.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR (aih-tih-sc-2905df-R1_A23WJ53LT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/77420491ae19c1305a65617586a047/.command.log
Size: 390.7 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR (aih-tih-sc-2905df-R1_A23WJ53LT4_1)
Attempt
Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/28dd0e18edfed46f9e0befaf548240/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusionreport.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/82083ce8b09b9d667394069307b539/aih-tih-sc-2905df-R1_A23WJ53LT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/77420491ae19c1305a65617586a047/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/77420491ae19c1305a65617586a047/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/82083ce8b09b9d667394069307b539/aih-tih-sc-2905df-R1_A23WJ53LT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusionreport.tsv --gtf /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1 --shrink_introns --max_intron_length 1000 
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	8328067	8328179	.	+	.	gene_id "Y_RNA^ENSG00000252254.1"; transcript_id "ENST00000516445.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.681-201"; exon_number 1; exon_id "ENSE00002088722.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252254.1"; orig_coord_info "chr1,8328067,8328179,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	23370254	23370346	.	+	.	gene_id "Y_RNA^ENSG00000201405.1"; transcript_id "ENST00000364535.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.249-201"; exon_number 1; exon_id "ENSE00001807756.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201405.1"; orig_coord_info "chr1,23370254,23370346,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	25877496	25877605	.	+	.	gene_id "Y_RNA^ENSG00000207302.1"; transcript_id "ENST00000384572.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.526-201"; exon_number 1; exon_id "ENSE00001499580.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207302.1"; orig_coord_info "chr1,25877496,25877605,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	28985710	28985810	.	+	.	gene_id "Y_RNA^ENSG00000206704.1"; transcript_id "ENST00000383977.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.403-201"; exon_number 1; exon_id "ENSE00001808314.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206704.1"; orig_coord_info "chr1,28985710,28985810,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	32639951	32640052	.	+	.	gene_id "Y_RNA^ENSG00000200591.1"; transcript_id "ENST00000363721.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.165-201"; exon_number 1; exon_id "ENSE00001808667.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200591.1"; orig_coord_info "chr1,32639951,32640052,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	35195969	35196062	.	+	.	gene_id "Y_RNA^ENSG00000201868.1"; transcript_id "ENST00000364998.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.303-201"; exon_number 1; exon_id "ENSE00001439761.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201868.1"; orig_coord_info "chr1,35195969,35196062,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	51107222	51107331	.	+	.	gene_id "Y_RNA^ENSG00000200262.1"; transcript_id "ENST00000363392.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.129-201"; exon_number 1; exon_id "ENSE00001438155.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200262.1"; orig_coord_info "chr1,51107222,51107331,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	62211557	62211666	.	+	.	gene_id "Y_RNA^ENSG00000200174.1"; transcript_id "ENST00000363304.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.120-201"; exon_number 1; exon_id "ENSE00001438067.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200174.1"; orig_coord_info "chr1,62211557,62211666,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	63338263	63338372	.	+	.	gene_id "Y_RNA^ENSG00000252784.1"; transcript_id "ENST00000516975.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.710-201"; exon_number 1; exon_id "ENSE00002089252.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252784.1"; orig_coord_info "chr1,63338263,63338372,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	85264296	85264402	.	+	.	gene_id "Y_RNA^ENSG00000223254.1"; transcript_id "ENST00000411322.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.627-201"; exon_number 1; exon_id "ENSE00001591140.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223254.1"; orig_coord_info "chr1,85264296,85264402,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	91261625	91261724	.	+	.	gene_id "Y_RNA^ENSG00000206817.1"; transcript_id "ENST00000384090.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.434-201"; exon_number 1; exon_id "ENSE00001499100.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206817.1"; orig_coord_info "chr1,91261625,91261724,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	93385711	93385817	.	+	.	gene_id "Y_RNA^ENSG00000207379.1"; transcript_id "ENST00000384649.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.543-201"; exon_number 1; exon_id "ENSE00001499657.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207379.1"; orig_coord_info "chr1,93385711,93385817,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	99791662	99791753	.	+	.	gene_id "Y_RNA^ENSG00000202254.1"; transcript_id "ENST00000365384.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.345-201"; exon_number 1; exon_id "ENSE00001440147.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202254.1"; orig_coord_info "chr1,99791662,99791753,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	111446798	111446908	.	+	.	gene_id "Y_RNA^ENSG00000199890.1"; transcript_id "ENST00000363020.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.86-201"; exon_number 1; exon_id "ENSE00001437783.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199890.1"; orig_coord_info "chr1,111446798,111446908,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	114490724	114490832	.	+	.	gene_id "Y_RNA^ENSG00000201114.1"; transcript_id "ENST00000364244.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.220-201"; exon_number 1; exon_id "ENSE00001807149.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201114.1"; orig_coord_info "chr1,114490724,114490832,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	116452536	116452627	.	+	.	gene_id "Y_RNA^ENSG00000200547.1"; transcript_id "ENST00000363677.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.160-201"; exon_number 1; exon_id "ENSE00001438440.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200547.1"; orig_coord_info "chr1,116452536,116452627,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	148330271	148330394	.	+	.	gene_id "Y_RNA^ENSG00000252744.1"; transcript_id "ENST00000516935.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.707-201"; exon_number 1; exon_id "ENSE00002089212.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252744.1"; orig_coord_info "chr1,148330271,148330394,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	155120490	155120598	.	+	.	gene_id "Y_RNA^ENSG00000202027.1"; transcript_id "ENST00000365157.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.323-201"; exon_number 1; exon_id "ENSE00001808015.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202027.1"; orig_coord_info "chr1,155120490,155120598,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	161699506	161699607	.	+	.	gene_id "Y_RNA^ENSG00000199595.1"; transcript_id "ENST00000362725.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.51-201"; exon_number 1; exon_id "ENSE00001807435.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199595.1"; orig_coord_info "chr1,161699506,161699607,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	164854231	164854332	.	+	.	gene_id "Y_RNA^ENSG00000201987.1"; transcript_id "ENST00000365117.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.315-201"; exon_number 1; exon_id "ENSE00001439880.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201987.1"; orig_coord_info "chr1,164854231,164854332,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	173808489	173808622	.	+	.	gene_id "Y_RNA^ENSG00000252357.1"; transcript_id "ENST00000516548.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.686-201"; exon_number 1; exon_id "ENSE00002088825.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252357.1"; orig_coord_info "chr1,173808489,173808622,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	184315658	184315765	.	+	.	gene_id "Y_RNA^ENSG00000207080.2"; transcript_id "ENST00000384352.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.477-201"; exon_number 1; exon_id "ENSE00001807758.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207080.2"; orig_coord_info "chr1,184315658,184315765,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	185251313	185251411	.	+	.	gene_id "Y_RNA^ENSG00000201421.1"; transcript_id "ENST00000364551.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.251-201"; exon_number 1; exon_id "ENSE00001439314.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201421.1"; orig_coord_info "chr1,185251313,185251411,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	185266535	185266627	.	+	.	gene_id "Y_RNA^ENSG00000252612.1"; transcript_id "ENST00000516803.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.699-201"; exon_number 1; exon_id "ENSE00002089080.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252612.1"; orig_coord_info "chr1,185266535,185266627,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	202070841	202070943	.	+	.	gene_id "Y_RNA^ENSG00000212512.2"; transcript_id "ENST00000391210.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.587-201"; exon_number 1; exon_id "ENSE00001508994.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212512.2"; orig_coord_info "chr1,202070841,202070943,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	211803017	211803104	.	+	.	gene_id "Y_RNA^ENSG00000212205.1"; transcript_id "ENST00000390903.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.578-201"; exon_number 1; exon_id "ENSE00001508687.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212205.1"; orig_coord_info "chr1,211803017,211803104,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	236060677	236060772	.	+	.	gene_id "Y_RNA^ENSG00000252822.1"; transcript_id "ENST00000517013.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.713-201"; exon_number 1; exon_id "ENSE00002089290.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252822.1"; orig_coord_info "chr1,236060677,236060772,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	240341385	240341477	.	+	.	gene_id "Y_RNA^ENSG00000252317.1"; transcript_id "ENST00000516508.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.683-201"; exon_number 1; exon_id "ENSE00002088785.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252317.1"; orig_coord_info "chr1,240341385,240341477,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	240698320	240698429	.	+	.	gene_id "Y_RNA^ENSG00000199241.1"; transcript_id "ENST00000362371.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.10-201"; exon_number 1; exon_id "ENSE00001807880.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199241.1"; orig_coord_info "chr1,240698320,240698429,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	247294835	247294941	.	+	.	gene_id "Y_RNA^ENSG00000202079.1"; transcript_id "ENST00000365209.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.329-201"; exon_number 1; exon_id "ENSE00001439972.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202079.1"; orig_coord_info "chr1,247294835,247294941,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	247997000	247997096	.	+	.	gene_id "Y_RNA^ENSG00000199442.1"; transcript_id "ENST00000362572.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.30-201"; exon_number 1; exon_id "ENSE00001437335.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199442.1"; orig_coord_info "chr1,247997000,247997096,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	248029120	248029221	.	+	.	gene_id "Y_RNA^ENSG00000200085.1"; transcript_id "ENST00000363215.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.109-201"; exon_number 1; exon_id "ENSE00001808579.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200085.1"; orig_coord_info "chr1,248029120,248029221,+";
