File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/8d0cc111a8da7ab26a068113f9639e/.command.err
Size
54.9 KB
Attempt
-ctat genome lib [/tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.giCvmxLxyL/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary
-sample contains 130047355 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir  -J /tmp/nxf.giCvmxLxyL/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.Chimeric.out.junction  -O /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.giCvmxLxyL/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=54545.45/min 
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[1360000], rate=71080.14/min -building interval tree based on /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=85714.29/min 
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[1350000], rate=56643.36/min -building interval tree based on /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=50000.00/min 
[20000], rate=63157.89/min 
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[1330000], rate=47415.33/min 
[1340000], rate=47183.10/min 
[1350000], rate=47175.31/min -building interval tree based on /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=100000.00/min 
[20000], rate=109090.91/min 
[30000], rate=112500.00/min 
[40000], rate=126315.79/min 
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[1300000], rate=40752.35/min 
[1310000], rate=40411.31/min 
[1320000], rate=40366.97/min 
[1330000], rate=40466.53/min 
[1340000], rate=40585.56/min 
[1350000], rate=40703.52/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 12000000.00 reads per min processed...  
 9000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 5000000.00 reads per min processed...  
 5142857.14 reads per min processed...  
 4666666.67 reads per min processed...  
 4800000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4615384.62 reads per min processed...  
 4400000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4333333.33 reads per min processed...  
 4200000.00 reads per min processed...  
 4285714.29 reads per min processed...  
 4173913.04 reads per min processed...  
 4080000.00 reads per min processed...  
 4000000.00 reads per min processed...  
 3931034.48 reads per min processed...  
 4000000.00 reads per min processed...  
 3937500.00 reads per min processed...  
 4000000.00 reads per min processed...  
 3942857.14 reads per min processed...  
 4000000.00 reads per min processed...  
 3947368.42 reads per min processed...  
 4000000.00 reads per min processed...  
 3951219.51 reads per min processed...  
 4000000.00 reads per min processed...  
 4046511.63 reads per min processed...  
 4186046.51 reads per min processed...  
 4227272.73 reads per min processed...  
 4266666.67 reads per min processed...  
 4212765.96 reads per min processed...  
 4163265.31 reads per min processed...  
 4200000.00 reads per min processed...  
 4153846.15 reads per min processed...  
 4188679.25 reads per min processed...  
 4145454.55 reads per min processed...  
 4178571.43 reads per min processed...  
 4137931.03 reads per min processed...  
 4169491.53 reads per min processed...  
 4131147.54 reads per min processed...  
 4161290.32 reads per min processed...  
 4125000.00 reads per min processed...  
 4153846.15 reads per min processed...  
 4119402.99 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.giCvmxLxyL/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -131367.759531
EM: Round [1] log likelihood: -131293.181475
EM: Round [2] log likelihood: -131264.612312
EM: Round [3] log likelihood: -131251.044941
EM: Round [4] log likelihood: -131243.884405
EM: Round [5] log likelihood: -131239.855342
EM: Round [6] log likelihood: -131237.473981
EM: Round [7] log likelihood: -131235.999941
EM: Round [8] log likelihood: -131235.044632
EM: Round [9] log likelihood: -131234.397289
EM: Round [10] log likelihood: -131233.940154
EM: Round [11] log likelihood: -131233.605342
EM: Round [12] log likelihood: -131233.352357
EM: Round [13] log likelihood: -131233.156158
EM: Round [14] log likelihood: -131233.000671
EM: Round [15] log likelihood: -131232.875205
