctions. 171272 novel splicing junctions.
sampling 100% (289397912) splicing reads. 371292 splicing junctions. 199487 known splicing junctions. 171805 novel splicing junctions.
null device 
          1