Error, strand conflict in gtf info for chr1	ENSEMBL	exon	248045788	248045889	.	+	.	gene_id "Y_RNA^ENSG00000200982.1"; transcript_id "ENST00000364112.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.204-201"; exon_number 1; exon_id "ENSE00001808356.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200982.1"; orig_coord_info "chr1,248045788,248045889,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	9615267	9615373	.	+	.	gene_id "Y_RNA^ENSG00000207086.1"; transcript_id "ENST00000384358.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.478-201"; exon_number 1; exon_id "ENSE00001499367.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207086.1"; orig_coord_info "chr2,9615267,9615373,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	20480844	20480955	.	+	.	gene_id "Y_RNA^ENSG00000200829.1"; transcript_id "ENST00000363959.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.189-201"; exon_number 1; exon_id "ENSE00001438722.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200829.1"; orig_coord_info "chr2,20480844,20480955,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	25008845	25008946	.	-	.	gene_id "Y_RNA^ENSG00000207069.1"; transcript_id "ENST00000384341.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.474-201"; exon_number 1; exon_id "ENSE00001807795.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207069.1"; orig_coord_info "chr2,25008845,25008946,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	25697076	25697188	.	-	.	gene_id "Y_RNA^ENSG00000201160.1"; transcript_id "ENST00000364290.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.223-201"; exon_number 1; exon_id "ENSE00001808536.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201160.1"; orig_coord_info "chr2,25697076,25697188,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	28927243	28927340	.	-	.	gene_id "Y_RNA^ENSG00000222224.1"; transcript_id "ENST00000410292.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.593-201"; exon_number 1; exon_id "ENSE00001590110.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222224.1"; orig_coord_info "chr2,28927243,28927340,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	28972414	28972521	.	-	.	gene_id "Y_RNA^ENSG00000200283.1"; transcript_id "ENST00000363413.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.130-201"; exon_number 1; exon_id "ENSE00001438176.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200283.1"; orig_coord_info "chr2,28972414,28972521,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	32945339	32945451	.	-	.	gene_id "Y_RNA^ENSG00000206951.1"; transcript_id "ENST00000384224.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.454-201"; exon_number 1; exon_id "ENSE00001806830.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206951.1"; orig_coord_info "chr2,32945339,32945451,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	39128826	39128927	.	-	.	gene_id "Y_RNA^ENSG00000202309.1"; transcript_id "ENST00000365439.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.352-201"; exon_number 1; exon_id "ENSE00001807124.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202309.1"; orig_coord_info "chr2,39128826,39128927,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	41857271	41857372	.	-	.	gene_id "Y_RNA^ENSG00000207218.1"; transcript_id "ENST00000384489.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.505-201"; exon_number 1; exon_id "ENSE00001808627.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207218.1"; orig_coord_info "chr2,41857271,41857372,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	43620878	43620984	.	-	.	gene_id "Y_RNA^ENSG00000207411.1"; transcript_id "ENST00000384680.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.557-201"; exon_number 1; exon_id "ENSE00001499688.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207411.1"; orig_coord_info "chr2,43620878,43620984,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	52297995	52298096	.	+	.	gene_id "Y_RNA^ENSG00000202195.1"; transcript_id "ENST00000365325.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.339-201"; exon_number 1; exon_id "ENSE00001808604.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202195.1"; orig_coord_info "chr2,52297995,52298096,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	55286018	55286128	.	+	.	gene_id "Y_RNA^ENSG00000206964.1"; transcript_id "ENST00000384237.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.457-201"; exon_number 1; exon_id "ENSE00001809215.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206964.1"; orig_coord_info "chr2,55286018,55286128,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	61928634	61928704	.	-	.	gene_id "Y_RNA^ENSG00000278523.1"; transcript_id "ENST00000618813.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.818-201"; exon_number 1; exon_id "ENSE00003722551.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000278523.1"; orig_coord_info "chr2,61928634,61928704,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	62726636	62726740	.	-	.	gene_id "Y_RNA^ENSG00000252436.1"; transcript_id "ENST00000516627.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.692-201"; exon_number 1; exon_id "ENSE00002088904.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252436.1"; orig_coord_info "chr2,62726636,62726740,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	64834056	64834157	.	-	.	gene_id "Y_RNA^ENSG00000199964.1"; transcript_id "ENST00000363094.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.97-201"; exon_number 1; exon_id "ENSE00001808556.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199964.1"; orig_coord_info "chr2,64834056,64834157,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	69334600	69334692	.	+	.	gene_id "Y_RNA^ENSG00000252250.1"; transcript_id "ENST00000516441.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.680-201"; exon_number 1; exon_id "ENSE00002088718.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252250.1"; orig_coord_info "chr2,69334600,69334692,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	82307067	82307168	.	-	.	gene_id "Y_RNA^ENSG00000201311.1"; transcript_id "ENST00000364441.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.238-201"; exon_number 1; exon_id "ENSE00001808389.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201311.1"; orig_coord_info "chr2,82307067,82307168,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	85332895	85332996	.	-	.	gene_id "Y_RNA^ENSG00000239143.1"; transcript_id "ENST00000458902.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.652-201"; exon_number 1; exon_id "ENSE00001806975.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000239143.1"; orig_coord_info "chr2,85332895,85332996,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	85367585	85367686	.	+	.	gene_id "Y_RNA^ENSG00000202382.1"; transcript_id "ENST00000365512.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.360-201"; exon_number 1; exon_id "ENSE00001808861.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202382.1"; orig_coord_info "chr2,85367585,85367686,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	85434507	85434619	.	+	.	gene_id "Y_RNA^ENSG00000207207.1"; transcript_id "ENST00000384478.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.502-201"; exon_number 1; exon_id "ENSE00001808310.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207207.1"; orig_coord_info "chr2,85434507,85434619,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	85460144	85460252	.	-	.	gene_id "Y_RNA^ENSG00000199936.1"; transcript_id "ENST00000363066.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.93-201"; exon_number 1; exon_id "ENSE00001437829.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199936.1"; orig_coord_info "chr2,85460144,85460252,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	86159956	86160066	.	-	.	gene_id "Y_RNA^ENSG00000200241.1"; transcript_id "ENST00000363371.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.125-201"; exon_number 1; exon_id "ENSE00001438134.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200241.1"; orig_coord_info "chr2,86159956,86160066,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	112579484	112579584	.	-	.	gene_id "Y_RNA^ENSG00000207383.1"; transcript_id "ENST00000384653.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.546-201"; exon_number 1; exon_id "ENSE00001499661.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207383.1"; orig_coord_info "chr2,112579484,112579584,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	120192245	120192357	.	+	.	gene_id "Y_RNA^ENSG00000202046.1"; transcript_id "ENST00000365176.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.326-201"; exon_number 1; exon_id "ENSE00001807547.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202046.1"; orig_coord_info "chr2,120192245,120192357,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	120651273	120651374	.	+	.	gene_id "Y_RNA^ENSG00000201006.1"; transcript_id "ENST00000364136.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.206-201"; exon_number 1; exon_id "ENSE00001438899.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201006.1"; orig_coord_info "chr2,120651273,120651374,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	121040610	121040710	.	-	.	gene_id "Y_RNA^ENSG00000201584.1"; transcript_id "ENST00000364714.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.274-201"; exon_number 1; exon_id "ENSE00001807229.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201584.1"; orig_coord_info "chr2,121040610,121040710,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	121603073	121603164	.	