EM: Round [16] log likelihood: -131232.772406
EM: Round [17] log likelihood: -131232.687060
EM: Round [18] log likelihood: -131232.615378
EM: Round [19] log likelihood: -131232.554542
EM: Round [20] log likelihood: -131232.502420
EM: Round [21] log likelihood: -131232.457372
EM: Round [22] log likelihood: -131232.418124
EM: Round [23] log likelihood: -131232.383672
EM: Round [24] log likelihood: -131232.353218
EM: Round [25] log likelihood: -131232.326124
EM: Round [26] log likelihood: -131232.301874
EM: Round [27] log likelihood: -131232.280049
EM: Round [28] log likelihood: -131232.260308
EM: Round [29] log likelihood: -131232.242367
EM: Round [30] log likelihood: -131232.225994
EM: Round [31] log likelihood: -131232.210993
EM: Round [32] log likelihood: -131232.197202
EM: Round [33] log likelihood: -131232.184482
EM: Round [34] log likelihood: -131232.172718
EM: Round [35] log likelihood: -131232.161809
EM: Round [36] log likelihood: -131232.151670
EM: Round [37] log likelihood: -131232.142228
EM: Round [38] log likelihood: -131232.133419
EM: Round [39] log likelihood: -131232.125186
EM: Round [40] log likelihood: -131232.117480
EM: Round [41] log likelihood: -131232.110259
EM: Round [42] log likelihood: -131232.103484
EM: Round [43] log likelihood: -131232.097121
EM: Round [44] log likelihood: -131232.091139
EM: Round [45] log likelihood: -131232.085511
EM: Round [46] log likelihood: -131232.080211
EM: Round [47] log likelihood: -131232.075218
EM: Round [48] log likelihood: -131232.070510
EM: Round [49] log likelihood: -131232.066070
EM: Round [50] log likelihood: -131232.061879
EM: Round [51] log likelihood: -131232.057923
EM: Round [52] log likelihood: -131232.054186
EM: Round [53] log likelihood: -131232.050655
EM: Round [54] log likelihood: -131232.047318
EM: Round [55] log likelihood: -131232.044163
EM: Round [56] log likelihood: -131232.041179
EM: Round [57] log likelihood: -131232.038357
EM: Round [58] log likelihood: -131232.035687
EM: Round [59] log likelihood: -131232.033160
EM: Round [60] log likelihood: -131232.030769
EM: Round [61] log likelihood: -131232.028505
EM: Round [62] log likelihood: -131232.026362
EM: Round [63] log likelihood: -131232.024333
EM: Round [64] log likelihood: -131232.022411
EM: Round [65] log likelihood: -131232.020591
EM: Round [66] log likelihood: -131232.018867
EM: Round [67] log likelihood: -131232.017234
EM: Round [68] log likelihood: -131232.015687
EM: Round [69] log likelihood: -131232.014221
EM: Round [70] log likelihood: -131232.012832
EM: Round [71] log likelihood: -131232.011516
EM: Round [72] log likelihood: -131232.010268
EM: Round [73] log likelihood: -131232.009086
EM: Round [74] log likelihood: -131232.007965
EM: Round [75] log likelihood: -131232.006903
EM: Round [76] log likelihood: -131232.005897
EM: Round [77] log likelihood: -131232.004942
EM: Round [78] log likelihood: -131232.004038
EM: Round [79] log likelihood: -131232.003180
EM: Round [80] log likelihood: -131232.002367
EM: Round [81] log likelihood: -131232.001596
EM: Round [82] log likelihood: -131232.000865
EM: Round [83] log likelihood: -131232.000172
EM: Round [84] log likelihood: -131231.999515
EM: Round [85] log likelihood: -131231.998892
EM: Round [86] log likelihood: -131231.998301
EM: Round [87] log likelihood: -131231.997741
EM: Round [88] log likelihood: -131231.997210
EM: Round [89] log likelihood: -131231.996706
EM: Round [90] log likelihood: -131231.996228
EM: Round [91] log likelihood: -131231.995775
EM: Round [92] log likelihood: -131231.995345
EM: Round [93] log likelihood: -131231.994938
EM: Round [94] log likelihood: -131231.994551
EM: Round [95] log likelihood: -131231.994185
EM: Round [96] log likelihood: -131231.993837
EM: Round [97] log likelihood: -131231.993507
EM: Round [98] log likelihood: -131231.993195
EM: Round [99] log likelihood: -131231.992898
EM: Round [100] log likelihood: -131231.992617
EM: Round [101] log likelihood: -131231.992350
EM: Round [102] log likelihood: -131231.992097
EM: Round [103] log likelihood: -131231.991857
EM: Round [104] log likelihood: -131231.991629
