File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/e8c1474049a11daf67f65e3e56bd61/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-00d05f-R1_A23WJ53LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/ad7d4255de9d66ae48e21139deaefc/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/e8c1474049a11daf67f65e3e56bd61/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/e88c47953a7f0cd33d14ed88aae2c6/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/e8c1474049a11daf67f65e3e56bd61/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 248867449
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-00d05f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	248867449
Known Splicing Events:	246652848
Partial Novel Splicing Events:	1472085
Novel Splicing Events:	670631
Filtered Splicing Events:	71885

Total splicing  Junctions:	395294
Known Splicing Junctions:	246607
Partial Novel Splicing Junctions:	97511
Novel Splicing Junctions:	51176

===================================================================
Create BED file ...
Create Interact file ...