-	.	gene_id "Y_RNA^ENSG00000222467.1"; transcript_id "ENST00000410535.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.602-201"; exon_number 1; exon_id "ENSE00001590353.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222467.1"; orig_coord_info "chr2,121603073,121603164,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	127829747	127829852	.	-	.	gene_id "Y_RNA^ENSG00000200390.1"; transcript_id "ENST00000363520.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.143-201"; exon_number 1; exon_id "ENSE00001438283.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200390.1"; orig_coord_info "chr2,127829747,127829852,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	128067800	128067901	.	+	.	gene_id "Y_RNA^ENSG00000200432.1"; transcript_id "ENST00000363562.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.150-201"; exon_number 1; exon_id "ENSE00001807129.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200432.1"; orig_coord_info "chr2,128067800,128067901,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	128350829	128350927	.	-	.	gene_id "Y_RNA^ENSG00000252742.1"; transcript_id "ENST00000516933.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.706-201"; exon_number 1; exon_id "ENSE00002089210.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252742.1"; orig_coord_info "chr2,128350829,128350927,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	135810169	135810279	.	-	.	gene_id "Y_RNA^ENSG00000200664.1"; transcript_id "ENST00000363794.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.175-201"; exon_number 1; exon_id "ENSE00001438557.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200664.1"; orig_coord_info "chr2,135810169,135810279,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	137715332	137715440	.	+	.	gene_id "Y_RNA^ENSG00000222394.2"; transcript_id "ENST00000410462.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.596-201"; exon_number 1; exon_id "ENSE00001590280.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222394.2"; orig_coord_info "chr2,137715332,137715440,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	140992543	140992659	.	+	.	gene_id "Y_RNA^ENSG00000201892.1"; transcript_id "ENST00000365022.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.307-201"; exon_number 1; exon_id "ENSE00001439785.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201892.1"; orig_coord_info "chr2,140992543,140992659,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	143897263	143897361	.	+	.	gene_id "Y_RNA^ENSG00000200287.1"; transcript_id "ENST00000363417.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.131-201"; exon_number 1; exon_id "ENSE00001438180.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200287.1"; orig_coord_info "chr2,143897263,143897361,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	147472133	147472243	.	-	.	gene_id "Y_RNA^ENSG00000207161.1"; transcript_id "ENST00000384432.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.494-201"; exon_number 1; exon_id "ENSE00001499440.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207161.1"; orig_coord_info "chr2,147472133,147472243,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	152284350	152284460	.	-	.	gene_id "Y_RNA^ENSG00000199884.1"; transcript_id "ENST00000363014.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.85-201"; exon_number 1; exon_id "ENSE00001437777.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199884.1"; orig_coord_info "chr2,152284350,152284460,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	159536244	159536346	.	-	.	gene_id "Y_RNA^ENSG00000207117.1"; transcript_id "ENST00000384389.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.484-201"; exon_number 1; exon_id "ENSE00001808016.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207117.1"; orig_coord_info "chr2,159536244,159536346,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	166123494	166123597	.	-	.	gene_id "Y_RNA^ENSG00000238813.1"; transcript_id "ENST00000458774.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.643-201"; exon_number 1; exon_id "ENSE00001809128.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238813.1"; orig_coord_info "chr2,166123494,166123597,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	170783167	170783271	.	+	.	gene_id "Y_RNA^ENSG00000222509.1"; transcript_id "ENST00000410577.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.605-201"; exon_number 1; exon_id "ENSE00001590395.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222509.1"; orig_coord_info "chr2,170783167,170783271,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	172558151	172558252	.	-	.	gene_id "Y_RNA^ENSG00000199866.1"; transcript_id "ENST00000362996.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.80-201"; exon_number 1; exon_id "ENSE00001807809.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199866.1"; orig_coord_info "chr2,172558151,172558252,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	174264878	174264981	.	-	.	gene_id "Y_RNA^ENSG00000201088.1"; transcript_id "ENST00000364218.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.218-201"; exon_number 1; exon_id "ENSE00001438981.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201088.1"; orig_coord_info "chr2,174264878,174264981,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	175176493	175176586	.	-	.	gene_id "Y_RNA^ENSG00000200121.2"; transcript_id "ENST00000363251.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.113-201"; exon_number 1; exon_id "ENSE00001438014.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200121.2"; orig_coord_info "chr2,175176493,175176586,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	177194983	177195095	.	+	.	gene_id "Y_RNA^ENSG00000201102.1"; transcript_id "ENST00000364232.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.219-201"; exon_number 1; exon_id "ENSE00001808676.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201102.1"; orig_coord_info "chr2,177194983,177195095,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	182828124	182828221	.	+	.	gene_id "Y_RNA^ENSG00000212404.1"; transcript_id "ENST00000391102.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.585-201"; exon_number 1; exon_id "ENSE00001508886.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212404.1"; orig_coord_info "chr2,182828124,182828221,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	183022859	183022971	.	-	.	gene_id "Y_RNA^ENSG00000202141.1"; transcript_id "ENST00000365271.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.332-201"; exon_number 1; exon_id "ENSE00001440034.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202141.1"; orig_coord_info "chr2,183022859,183022971,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	200863152	200863247	.	-	.	gene_id "Y_RNA^ENSG00000252759.1"; transcript_id "ENST00000516950.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.708-201"; exon_number 1; exon_id "ENSE00002089227.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252759.1"; orig_coord_info "chr2,200863152,200863247,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	201423513	201423604	.	+	.	gene_id "Y_RNA^ENSG00000202008.1"; transcript_id "ENST00000365138.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.319-201"; exon_number 1; exon_id "ENSE00001439901.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202008.1"; orig_coord_info "chr2,201423513,201423604,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	201808681	201808782	.	+	.	gene_id "Y_RNA^ENSG00000202137.1"; transcript_id "ENST00000365267.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.331-201"; exon_number 1; exon_id "ENSE00001807777.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202137.1"; orig_coord_info "chr2,201808681,201808782,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	206025593	206025697	.	+	.	gene_id "Y_RNA^ENSG00000207386.1"; transcript_id "ENST00000384656.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.548-201"; exon_number 1; exon_id "ENSE00001499664.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207386.1"; orig_coord_info "chr2,206025593,206025697,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	206701065	206701185	.	-	.	gene_id "Y_RNA^ENSG00000207319.1"; transcript_id "ENST00000384589.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.531-201"; exon_number 1; exon_id "ENSE00001499597.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207319.1"; orig_coord_info "chr2,206701065,206701185,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	207687960	207688059	.	+	.	gene_id "Y_RNA^ENSG00000200764.1"; transcript_id "ENST00000363894.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.185-201"; exon_number 1; exon_id "ENSE00001438657.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200764.1"; orig_coord_info "chr2,207687960,207688059,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	210265963	210266074	.	+	.	gene_id "Y_RNA^ENSG00000199203.1"; transcript_id "ENST00000362333.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.4-201"; exon_number 1; exon_id "ENSE00001807680.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199203.1"; orig_coord_info "chr2,210265963,210266074,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	216351403	216351504	.	+	.	gene_id "Y_RNA^ENSG00000207303.1"; transcript_id "ENST00000384573.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.527-201"; exon_number 1; exon_id "ENSE00001808121.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207303.1"; orig_coord_info "chr2,216351403,216351504,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	222404985	222405095	.	+	.	gene_id "Y_RNA^ENSG00000200822.1"; transcript_id "ENST00000363952.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.188-201"; exon_number 1; exon_id "ENSE00001438715.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200822.1"; orig_coord_info "chr2,222404985,222405095,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	232828653	232828751	.	+	.	gene_id "Y_RNA^ENSG00000199781.1"; transcript_id "ENST00000362911.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.74-201"; exon_number 1; exon_id "ENSE00001437674.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199781.1"; orig_coord_info "chr2,232828653,232828751,+";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	233379843	233379955	.	-	.	gene_id "Y_RNA^ENSG00000201013.1"; transcript_id "ENST00000364143.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.208-201"; exon_number 1; exon_id "ENSE00001438906.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201013.1"; orig_coord_info "chr2,233379843,233379955,-";