EM: Round [105] log likelihood: -131231.991413
EM: Round [106] log likelihood: -131231.991208
EM: Round [107] log likelihood: -131231.991014
EM: Round [108] log likelihood: -131231.990829
EM: Round [109] log likelihood: -131231.990655
EM: Round [110] log likelihood: -131231.990489
EM: Round [111] log likelihood: -131231.990331
EM: Round [112] log likelihood: -131231.990182
EM: Round [113] log likelihood: -131231.990041
EM: Round [114] log likelihood: -131231.989906
EM: Round [115] log likelihood: -131231.989779
EM: Round [116] log likelihood: -131231.989658
EM: Round [117] log likelihood: -131231.989543
EM: Round [118] log likelihood: -131231.989435
EM: Round [119] log likelihood: -131231.989331
EM: Round [120] log likelihood: -131231.989234
EM: Stopping iterations at round 120 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -131318.009572
EM: Round [1] log likelihood: -131251.582061
EM: Round [2] log likelihood: -131227.193871
EM: Round [3] log likelihood: -131216.052445
EM: Round [4] log likelihood: -131210.324937
EM: Round [5] log likelihood: -131207.136135
EM: Round [6] log likelihood: -131205.246278
EM: Round [7] log likelihood: -131204.062066
EM: Round [8] log likelihood: -131203.280693
EM: Round [9] log likelihood: -131202.740427
EM: Round [10] log likelihood: -131202.351329
EM: Round [11] log likelihood: -131202.061323
EM: Round [12] log likelihood: -131201.838976
EM: Round [13] log likelihood: -131201.664512
EM: Round [14] log likelihood: -131201.524983
EM: Round [15] log likelihood: -131201.411591
EM: Round [16] log likelihood: -131201.318163
EM: Round [17] log likelihood: -131201.240249
EM: Round [18] log likelihood: -131201.174563
EM: Round [19] log likelihood: -131201.118635
EM: Round [20] log likelihood: -131201.070578
EM: Round [21] log likelihood: -131201.028931
EM: Round [22] log likelihood: -131200.992553
EM: Round [23] log likelihood: -131200.960541
EM: Round [24] log likelihood: -131200.932177
EM: Round [25] log likelihood: -131200.906884
EM: Round [26] log likelihood: -131200.884196
EM: Round [27] log likelihood: -131200.863735
EM: Round [28] log likelihood: -131200.845189
EM: Round [29] log likelihood: -131200.828304
EM: Round [30] log likelihood: -131200.812866
EM: Round [31] log likelihood: -131200.798699
EM: Round [32] log likelihood: -131200.785655
EM: Round [33] log likelihood: -131200.773608
EM: Round [34] log likelihood: -131200.762452
EM: Round [35] log likelihood: -131200.752096
EM: Round [36] log likelihood: -131200.742461
EM: Round [37] log likelihood: -131200.733480
EM: Round [38] log likelihood: -131200.725094
EM: Round [39] log likelihood: -131200.717251
EM: Round [40] log likelihood: -131200.709906
EM: Round [41] log likelihood: -131200.703019
EM: Round [42] log likelihood: -131200.696555
EM: Round [43] log likelihood: -131200.690481
EM: Round [44] log likelihood: -131200.684769
EM: Round [45] log likelihood: -131200.679394
EM: Round [46] log likelihood: -131200.674331
EM: Round [47] log likelihood: -131200.669560
EM: Round [48] log likelihood: -131200.665061
EM: Round [49] log likelihood: -131200.660818
EM: Round [50] log likelihood: -131200.656812
EM: Round [51] log likelihood: -131200.653030
EM: Round [52] log likelihood: -131200.649458
EM: Round [53] log likelihood: -131200.646083
EM: Round [54] log likelihood: -131200.642893
EM: Round [55] log likelihood: -131200.639877
EM: Round [56] log likelihood: -131200.637025
EM: Round [57] log likelihood: -131200.634327
EM: Round [58] log likelihood: -131200.631775
EM: Round [59] log likelihood: -131200.629360
EM: Round [60] log likelihood: -131200.627075
EM: Round [61] log likelihood: -131200.624912
EM: Round [62] log likelihood: -131200.622864
EM: Round [63] log likelihood: -131200.620926
EM: Round [64] log likelihood: -131200.619090
EM: Round [65] log likelihood: -131200.617351
EM: Round [66] log likelihood: -131200.615705
EM: Round [67] log likelihood: -131200.614145
EM: Round [68] log likelihood: -131200.612667
EM: Round [69] log likelihood: -131200.611268
EM: Round [70] log likelihood: -131200.609941
EM: Round [71] log likelihood: -131200.608685
EM: Round [72] log likelihood: -131200.607494
EM: Round [73] log likelihood: -131200.606366
EM: Round [74] log likelihood: -131200.605296
EM: Round [75] log likelihood: -131200.604283
EM: Round [76] log likelihood: -131200.603322
EM: Round [77] log likelihood: -131200.602412
EM: Round [78] log likelihood: -131200.601549
EM: Round [79] log likelihood: -131200.600731
EM: Round [80] log likelihood: -131200.599956
EM: Round [81] log likelihood: -131200.599220
EM: Round [82] log likelihood: -131200.598523
EM: Round [83] log likelihood: -131200.597863
EM: Round [84] log likelihood: -131200.597236
EM: Round [85] log likelihood: -131200.596642
EM: Round [86] log likelihood: -131200.596079
EM: Round [87] log likelihood: -131200.595545
EM: Round [88] log likelihood: -131200.595039
EM: Round [89] log likelihood: -131200.594559
EM: Round [90] log likelihood: -131200.594104
EM: Round [91] log likelihood: -131200.593672
EM: Round [92] log likelihood: -131200.593263
EM: Round [93] log likelihood: -131200.592875
EM: Round [94] log likelihood: -131200.592506
EM: Round [95] log likelihood: -131200.592157
EM: Round [96] log likelihood: -131200.591826
EM: Round [97] log likelihood: -131200.591512
EM: Round [98] log likelihood: -131200.591215
EM: Round [99] log likelihood: -131200.590932
EM: Round [100] log likelihood: -131200.590664
EM: Round [101] log likelihood: -131200.590410
EM: Round [102] log likelihood: -131200.590170
EM: Round [103] log likelihood: -131200.589941
EM: Round [104] log likelihood: -131200.589724
EM: Round [105] log likelihood: -131200.589519
EM: Round [106] log likelihood: -131200.589324
EM: Round [107] log likelihood: -131200.589139
EM: Round [108] log likelihood: -131200.588964
EM: Round [109] log likelihood: -131200.588797
EM: Round [110] log likelihood: -131200.588640
EM: Round [111] log likelihood: -131200.588490
EM: Round [112] log likelihood: -131200.588348
EM: Round [113] log likelihood: -131200.588214
EM: Round [114] log likelihood: -131200.588086
EM: Round [115] log likelihood: -131200.587965
EM: Round [116] log likelihood: -131200.587850
EM: Round [117] log likelihood: -131200.587741
EM: Round [118] log likelihood: -131200.587637
EM: Round [119] log likelihood: -131200.587539
EM: Stopping iterations at round 119 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 130047355 > /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir > /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir --annotate /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir
-done, see /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 1137, filtered: 8178)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.giCvmxLxyL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.giCvmxLxyL/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000277283.1]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000227632.2]
WARNING, no entry stored in dbm for [ENSG00000226029.1]
WARNING, no entry stored in dbm for [ENSG00000224905.7]
WARNING, no entry stored in dbm for [ENSG00000215559.8]
WARNING, no entry stored in dbm for [ENSG00000220685.3]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000244723.3]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000272655.2]
WARNING, no entry stored in dbm for [ENSG00000275716.1]
WARNING, no entry stored in dbm for [ENSG00000275212.3]
WARNING, no entry stored in dbm for [ENSG00000235703.6]
WARNING, no entry stored in dbm for [ENSG00000270055.1]
WARNING, no entry stored in dbm for [ENSG00000251441.3]
WARNING, no entry stored in dbm for [ENSG00000231890.8]
WARNING, no entry stored in dbm for [ENSG00000231235.1]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000271699.5]
WARNING, no entry stored in dbm for [ENSG00000261060.1]
WARNING, no entry stored in dbm for [ENSG00000259020.3]
WARNING, no entry stored in dbm for [ENSG00000258526.7]
WARNING, no entry stored in dbm for [ENSG00000255644.1]
WARNING, no entry stored in dbm for [ENSG00000262202.4]
WARNING, no entry stored in dbm for [ENSG00000233836.7]
WARNING, no entry stored in dbm for [ENSG00000225594.1]
WARNING, no entry stored in dbm for [ENSG00000183666.17]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000230202.1]