Error, chr discrepancy in gtf info for chr2	ENSEMBL	exon	236153071	236153172	.	-	.	gene_id "Y_RNA^ENSG00000207049.1"; transcript_id "ENST00000384322.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.472-201"; exon_number 1; exon_id "ENSE00001808826.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207049.1"; orig_coord_info "chr2,236153071,236153172,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	5086178	5086279	.	-	.	gene_id "Y_RNA^ENSG00000207283.1"; transcript_id "ENST00000384553.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.519-201"; exon_number 1; exon_id "ENSE00001808615.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207283.1"; orig_coord_info "chr3,5086178,5086279,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	23273807	23273910	.	+	.	gene_id "Y_RNA^ENSG00000206728.1"; transcript_id "ENST00000384001.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.412-201"; exon_number 1; exon_id "ENSE00001499011.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206728.1"; orig_coord_info "chr3,23273807,23273910,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	27547757	27547858	.	-	.	gene_id "Y_RNA^ENSG00000238912.1"; transcript_id "ENST00000391229.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.645-201"; exon_number 1; exon_id "ENSE00001806842.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238912.1"; orig_coord_info "chr3,27547757,27547858,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	32045873	32045979	.	+	.	gene_id "Y_RNA^ENSG00000252398.1"; transcript_id "ENST00000516589.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.689-201"; exon_number 1; exon_id "ENSE00002088866.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252398.1"; orig_coord_info "chr3,32045873,32045979,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	37093133	37093234	.	-	.	gene_id "Y_RNA^ENSG00000206645.1"; transcript_id "ENST00000383918.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.387-201"; exon_number 1; exon_id "ENSE00001808804.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206645.1"; orig_coord_info "chr3,37093133,37093234,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	38014568	38014669	.	+	.	gene_id "Y_RNA^ENSG00000200579.1"; transcript_id "ENST00000363709.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.164-201"; exon_number 1; exon_id "ENSE00001808525.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200579.1"; orig_coord_info "chr3,38014568,38014669,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	38125292	38125394	.	-	.	gene_id "Y_RNA^ENSG00000201965.1"; transcript_id "ENST00000365095.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.313-201"; exon_number 1; exon_id "ENSE00001439858.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201965.1"; orig_coord_info "chr3,38125292,38125394,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	38505480	38505581	.	-	.	gene_id "Y_RNA^ENSG00000207512.1"; transcript_id "ENST00000384781.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.576-201"; exon_number 1; exon_id "ENSE00001808115.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207512.1"; orig_coord_info "chr3,38505480,38505581,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	41868998	41869095	.	-	.	gene_id "Y_RNA^ENSG00000251986.1"; transcript_id "ENST00000516177.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.665-201"; exon_number 1; exon_id "ENSE00002088454.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251986.1"; orig_coord_info "chr3,41868998,41869095,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	43472477	43472596	.	+	.	gene_id "Y_RNA^ENSG00000251811.1"; transcript_id "ENST00000516002.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.660-201"; exon_number 1; exon_id "ENSE00002088279.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251811.1"; orig_coord_info "chr3,43472477,43472596,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	45903187	45903298	.	+	.	gene_id "Y_RNA^ENSG00000201635.1"; transcript_id "ENST00000364765.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.280-201"; exon_number 1; exon_id "ENSE00001439528.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201635.1"; orig_coord_info "chr3,45903187,45903298,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	47931808	47931914	.	-	.	gene_id "Y_RNA^ENSG00000199591.1"; transcript_id "ENST00000362721.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.50-201"; exon_number 1; exon_id "ENSE00001808241.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199591.1"; orig_coord_info "chr3,47931808,47931914,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	48288587	48288694	.	+	.	gene_id "Y_RNA^ENSG00000199476.1"; transcript_id "ENST00000362606.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.37-201"; exon_number 1; exon_id "ENSE00001437369.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199476.1"; orig_coord_info "chr3,48288587,48288694,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	49270132	49270239	.	+	.	gene_id "Y_RNA^ENSG00000199546.1"; transcript_id "ENST00000362676.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.44-201"; exon_number 1; exon_id "ENSE00001437439.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199546.1"; orig_coord_info "chr3,49270132,49270239,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	53290640	53290751	.	+	.	gene_id "Y_RNA^ENSG00000274967.1"; transcript_id "ENST00000622394.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.788-201"; exon_number 1; exon_id "ENSE00003727148.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274967.1"; orig_coord_info "chr3,53290640,53290751,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	57493667	57493780	.	+	.	gene_id "Y_RNA^ENSG00000212392.1"; transcript_id "ENST00000391090.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.584-201"; exon_number 1; exon_id "ENSE00001508874.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212392.1"; orig_coord_info "chr3,57493667,57493780,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	61739127	61739229	.	-	.	gene_id "Y_RNA^ENSG00000252420.1"; transcript_id "ENST00000516611.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.691-201"; exon_number 1; exon_id "ENSE00002088888.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252420.1"; orig_coord_info "chr3,61739127,61739229,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	66003839	66003940	.	-	.	gene_id "Y_RNA^ENSG00000202071.1"; transcript_id "ENST00000365201.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.327-201"; exon_number 1; exon_id "ENSE00001808451.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202071.1"; orig_coord_info "chr3,66003839,66003940,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	75964980	75965069	.	-	.	gene_id "Y_RNA^ENSG00000222883.1"; transcript_id "ENST00000410951.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.619-201"; exon_number 1; exon_id "ENSE00001590769.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222883.1"; orig_coord_info "chr3,75964980,75965069,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	88431191	88431309	.	+	.	gene_id "Y_RNA^ENSG00000207316.1"; transcript_id "ENST00000384586.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.529-201"; exon_number 1; exon_id "ENSE00001499594.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207316.1"; orig_coord_info "chr3,88431191,88431309,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	93967926	93968020	.	+	.	gene_id "Y_RNA^ENSG00000201339.1"; transcript_id "ENST00000364469.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.240-201"; exon_number 1; exon_id "ENSE00001807591.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201339.1"; orig_coord_info "chr3,93967926,93968020,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	101458530	101458626	.	+	.	gene_id "Y_RNA^ENSG00000201554.1"; transcript_id "ENST00000364684.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.268-201"; exon_number 1; exon_id "ENSE00001439447.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201554.1"; orig_coord_info "chr3,101458530,101458626,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	101628310	101628406	.	-	.	gene_id "Y_RNA^ENSG00000212319.1"; transcript_id "ENST00000391017.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.581-201"; exon_number 1; exon_id "ENSE00001508801.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212319.1"; orig_coord_info "chr3,101628310,101628406,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	101647421	101647522	.	+	.	gene_id "Y_RNA^ENSG00000201511.1"; transcript_id "ENST00000364641.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.262-201"; exon_number 1; exon_id "ENSE00001809051.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201511.1"; orig_coord_info "chr3,101647421,101647522,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	101955077	101955185	.	+	.	gene_id "Y_RNA^ENSG00000202177.1"; transcript_id "ENST00000365307.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.336-201"; exon_number 1; exon_id "ENSE00001440070.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202177.1"; orig_coord_info "chr3,101955077,101955185,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	106515897	106515998	.	+	.	gene_id "Y_RNA^ENSG00000200610.1"; transcript_id "ENST00000363740.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.168-201"; exon_number 1; exon_id "ENSE00001438503.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200610.1"; orig_coord_info "chr3,106515897,106515998,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	106688678	106688779	.	+	.	gene_id "Y_RNA^ENSG00000200361.1"; transcript_id "ENST00000363491.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.142-201"; exon_number 1; exon_id "ENSE00001808785.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200361.1"; orig_coord_info "chr3,106688678,106688779,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	110727021	110727121	.	+	.	gene_id "Y_RNA^ENSG00000201426.1"; transcript_id "ENST00000364556.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.252-201"; exon_number 1; exon_id "ENSE00001439319.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201426.1"; orig_coord_info "chr3,110727021,110727121,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	120210320	120210421	.	+	.	gene_id "Y_RNA^ENSG00000206721.1"; transcript_id "ENST00000383994.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.411-201"; exon_number 1; exon_id "ENSE00001808896.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206721.1"; orig_coord_info "chr3,120210320,120210421,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	122025195	122025304	.	-	.	gene_id "Y_RNA^ENSG00000202388.1"; transcript_id "ENST00000365518.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.362-201"; exon_number 1; exon_id "ENSE00001440281.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202388.1"; orig_coord_info "chr3,122025195,122025304,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	125516979	125517086	.	+	.	gene_id "Y_RNA^ENSG00000201800.1"; transcript_id "ENST00000364930.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.296-201"; exon_number 1; exon_id "ENSE00001439693.