WARNING, no entry stored in dbm for [ENSG00000282458.1]
WARNING, no entry stored in dbm for [ENSG00000234769.7]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000246877.1]
WARNING, no entry stored in dbm for [ENSG00000260693.1]
WARNING, no entry stored in dbm for [ENSG00000285677.2]
WARNING, no entry stored in dbm for [ENSG00000002079.14]
WARNING, no entry stored in dbm for [ENSG00000197320.5]
WARNING, no entry stored in dbm for [ENSG00000270641.1]
WARNING, no entry stored in dbm for [ENSG00000225649.6]
WARNING, no entry stored in dbm for [ENSG00000276449.1]
WARNING, no entry stored in dbm for [ENSG00000214093.3]
WARNING, no entry stored in dbm for [ENSG00000266733.7]
WARNING, no entry stored in dbm for [ENSG00000286269.1]
WARNING, no entry stored in dbm for [ENSG00000232354.8]
WARNING, no entry stored in dbm for [ENSG00000128438.10]
WARNING, no entry stored in dbm for [ENSG00000272381.2]
WARNING, no entry stored in dbm for [ENSG00000267026.5]
WARNING, no entry stored in dbm for [ENSG00000224479.6]
WARNING, no entry stored in dbm for [ENSG00000228938.3]
WARNING, no entry stored in dbm for [ENSG00000213332.4]
WARNING, no entry stored in dbm for [ENSG00000197847.12]
WARNING, no entry stored in dbm for [ENSG00000288670.1]
WARNING, no entry stored in dbm for [ENSG00000286818.1]
WARNING, no entry stored in dbm for [ENSG00000215580.11]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000281641.3]
WARNING, no entry stored in dbm for [ENSG00000258130.8]
WARNING, no entry stored in dbm for [ENSG00000226525.5]
WARNING, no entry stored in dbm for [ENSG00000228861.5]
WARNING, no entry stored in dbm for [ENSG00000225482.1]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000233072.1]
WARNING, no entry stored in dbm for [ENSG00000214535.3]
WARNING, no entry stored in dbm for [ENSG00000223739.1]
WARNING, no entry stored in dbm for [ENSG00000231579.3]
WARNING, no entry stored in dbm for [ENSG00000254635.6]
WARNING, no entry stored in dbm for [ENSG00000184139.8]
WARNING, no entry stored in dbm for [ENSG00000215869.4]
WARNING, no entry stored in dbm for [ENSG00000226314.8]
WARNING, no entry stored in dbm for [ENSG00000243730.2]
WARNING, no entry stored in dbm for [ENSG00000243744.2]
WARNING, no entry stored in dbm for [ENSG00000215444.2]
WARNING, no entry stored in dbm for [ENSG00000243855.1]
WARNING, no entry stored in dbm for [ENSG00000223538.2]
WARNING, no entry stored in dbm for [ENSG00000230149.2]
WARNING, no entry stored in dbm for [ENSG00000276047.1]
WARNING, no entry stored in dbm for [ENSG00000240869.3]
WARNING, no entry stored in dbm for [ENSG00000264582.2]
WARNING, no entry stored in dbm for [ENSG00000239899.3]
WARNING, no entry stored in dbm for [ENSG00000243738.3]
WARNING, no entry stored in dbm for [ENSG00000239899.3]
WARNING, no entry stored in dbm for [ENSG00000243738.3]
WARNING, no entry stored in dbm for [ENSG00000244642.3]
WARNING, no entry stored in dbm for [ENSG00000240869.3]
WARNING, no entry stored in dbm for [ENSG00000240474.3]
WARNING, no entry stored in dbm for [ENSG00000235848.4]
WARNING, no entry stored in dbm for [ENSG00000223612.3]
WARNING, no entry stored in dbm for [ENSG00000229821.1]
WARNING, no entry stored in dbm for [ENSG00000278834.1]
WARNING, no entry stored in dbm for [ENSG00000236535.1]
WARNING, no entry stored in dbm for [ENSG00000258012.1]
WARNING, no entry stored in dbm for [ENSG00000230928.1]
WARNING, no entry stored in dbm for [ENSG00000229849.1]
WARNING, no entry stored in dbm for [ENSG00000269907.1]
WARNING, no entry stored in dbm for [ENSG00000229980.5]
WARNING, no entry stored in dbm for [ENSG00000225622.1]
WARNING, no entry stored in dbm for [ENSG00000237468.2]
WARNING, no entry stored in dbm for [ENSG00000214176.9]
WARNING, no entry stored in dbm for [ENSG00000227827.3]
WARNING, no entry stored in dbm for [ENSG00000288097.1]
WARNING, no entry stored in dbm for [ENSG00000259940.2]
WARNING, no entry stored in dbm for [ENSG00000231278.1]
WARNING, no entry stored in dbm for [ENSG00000273125.2]
WARNING, no entry stored in dbm for [ENSG00000247774.7]
WARNING, no entry stored in dbm for [ENSG00000215819.3]
WARNING, no entry stored in dbm for [ENSG00000288063.1]
WARNING, no entry stored in dbm for [ENSG00000259231.2]
WARNING, no entry stored in dbm for [ENSG00000106133.18]
WARNING, no entry stored in dbm for [ENSG00000260075.1]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000237187.9]
WARNING, no entry stored in dbm for [ENSG00000224443.1]
WARNING, no entry stored in dbm for [ENSG00000258972.1]
WARNING, no entry stored in dbm for [ENSG00000260423.2]
WARNING, no entry stored in dbm for [ENSG00000198496.12]
WARNING, no entry stored in dbm for [ENSG00000240677.1]
WARNING, no entry stored in dbm for [ENSG00000237729.2]
WARNING, no entry stored in dbm for [ENSG00000236051.7]
WARNING, no entry stored in dbm for [ENSG00000253868.4]
WARNING, no entry stored in dbm for [ENSG00000196810.5]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000214347.8]
WARNING, no entry stored in dbm for [ENSG00000093100.13]
WARNING, no entry stored in dbm for [ENSG00000235989.4]
WARNING, no entry stored in dbm for [ENSG00000100181.22]
WARNING, no entry stored in dbm for [ENSG00000253686.2]
WARNING, no entry stored in dbm for [ENSG00000262454.4]
WARNING, no entry stored in dbm for [ENSG00000272600.1]
WARNING, no entry stored in dbm for [ENSG00000231949.1]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000287553.1]
WARNING, no entry stored in dbm for [ENSG00000266504.1]
WARNING, no entry stored in dbm for [ENSG00000254815.6]
WARNING, no entry stored in dbm for [ENSG00000272381.2]
WARNING, no entry stored in dbm for [ENSG00000241288.8]
WARNING, no entry stored in dbm for [ENSG00000248238.2]
WARNING, no entry stored in dbm for [ENSG00000260192.3]
WARNING, no entry stored in dbm for [ENSG00000260192.3]
WARNING, no entry stored in dbm for [ENSG00000213293.4]
WARNING, no entry stored in dbm for [ENSG00000227744.4]
WARNING, no entry stored in dbm for [ENSG00000267530.3]
WARNING, no entry stored in dbm for [ENSG00000198685.4]
WARNING, no entry stored in dbm for [ENSG00000229891.2]
WARNING, no entry stored in dbm for [ENSG00000234199.3]
WARNING, no entry stored in dbm for [ENSG00000224259.7]
WARNING, no entry stored in dbm for [ENSG00000235366.2]
WARNING, no entry stored in dbm for [ENSG00000225269.3]
WARNING, no entry stored in dbm for [ENSG00000258441.1]
WARNING, no entry stored in dbm for [ENSG00000258735.1]
WARNING, no entry stored in dbm for [ENSG00000236790.6]
WARNING, no entry stored in dbm for [ENSG00000214223.4]
WARNING, no entry stored in dbm for [ENSG00000235422.1]
WARNING, no entry stored in dbm for [ENSG00000287678.1]
WARNING, no entry stored in dbm for [ENSG00000269821.1]
WARNING, no entry stored in dbm for [ENSG00000254034.2]
WARNING, no entry stored in dbm for [ENSG00000224289.1]
WARNING, no entry stored in dbm for [ENSG00000260251.1]
WARNING, no entry stored in dbm for [ENSG00000220575.8]
WARNING, no entry stored in dbm for [ENSG00000252316.1]
WARNING, no entry stored in dbm for [ENSG00000220937.3]
WARNING, no entry stored in dbm for [ENSG00000228398.3]
WARNING, no entry stored in dbm for [ENSG00000231376.1]
WARNING, no entry stored in dbm for [ENSG00000124097.7]
WARNING, no entry stored in dbm for [ENSG00000230519.2]
WARNING, no entry stored in dbm for [ENSG00000180229.12]
WARNING, no entry stored in dbm for [ENSG00000274471.2]
WARNING, no entry stored in dbm for [ENSG00000200156.1]
WARNING, no entry stored in dbm for [ENSG00000199568.1]
WARNING, no entry stored in dbm for [ENSG00000232825.3]
WARNING, no entry stored in dbm for [ENSG00000253816.3]
WARNING, no entry stored in dbm for [ENSG00000224458.3]
WARNING, no entry stored in dbm for [ENSG00000226777.7]
WARNING, no entry stored in dbm for [ENSG00000168852.13]
WARNING, no entry stored in dbm for [ENSG00000260693.1]
WARNING, no entry stored in dbm for [ENSG00000235583.2]
WARNING, no entry stored in dbm for [ENSG00000229151.2]
WARNING, no entry stored in dbm for [ENSG00000214184.3]
WARNING, no entry stored in dbm for [ENSG00000230183.4]
WARNING, no entry stored in dbm for [ENSG00000228347.1]
WARNING, no entry stored in dbm for [ENSG00000282826.2]
WARNING, no entry stored in dbm for [ENSG00000233485.1]
WARNING, no entry stored in dbm for [ENSG00000223652.2]