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201800.1"; orig_coord_info "chr3,125516979,125517086,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	125528244	125528349	.	-	.	gene_id "Y_RNA^ENSG00000252965.1"; transcript_id "ENST00000517156.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.719-201"; exon_number 1; exon_id "ENSE00002089433.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252965.1"; orig_coord_info "chr3,125528244,125528349,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	127202372	127202473	.	-	.	gene_id "Y_RNA^ENSG00000212556.1"; transcript_id "ENST00000391254.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.588-201"; exon_number 1; exon_id "ENSE00001509038.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212556.1"; orig_coord_info "chr3,127202372,127202473,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	130914340	130914452	.	-	.	gene_id "Y_RNA^ENSG00000252894.2"; transcript_id "ENST00000517085.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.716-201"; exon_number 1; exon_id "ENSE00002089362.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252894.2"; orig_coord_info "chr3,130914340,130914452,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	149094353	149094462	.	-	.	gene_id "Y_RNA^ENSG00000201031.1"; transcript_id "ENST00000364161.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.210-201"; exon_number 1; exon_id "ENSE00001438924.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201031.1"; orig_coord_info "chr3,149094353,149094462,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	152449272	152449384	.	+	.	gene_id "Y_RNA^ENSG00000201217.1"; transcript_id "ENST00000364347.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.229-201"; exon_number 1; exon_id "ENSE00001808397.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201217.1"; orig_coord_info "chr3,152449272,152449384,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	153607377	153607479	.	+	.	gene_id "Y_RNA^ENSG00000200162.1"; transcript_id "ENST00000363292.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.116-201"; exon_number 1; exon_id "ENSE00001808226.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200162.1"; orig_coord_info "chr3,153607377,153607479,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	157153548	157153640	.	+	.	gene_id "Y_RNA^ENSG00000201778.1"; transcript_id "ENST00000364908.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.293-201"; exon_number 1; exon_id "ENSE00001439671.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201778.1"; orig_coord_info "chr3,157153548,157153640,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	165122713	165122823	.	-	.	gene_id "Y_RNA^ENSG00000200052.1"; transcript_id "ENST00000363182.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.105-201"; exon_number 1; exon_id "ENSE00001437945.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200052.1"; orig_coord_info "chr3,165122713,165122823,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	170244782	170244881	.	+	.	gene_id "Y_RNA^ENSG00000200118.1"; transcript_id "ENST00000363248.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.111-201"; exon_number 1; exon_id "ENSE00001438011.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200118.1"; orig_coord_info "chr3,170244782,170244881,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	171439526	171439627	.	+	.	gene_id "Y_RNA^ENSG00000222506.1"; transcript_id "ENST00000410574.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.604-201"; exon_number 1; exon_id "ENSE00001590392.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222506.1"; orig_coord_info "chr3,171439526,171439627,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	177120691	177120800	.	-	.	gene_id "Y_RNA^ENSG00000201343.1"; transcript_id "ENST00000364473.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.242-201"; exon_number 1; exon_id "ENSE00001439236.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201343.1"; orig_coord_info "chr3,177120691,177120800,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	179097731	179097840	.	+	.	gene_id "Y_RNA^ENSG00000200616.1"; transcript_id "ENST00000363746.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.170-201"; exon_number 1; exon_id "ENSE00001438509.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200616.1"; orig_coord_info "chr3,179097731,179097840,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	184086791	184086903	.	-	.	gene_id "Y_RNA^ENSG00000207351.1"; transcript_id "ENST00000384621.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.536-201"; exon_number 1; exon_id "ENSE00001808509.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207351.1"; orig_coord_info "chr3,184086791,184086903,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	191641135	191641237	.	+	.	gene_id "Y_RNA^ENSG00000201860.1"; transcript_id "ENST00000364990.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.301-201"; exon_number 1; exon_id "ENSE00001439753.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201860.1"; orig_coord_info "chr3,191641135,191641237,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	193624189	193624301	.	+	.	gene_id "Y_RNA^ENSG00000207370.1"; transcript_id "ENST00000384640.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.541-201"; exon_number 1; exon_id "ENSE00001807005.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207370.1"; orig_coord_info "chr3,193624189,193624301,+";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	195419436	195419546	.	-	.	gene_id "Y_RNA^ENSG00000207368.1"; transcript_id "ENST00000384638.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.540-201"; exon_number 1; exon_id "ENSE00001808794.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207368.1"; orig_coord_info "chr3,195419436,195419546,-";
Error, chr discrepancy in gtf info for chr3	ENSEMBL	exon	196202349	196202453	.	+	.	gene_id "Y_RNA^ENSG00000222335.1"; transcript_id "ENST00000410403.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.595-201"; exon_number 1; exon_id "ENSE00001590221.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222335.1"; orig_coord_info "chr3,196202349,196202453,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	1683420	1683529	.	-	.	gene_id "Y_RNA^ENSG00000207009.1"; transcript_id "ENST00000384282.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.464-201"; exon_number 1; exon_id "ENSE00001499291.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207009.1"; orig_coord_info "chr4,1683420,1683529,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	2615124	2615224	.	-	.	gene_id "Y_RNA^ENSG00000206738.1"; transcript_id "ENST00000384011.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.414-201"; exon_number 1; exon_id "ENSE00001808984.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206738.1"; orig_coord_info "chr4,2615124,2615224,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	5426885	5426984	.	-	.	gene_id "Y_RNA^ENSG00000252266.1"; transcript_id "ENST00000516457.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.682-201"; exon_number 1; exon_id "ENSE00002088734.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252266.1"; orig_coord_info "chr4,5426885,5426984,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	27223319	27223427	.	-	.	gene_id "Y_RNA^ENSG00000222206.1"; transcript_id "ENST00000410274.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.592-201"; exon_number 1; exon_id "ENSE00001590092.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222206.1"; orig_coord_info "chr4,27223319,27223427,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	37699895	37700002	.	-	.	gene_id "Y_RNA^ENSG00000207075.1"; transcript_id "ENST00000384347.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.476-201"; exon_number 1; exon_id "ENSE00001499356.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207075.1"; orig_coord_info "chr4,37699895,37700002,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	39441665	39441764	.	+	.	gene_id "Y_RNA^ENSG00000238797.1"; transcript_id "ENST00000459360.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.642-201"; exon_number 1; exon_id "ENSE00001808040.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238797.1"; orig_coord_info "chr4,39441665,39441764,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	39710085	39710176	.	-	.	gene_id "Y_RNA^ENSG00000252975.1"; transcript_id "ENST00000517166.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.720-201"; exon_number 1; exon_id "ENSE00002089443.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252975.1"; orig_coord_info "chr4,39710085,39710176,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	40826655	40826765	.	-	.	gene_id "Y_RNA^ENSG00000207195.1"; transcript_id "ENST00000384466.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.500-201"; exon_number 1; exon_id "ENSE00001808806.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207195.1"; orig_coord_info "chr4,40826655,40826765,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	41303237	41303337	.	-	.	gene_id "Y_RNA^ENSG00000207481.1"; transcript_id "ENST00000384750.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.570-201"; exon_number 1; exon_id "ENSE00001807342.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207481.1"; orig_coord_info "chr4,41303237,41303337,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	48153434	48153535	.	+	.	gene_id "Y_RNA^ENSG00000202014.1"; transcript_id "ENST00000365144.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.320-201"; exon_number 1; exon_id "ENSE00001808369.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202014.1"; orig_coord_info "chr4,48153434,48153535,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	52786537	52786638	.	+	.	gene_id "Y_RNA^ENSG00000199901.1"; transcript_id "ENST00000363031.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.89-201"; exon_number 1; exon_id "ENSE00001809113.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199901.1"; orig_coord_info "chr4,52786537,52786638,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	55412636	55412738	.	+	.	gene_id "Y_RNA^ENSG00000239040.1"; transcript_id "ENST00000459077.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.649-201"; exon_number 1; exon_id "ENSE00001808600.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000239040.1"; orig_coord_info "chr4,55412636,55412738,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	55501595	55501708	.	-	.	gene_id "Y_RNA^ENSG00000238585.1"; transcript_id "ENST00000459424.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.637-201"; exon_number 1; exon_id "ENSE00001807049.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238585.1"; orig_coord_info "chr4,55501595,55501708,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	56818218	56818314	.	-	.	gene_id "Y_RNA^ENSG00000251799.1"; transcript_id "ENST00000515990.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.658-201"; exon_number 1; exon_id "ENSE00002088267.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251799.1"; orig_coord_info "chr4,56818218,56818314,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	59533786	59533898	.	+	.	gene_id "Y_RNA^ENSG00000199780.1"; transcript_id "ENST00000362910.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.73-201"; exon_number 1; exon_id "ENSE00001808414.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199780.1"; orig_coord_info "chr4,59533786,59533898,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	59833175	59833276	.	+	.	gene_id "Y_RNA^ENSG00000201676.1"; transcript_id "ENST00000364806.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.284-201"; exon_number 1; exon_id "ENSE00001807474.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201676.1"; orig_coord_info "chr4,59833175,59833276,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	61906313	61906408	.	+	.	gene_id "Y_RNA^ENSG00000202169.1"; transcript_id "ENST00000365299.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.335-201"; exon_number 1; exon_id "ENSE00001440062.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202169.1"; orig_coord_info "chr4,61906313,61906408,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	75662120	75662213	.	-	.	gene_id "Y_RNA^ENSG00000201644.2"; transcript_id "ENST00000364774.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.281-201"; exon_number 1; exon_id "ENSE00001439537.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201644.2"; orig_coord_info "chr4,75662120,75662213,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	78632273	78632385	.	-	.	gene_id "Y_RNA^ENSG00000200998.1"; transcript_id "ENST00000364128.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.205-201"; exon_number 1; exon_id "ENSE00001808270.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200998.1"; orig_coord_info "chr4,78632273,78632385,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	82944738	82944845	.	-	.	gene_id "Y_RNA^ENSG00000199530.1"; transcript_id "ENST00000362660.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.42-201"; exon_number 1; exon_id "ENSE00001437423.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199530.1"; orig_coord_info "chr4,82944738,82944845,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	83636196	83636290	.	-	.	gene_id "Y_RNA^ENSG00000201633.1"; transcript_id "ENST00000364763.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.279-201"; exon_number 1; exon_id "ENSE00001439526.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201633.1"; orig_coord_info "chr4,83636196,83636290,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	87743952	87744053	.	-	.	gene_id "Y_RNA^ENSG00000200024.1"; transcript_id "ENST00000363154.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.101-201"; exon_number 1; exon_id "ENSE00001808365.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200024.1"; orig_coord_info "chr4,87743952,87744053,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	88330176	88330278	.	-	.	gene_id "Y_RNA^ENSG00000207480.1"; transcript_id "ENST00000384749.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.569-201"; exon_number 1; exon_id "ENSE00001499757.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207480.1"; orig_coord_info "chr4,88330176,88330278,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	112755816	112755917	.	-	.	gene_id "Y_RNA^ENSG00000202536.2"; transcript_id "ENST00000365666.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.381-201"; exon_number 1; exon_id "ENSE00001807546.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202536.2"; orig_coord_info "chr4,112755816,112755917,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	119947131	119947232	.	+	.	gene_id "Y_RNA^ENSG00000200553.1"; transcript_id "ENST00000363683.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.162-201"; exon_number 1; exon_id "ENSE00001809025.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200553.1"; orig_coord_info "chr4,119947131,119947232,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	121329069	121329170	.	-	.	gene_id "Y_RNA^ENSG00000207148.1"; transcript_id "ENST00000384419.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.492-201"; exon_number 1; exon_id "ENSE00001499427.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207148.1"; orig_coord_info "chr4,121329069,121329170,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	125362819	125362929	.	+	.	gene_id "Y_RNA^ENSG00000201297.1"; transcript_id "ENST00000364427.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.236-201"; exon_number 1; exon_id "ENSE00001439190.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201297.1"; orig_coord_info "chr4,125362819,125362929,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	127028107	127028219	.	-	.	gene_id "Y_RNA^ENSG00000199862.1"; transcript_id "ENST00000362992.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.79-201"; exon_number 1; exon_id "ENSE00001437755.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199862.1"; orig_coord_info "chr4,127028107,127028219,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	139200395	139200513	.	+	.	gene_id "Y_RNA^ENSG00000207384.1"; transcript_id "ENST00000384654.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.547-201"; exon_number 1; exon_id "ENSE00001499662.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207384.1"; orig_coord_info "chr4,139200395,139200513,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	140779039	140779141	.	-	.	gene_id "Y_RNA^ENSG00000222613.1"; transcript_id "ENST00000410681.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.610-201"; exon_number 1; exon_id "ENSE00001590499.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222613.1"; orig_coord_info "chr4,140779039,140779141,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	143309466	143309566	.	+	.	gene_id "Y_RNA^ENSG00000200049.1"; transcript_id "ENST00000363179.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.104-201"; exon_number 1; exon_id "ENSE00001437942.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200049.1"; orig_coord_info "chr4,143309466,143309566,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	145149537	145149649	.	-	.	gene_id "Y_RNA^ENSG00000238713.1"; transcript_id "ENST00000459374.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.638-201"; exon_number 1; exon_id "ENSE00001809236.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238713.1"; orig_coord_info "chr4,145149537,145149649,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	145958128	145958240	.	-	.	gene_id "Y_RNA^ENSG00000201314.1"; transcript_id "ENST00000364444.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.239-201"; exon_number 1; exon_id "ENSE00001807048.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201314.1"; orig_coord_info "chr4,145958128,145958240,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	153266909	153267010	.	-	.	gene_id "Y_RNA^ENSG00000201786.1"; transcript_id "ENST00000364916.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.294-201"; exon_number 1; exon_id "ENSE00001807650.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201786.1"; orig_coord_info "chr4,153266909,153267010,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	157064557	157064663	.	+	.	gene_id "Y_RNA^ENSG00000252524.1"; transcript_id "ENST00000516715.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.695-201"; exon_number 1; exon_id "ENSE00002088992.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252524.1"; orig_coord_info "chr4,157064557,157064663,+";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	157768013	157768113	.	-	.	gene_id "Y_RNA^ENSG00000200521.1"; transcript_id "ENST00000363651.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.158-201"; exon_number 1; exon_id "ENSE00001808936.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200521.1"; orig_coord_info "chr4,157768013,157768113,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	159064297	159064398	.	-	.	gene_id "Y_RNA^ENSG00000206978.1"; transcript_id "ENST00000384251.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.459-201"; exon_number 1; exon_id "ENSE00001499260.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206978.1"; orig_coord_info "chr4,159064297,159064398,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	166312935	166313034	.	-	.	gene_id "Y_RNA^ENSG00000206711.1"; transcript_id "ENST00000383984.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.406-201"; exon_number 1; exon_id "ENSE00001498994.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206711.1"; orig_coord_info "chr4,166312935,166313034,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	185415973	185416086	.	-	.	gene_id "Y_RNA^ENSG00000207231.1"; transcript_id "ENST00000384502.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.508-201"; exon_number 1; exon_id "ENSE00001499510.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207231.1"; orig_coord_info "chr4,185415973,185416086,-";
Error, chr discrepancy in gtf info for chr4	ENSEMBL	exon	185709873	185709967	.	-	.	gene_id "Y_RNA^ENSG00000207497.1"; transcript_id "ENST00000384766.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.574-201"; exon_number 1; exon_id "ENSE00001499774.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207497.1"; orig_coord_info "chr4,185709873,185709967,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	144087	144197	.	-	.	gene_id "Y_RNA^ENSG00000199540.1"; transcript_id "ENST00000362670.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.43-201"; exon_number 1; exon_id "ENSE00001437433.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199540.1"; orig_coord_info "chr5,144087,144197,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	2184710	2184820	.	+	.	gene_id "Y_RNA^ENSG00000201026.1"; transcript_id "ENST00000364156.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.209-201"; exon_number 1; exon_id "ENSE00001438919.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201026.1"; orig_coord_info "chr5,2184710,2184820,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	10292041	10292148	.	-	.	gene_id "Y_RNA^ENSG00000252341.1"; transcript_id "ENST00000516532.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.685-201"; exon_number 1; exon_id "ENSE00002088809.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252341.1"; orig_coord_info "chr5,10292041,10292148,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	10337277	10337386	.	+	.	gene_id "Y_RNA^ENSG00000252671.1"; transcript_id "ENST00000516862.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.705-201"; exon_number 1; exon_id "ENSE00002089139.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252671.1"; orig_coord_info "chr5,10337277,10337386,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	16623004	16623095	.	-	.	gene_id "Y_RNA^ENSG00000201370.1"; transcript_id "ENST00000364500.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.247-201"; exon_number 1; exon_id "ENSE00001439263.