WARNING, no entry stored in dbm for [ENSG00000232310.8]
WARNING, no entry stored in dbm for [ENSG00000248441.7]
WARNING, no entry stored in dbm for [ENSG00000255052.5]
WARNING, no entry stored in dbm for [ENSG00000254016.3]
WARNING, no entry stored in dbm for [ENSG00000255052.5]
WARNING, no entry stored in dbm for [ENSG00000254016.3]
WARNING, no entry stored in dbm for [ENSG00000260464.1]
WARNING, no entry stored in dbm for [ENSG00000232300.1]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000214031.2]
WARNING, no entry stored in dbm for [ENSG00000285035.1]
WARNING, no entry stored in dbm for [ENSG00000260599.1]
WARNING, no entry stored in dbm for [ENSG00000214765.8]
WARNING, no entry stored in dbm for [ENSG00000273550.2]
WARNING, no entry stored in dbm for [ENSG00000241231.2]
WARNING, no entry stored in dbm for [ENSG00000215908.10]
WARNING, no entry stored in dbm for [ENSG00000285219.2]
WARNING, no entry stored in dbm for [ENSG00000237141.1]
WARNING, no entry stored in dbm for [ENSG00000278332.1]
WARNING, no entry stored in dbm for [ENSG00000177337.8]
WARNING, no entry stored in dbm for [ENSG00000251031.2]
WARNING, no entry stored in dbm for [ENSG00000241720.2]
WARNING, no entry stored in dbm for [ENSG00000262052.1]
WARNING, no entry stored in dbm for [ENSG00000273032.3]
WARNING, no entry stored in dbm for [ENSG00000279641.1]
WARNING, no entry stored in dbm for [ENSG00000232303.2]
WARNING, no entry stored in dbm for [ENSG00000231099.1]
WARNING, no entry stored in dbm for [ENSG00000211459.2]
WARNING, no entry stored in dbm for [ENSG00000253260.2]
WARNING, no entry stored in dbm for [ENSG00000245468.4]
WARNING, no entry stored in dbm for [ENSG00000271858.5]
WARNING, no entry stored in dbm for [ENSG00000239224.3]
WARNING, no entry stored in dbm for [ENSG00000273125.2]
WARNING, no entry stored in dbm for [ENSG00000234303.3]
WARNING, no entry stored in dbm for [ENSG00000237135.1]
WARNING, no entry stored in dbm for [ENSG00000215386.13]
WARNING, no entry stored in dbm for [ENSG00000213333.3]
WARNING, no entry stored in dbm for [ENSG00000243081.2]
WARNING, no entry stored in dbm for [ENSG00000239899.3]
WARNING, no entry stored in dbm for [ENSG00000233033.1]
WARNING, no entry stored in dbm for [ENSG00000204352.4]
WARNING, no entry stored in dbm for [ENSG00000248801.7]
WARNING, no entry stored in dbm for [ENSG00000240868.1]
WARNING, no entry stored in dbm for [ENSG00000260071.2]
WARNING, no entry stored in dbm for [ENSG00000267432.6]
WARNING, no entry stored in dbm for [ENSG00000270025.2]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000257453.1]
WARNING, no entry stored in dbm for [ENSG00000232019.1]
WARNING, no entry stored in dbm for [ENSG00000229358.3]
WARNING, no entry stored in dbm for [ENSG00000245729.2]
WARNING, no entry stored in dbm for [ENSG00000285747.1]
WARNING, no entry stored in dbm for [ENSG00000257252.6]
WARNING, no entry stored in dbm for [ENSG00000273387.1]
WARNING, no entry stored in dbm for [ENSG00000255108.1]
WARNING, no entry stored in dbm for [ENSG00000224905.7]
WARNING, no entry stored in dbm for [ENSG00000215559.8]
WARNING, no entry stored in dbm for [ENSG00000224905.7]
WARNING, no entry stored in dbm for [ENSG00000215559.8]
WARNING, no entry stored in dbm for [ENSG00000256035.1]
WARNING, no entry stored in dbm for [ENSG00000230551.4]
WARNING, no entry stored in dbm for [ENSG00000246889.2]
WARNING, no entry stored in dbm for [ENSG00000257453.1]
WARNING, no entry stored in dbm for [ENSG00000232855.7]
WARNING, no entry stored in dbm for [ENSG00000229992.1]
WARNING, no entry stored in dbm for [ENSG00000220848.5]
WARNING, no entry stored in dbm for [ENSG00000261435.1]
WARNING, no entry stored in dbm for [ENSG00000225096.3]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000285871.1]
WARNING, no entry stored in dbm for [ENSG00000260475.1]
WARNING, no entry stored in dbm for [ENSG00000237761.3]
WARNING, no entry stored in dbm for [ENSG00000272078.1]
WARNING, no entry stored in dbm for [ENSG00000215908.10]
WARNING, no entry stored in dbm for [ENSG00000272449.2]
WARNING, no entry stored in dbm for [ENSG00000227240.2]
WARNING, no entry stored in dbm for [ENSG00000258935.1]
WARNING, no entry stored in dbm for [ENSG00000233558.1]
WARNING, no entry stored in dbm for [ENSG00000220105.2]
WARNING, no entry stored in dbm for [ENSG00000284830.1]
WARNING, no entry stored in dbm for [ENSG00000288543.1]
WARNING, no entry stored in dbm for [ENSG00000285564.2]
WARNING, no entry stored in dbm for [ENSG00000265018.6]
WARNING, no entry stored in dbm for [ENSG00000240152.2]
WARNING, no entry stored in dbm for [ENSG00000261143.1]
WARNING, no entry stored in dbm for [ENSG00000285219.2]
WARNING, no entry stored in dbm for [ENSG00000261499.2]
WARNING, no entry stored in dbm for [ENSG00000273598.1]
WARNING, no entry stored in dbm for [ENSG00000286830.1]
WARNING, no entry stored in dbm for [ENSG00000256542.2]
WARNING, no entry stored in dbm for [ENSG00000261273.1]
WARNING, no entry stored in dbm for [ENSG00000260413.1]
WARNING, no entry stored in dbm for [ENSG00000253334.1]
WARNING, no entry stored in dbm for [ENSG00000253334.1]
WARNING, no entry stored in dbm for [ENSG00000253334.1]
WARNING, no entry stored in dbm for [ENSG00000214135.8]
WARNING, no entry stored in dbm for [ENSG00000283213.1]
WARNING, no entry stored in dbm for [ENSG00000283345.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000272347.1]
WARNING, no entry stored in dbm for [ENSG00000215692.2]
WARNING, no entry stored in dbm for [ENSG00000285336.1]
WARNING, no entry stored in dbm for [ENSG00000277332.1]
WARNING, no entry stored in dbm for [ENSG00000255519.1]
WARNING, no entry stored in dbm for [ENSG00000282375.1]
WARNING, no entry stored in dbm for [ENSG00000265401.1]
WARNING, no entry stored in dbm for [ENSG00000173209.23]
WARNING, no entry stored in dbm for [ENSG00000240238.1]
WARNING, no entry stored in dbm for [ENSG00000241251.2]
WARNING, no entry stored in dbm for [ENSG00000205976.4]
WARNING, no entry stored in dbm for [ENSG00000284698.1]
WARNING, no entry stored in dbm for [ENSG00000261501.1]
WARNING, no entry stored in dbm for [ENSG00000258048.1]
WARNING, no entry stored in dbm for [ENSG00000257337.7]
WARNING, no entry stored in dbm for [ENSG00000287686.1]
WARNING, no entry stored in dbm for [ENSG00000229334.1]
WARNING, no entry stored in dbm for [ENSG00000225172.6]
WARNING, no entry stored in dbm for [ENSG00000232115.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000242338.6]
WARNING, no entry stored in dbm for [ENSG00000279791.1]
WARNING, no entry stored in dbm for [ENSG00000231409.3]
WARNING, no entry stored in dbm for [ENSG00000226107.1]
WARNING, no entry stored in dbm for [ENSG00000281896.1]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000267605.7]
WARNING, no entry stored in dbm for [ENSG00000264112.1]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000259341.2]
WARNING, no entry stored in dbm for [ENSG00000186148.13]
WARNING, no entry stored in dbm for [ENSG00000285587.1]
WARNING, no entry stored in dbm for [ENSG00000268543.1]
WARNING, no entry stored in dbm for [ENSG00000261777.6]
WARNING, no entry stored in dbm for [ENSG00000274184.1]
WARNING, no entry stored in dbm for [ENSG00000286201.1]
WARNING, no entry stored in dbm for [ENSG00000267723.1]
WARNING, no entry stored in dbm for [ENSG00000286177.1]
WARNING, no entry stored in dbm for [ENSG00000272702.1]
WARNING, no entry stored in dbm for [ENSG00000286797.1]
WARNING, no entry stored in dbm for [ENSG00000238045.9]
WARNING, no entry stored in dbm for [ENSG00000260198.1]
WARNING, no entry stored in dbm for [ENSG00000240388.2]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000245317.2]
WARNING, no entry stored in dbm for [ENSG00000257022.1]
WARNING, no entry stored in dbm for [ENSG00000161132.6]
WARNING, no entry stored in dbm for [ENSG00000246225.7]
WARNING, no entry stored in dbm for [ENSG00000263159.1]
WARNING, no entry stored in dbm for [ENSG00000261535.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000250778.1]
WARNING, no entry stored in dbm for [ENSG00000239969.5]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000241057.2]


	* STAR-Fusion complete.  See output: /tmp/nxf.giCvmxLxyL/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)