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201370.1"; orig_coord_info "chr5,16623004,16623095,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	17117576	17117686	.	-	.	gene_id "Y_RNA^ENSG00000206814.1"; transcript_id "ENST00000384087.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.432-201"; exon_number 1; exon_id "ENSE00001808325.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206814.1"; orig_coord_info "chr5,17117576,17117686,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	23299155	23299262	.	+	.	gene_id "Y_RNA^ENSG00000206912.1"; transcript_id "ENST00000384185.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.448-201"; exon_number 1; exon_id "ENSE00001499194.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206912.1"; orig_coord_info "chr5,23299155,23299262,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	23994502	23994603	.	-	.	gene_id "Y_RNA^ENSG00000200600.1"; transcript_id "ENST00000363730.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.166-201"; exon_number 1; exon_id "ENSE00001809066.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200600.1"; orig_coord_info "chr5,23994502,23994603,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	24910594	24910695	.	+	.	gene_id "Y_RNA^ENSG00000199911.1"; transcript_id "ENST00000363041.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.90-201"; exon_number 1; exon_id "ENSE00001808553.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199911.1"; orig_coord_info "chr5,24910594,24910695,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	31505684	31505788	.	+	.	gene_id "Y_RNA^ENSG00000206682.1"; transcript_id "ENST00000383955.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.399-201"; exon_number 1; exon_id "ENSE00001498965.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206682.1"; orig_coord_info "chr5,31505684,31505788,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	32134738	32134834	.	+	.	gene_id "Y_RNA^ENSG00000200065.1"; transcript_id "ENST00000363195.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.108-201"; exon_number 1; exon_id "ENSE00001437958.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200065.1"; orig_coord_info "chr5,32134738,32134834,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	41963868	41963969	.	-	.	gene_id "Y_RNA^ENSG00000199487.1"; transcript_id "ENST00000362617.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.38-201"; exon_number 1; exon_id "ENSE00001808046.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199487.1"; orig_coord_info "chr5,41963868,41963969,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	55040847	55040945	.	+	.	gene_id "Y_RNA^ENSG00000207229.1"; transcript_id "ENST00000384500.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.507-201"; exon_number 1; exon_id "ENSE00001499508.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207229.1"; orig_coord_info "chr5,55040847,55040945,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	57169108	57169209	.	-	.	gene_id "Y_RNA^ENSG00000207293.1"; transcript_id "ENST00000384563.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.523-201"; exon_number 1; exon_id "ENSE00001808599.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207293.1"; orig_coord_info "chr5,57169108,57169209,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	65123369	65123474	.	+	.	gene_id "Y_RNA^ENSG00000207439.1"; transcript_id "ENST00000384708.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.564-201"; exon_number 1; exon_id "ENSE00001499716.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207439.1"; orig_coord_info "chr5,65123369,65123474,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	72768702	72768811	.	+	.	gene_id "Y_RNA^ENSG00000206770.1"; transcript_id "ENST00000384043.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.420-201"; exon_number 1; exon_id "ENSE00001499053.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206770.1"; orig_coord_info "chr5,72768702,72768811,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	78317036	78317137	.	+	.	gene_id "Y_RNA^ENSG00000206714.1"; transcript_id "ENST00000383987.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.408-201"; exon_number 1; exon_id "ENSE00001807664.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206714.1"; orig_coord_info "chr5,78317036,78317137,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	79534853	79534954	.	+	.	gene_id "Y_RNA^ENSG00000207391.1"; transcript_id "ENST00000384661.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.551-201"; exon_number 1; exon_id "ENSE00001807742.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207391.1"; orig_coord_info "chr5,79534853,79534954,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	79562745	79562846	.	-	.	gene_id "Y_RNA^ENSG00000277818.1"; transcript_id "ENST00000364639.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.813-201"; exon_number 1; exon_id "ENSE00001439402.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000277818.1"; orig_coord_info "chr5,79562745,79562846,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	96962656	96962757	.	-	.	gene_id "Y_RNA^ENSG00000200884.1"; transcript_id "ENST00000364014.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.199-201"; exon_number 1; exon_id "ENSE00001807414.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200884.1"; orig_coord_info "chr5,96962656,96962757,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	98936638	98936747	.	-	.	gene_id "Y_RNA^ENSG00000200351.1"; transcript_id "ENST00000363481.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.141-201"; exon_number 1; exon_id "ENSE00001438244.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200351.1"; orig_coord_info "chr5,98936638,98936747,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	100021804	100021906	.	+	.	gene_id "Y_RNA^ENSG00000199378.1"; transcript_id "ENST00000362508.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.24-201"; exon_number 1; exon_id "ENSE00001806990.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199378.1"; orig_coord_info "chr5,100021804,100021906,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	108891437	108891546	.	+	.	gene_id "Y_RNA^ENSG00000207404.1"; transcript_id "ENST00000384673.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.555-201"; exon_number 1; exon_id "ENSE00001499681.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207404.1"; orig_coord_info "chr5,108891437,108891546,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	128371099	128371212	.	-	.	gene_id "Y_RNA^ENSG00000207290.1"; transcript_id "ENST00000384560.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.521-201"; exon_number 1; exon_id "ENSE00001499568.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207290.1"; orig_coord_info "chr5,128371099,128371212,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	132468147	132468257	.	+	.	gene_id "Y_RNA^ENSG00000202533.1"; transcript_id "ENST00000365663.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.380-201"; exon_number 1; exon_id "ENSE00001584442.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202533.1"; orig_coord_info "chr5,132468147,132468257,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	132945342	132945454	.	+	.	gene_id "Y_RNA^ENSG00000202417.1"; transcript_id "ENST00000365547.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.368-201"; exon_number 1; exon_id "ENSE00001440310.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202417.1"; orig_coord_info "chr5,132945342,132945454,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	132993099	132993200	.	-	.	gene_id "Y_RNA^ENSG00000199677.1"; transcript_id "ENST00000362807.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.58-201"; exon_number 1; exon_id "ENSE00001807822.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199677.1"; orig_coord_info "chr5,132993099,132993200,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	139554900	139555001	.	-	.	gene_id "Y_RNA^ENSG00000207020.1"; transcript_id "ENST00000384293.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.465-201"; exon_number 1; exon_id "ENSE00001807905.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207020.1"; orig_coord_info "chr5,139554900,139555001,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	140019492	140019592	.	+	.	gene_id "Y_RNA^ENSG00000207317.1"; transcript_id "ENST00000384587.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.530-201"; exon_number 1; exon_id "ENSE00001808697.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207317.1"; orig_coord_info "chr5,140019492,140019592,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	149940030	149940131	.	-	.	gene_id "Y_RNA^ENSG00000200334.1"; transcript_id "ENST00000363464.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.139-201"; exon_number 1; exon_id "ENSE00001809055.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200334.1"; orig_coord_info "chr5,149940030,149940131,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	150098406	150098506	.	+	.	gene_id "Y_RNA^ENSG00000199409.1"; transcript_id "ENST00000362539.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.26-201"; exon_number 1; exon_id "ENSE00001437302.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199409.1"; orig_coord_info "chr5,150098406,150098506,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	154705626	154705727	.	+	.	gene_id "Y_RNA^ENSG00000274472.1"; transcript_id "ENST00000613546.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.783-201"; exon_number 1; exon_id "ENSE00003717048.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274472.1"; orig_coord_info "chr5,154705626,154705727,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	160008445	160008546	.	+	.	gene_id "Y_RNA^ENSG00000199398.1"; transcript_id "ENST00000362528.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.25-201"; exon_number 1; exon_id "ENSE00001807068.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199398.1"; orig_coord_info "chr5,160008445,160008546,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	168791498	168791610	.	+	.	gene_id "Y_RNA^ENSG00000202345.1"; transcript_id "ENST00000365475.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.356-201"; exon_number 1; exon_id "ENSE00001807950.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202345.1"; orig_coord_info "chr5,168791498,168791610,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	172779982	172780094	.	-	.	gene_id "Y_RNA^ENSG00000206741.1"; transcript_id "ENST00000384014.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.416-201"; exon_number 1; exon_id "ENSE00001808796.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206741.1"; orig_coord_info "chr5,172779982,172780094,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	173052452	173052555	.	-	.	gene_id "Y_RNA^ENSG00000207210.1"; transcript_id "ENST00000384481.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.504-201"; exon_number 1; exon_id "ENSE00001499489.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207210.1"; orig_coord_info "chr5,173052452,173052555,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	173254190	173254290	.	-	.	gene_id "Y_RNA^ENSG00000201277.1"; transcript_id "ENST00000364407.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.233-201"; exon_number 1; exon_id "ENSE00001809257.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201277.1"; orig_coord_info "chr5,173254190,173254290,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	176556704	176556805	.	+	.	gene_id "Y_RNA^ENSG00000207420.1"; transcript_id "ENST00000384689.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.560-201"; exon_number 1; exon_id "ENSE00001807540.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207420.1"; orig_coord_info "chr5,176556704,176556805,+";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	179847035	179847130	.	-	.	gene_id "Y_RNA^ENSG00000252202.1"; transcript_id "ENST00000516393.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.676-201"; exon_number 1; exon_id "ENSE00002088670.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252202.1"; orig_coord_info "chr5,179847035,179847130,-";
Error, chr discrepancy in gtf info for chr5	ENSEMBL	exon	180909838	180909927	.	+	.	gene_id "Y_RNA^ENSG00000222852.1"; transcript_id "ENST00000410920.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.617-201"; exon_number 1; exon_id "ENSE00001807717.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222852.1"; orig_coord_info "chr5,180909838,180909927,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	7187582	7187686	.	-	.	gene_id "Y_RNA^ENSG00000201483.1"; transcript_id "ENST00000364613.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.258-201"; exon_number 1; exon_id "ENSE00001439376.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201483.1"; orig_coord_info "chr6,7187582,7187686,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	10674658	10674768	.	-	.	gene_id "Y_RNA^ENSG00000201048.1"; transcript_id "ENST00000364178.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.213-201"; exon_number 1; exon_id "ENSE00001438941.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201048.1"; orig_coord_info "chr6,10674658,10674768,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	16232231	16232330	.	-	.	gene_id "Y_RNA^ENSG00000207193.1"; transcript_id "ENST00000384464.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.499-201"; exon_number 1; exon_id "ENSE00001499472.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207193.1"; orig_coord_info "chr6,16232231,16232330,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	17737458	17737556	.	-	.	gene_id "Y_RNA^ENSG00000201442.2"; transcript_id "ENST00000364572.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.254-201"; exon_number 1; exon_id "ENSE00001979882.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201442.2"; orig_coord_info "chr6,17737458,17737556,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	18273165	18273266	.	-	.	gene_id "Y_RNA^ENSG00000199715.1"; transcript_id "ENST00000362845.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.64-201"; exon_number 1; exon_id "ENSE00001981750.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199715.1"; orig_coord_info "chr6,18273165,18273266,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	20500175	20500276	.	+	.	gene_id "Y_RNA^ENSG00000201683.1"; transcript_id "ENST00000364813.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.286-201"; exon_number 1; exon_id "ENSE00001969763.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201683.1"; orig_coord_info "chr6,20500175,20500276,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	25287432	25287533	.	-	.	gene_id "Y_RNA^ENSG00000207286.1"; transcript_id "ENST00000384556.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.520-201"; exon_number 1; exon_id "ENSE00001964906.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207286.1"; orig_coord_info "chr6,25287432,25287533,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	29750371	29750472	.	+	.	gene_id "Y_RNA^ENSG00000199290.1"; transcript_id "ENST00000362420.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.15-201"; exon_number 1; exon_id "ENSE00001808445.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199290.1"; orig_coord_info "chr6,29750371,29750472,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	30736304	30736414	.	-	.	gene_id "Y_RNA^ENSG00000201988.2"; transcript_id "ENST00000365118.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.316-201"; exon_number 1; exon_id "ENSE00001808725.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201988.2"; orig_coord_info "chr6,30736304,30736414,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	30932618	30932709	.	-	.	gene_id "Y_RNA^ENSG00000252761.1"; transcript_id "ENST00000516952.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.709-201"; exon_number 1; exon_id "ENSE00002089229.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252761.1"; orig_coord_info "chr6,30932618,30932709,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	31402152	31402250	.	-	.	gene_id "Y_RNA^ENSG00000199332.1"; transcript_id "ENST00000362462.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.19-201"; exon_number 1; exon_id "ENSE00001437225.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199332.1"; orig_coord_info "chr6,31402152,31402250,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	31496689	31496790	.	-	.	gene_id "Y_RNA^ENSG00000201680.1"; transcript_id "ENST00000383850.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.285-201"; exon_number 1; exon_id "ENSE00001807358.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201680.1"; orig_coord_info "chr6,31496689,31496790,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	31663288	31663401	.	+	.	gene_id "Y_RNA^ENSG00000201207.1"; transcript_id "ENST00000364337.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.226-201"; exon_number 1; exon_id "ENSE00001439100.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201207.1"; orig_coord_info "chr6,31663288,31663401,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	31778817	31778905	.	-	.	gene_id "Y_RNA^ENSG00000201555.1"; transcript_id "ENST00000364685.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.269-201"; exon_number 1; exon_id "ENSE00001439448.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201555.1"; orig_coord_info "chr6,31778817,31778905,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	34821445	34821542	.	+	.	gene_id "Y_RNA^ENSG00000206717.1"; transcript_id "ENST00000383990.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.409-201"; exon_number 1; exon_id "ENSE00001499000.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206717.1"; orig_coord_info "chr6,34821445,34821542,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	36672838	36672944	.	+	.	gene_id "Y_RNA^ENSG00000251864.1"; transcript_id "ENST00000516055.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.664-201"; exon_number 1; exon_id "ENSE00002088332.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251864.1"; orig_coord_info "chr6,36672838,36672944,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	38565950	38566055	.	+	.	gene_id "Y_RNA^ENSG00000199938.1"; transcript_id "ENST00000363068.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.94-201"; exon_number 1; exon_id "ENSE00001437831.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199938.1"; orig_coord_info "chr6,38565950,38566055,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	41917416	41917526	.	-	.	gene_id "Y_RNA^ENSG00000207371.1"; transcript_id "ENST00000384641.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.542-201"; exon_number 1; exon_id "ENSE00001499649.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207371.1"; orig_coord_info "chr6,41917416,41917526,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	47489067	47489170	.	+	.	gene_id "Y_RNA^ENSG00000199762.1"; transcript_id "ENST00000362892.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.71-201"; exon_number 1; exon_id "ENSE00001437655.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199762.1"; orig_coord_info "chr6,47489067,47489170,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	67625356	67625464	.	+	.	gene_id "Y_RNA^ENSG00000206672.1"; transcript_id "ENST00000383945.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.395-201"; exon_number 1; exon_id "ENSE00001807032.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206672.1"; orig_coord_info "chr6,67625356,67625464,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	75928513	75928625	.	+	.	gene_id "Y_RNA^ENSG00000200040.1"; transcript_id "ENST00000363170.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.102-201"; exon_number 1; exon_id "ENSE00001806944.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200040.1"; orig_coord_info "chr6,75928513,75928625,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	79301963	79302066	.	-	.	gene_id "Y_RNA^ENSG00000201464.1"; transcript_id "ENST00000364594.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.256-201"; exon_number 1; exon_id "ENSE00001439357.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201464.1"; orig_coord_info "chr6,79301963,79302066,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	85777639	85777755	.	-	.	gene_id "Y_RNA^ENSG00000200427.1"; transcript_id "ENST00000363557.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.148-201"; exon_number 1; exon_id "ENSE00001438320.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200427.1"; orig_coord_info "chr6,85777639,85777755,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	87826173	87826285	.	-	.	gene_id "Y_RNA^ENSG00000207131.1"; transcript_id "ENST00000384402.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.487-201"; exon_number 1; exon_id "ENSE00001994330.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207131.1"; orig_coord_info "chr6,87826173,87826285,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	89841329	89841424	.	+	.	gene_id "Y_RNA^ENSG00000199630.1"; transcript_id "ENST00000362760.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.52-201"; exon_number 1; exon_id "ENSE00001437523.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199630.1"; orig_coord_info "chr6,89841329,89841424,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	89898283	89898392	.	-	.	gene_id "Y_RNA^ENSG00000252891.1"; transcript_id "ENST00000517082.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.715-201"; exon_number 1; exon_id "ENSE00002089359.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252891.1"; orig_coord_info "chr6,89898283,89898392,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	99526097	99526205	.	+	.	gene_id "Y_RNA^ENSG00000274603.1"; transcript_id "ENST00000384290.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.785-201"; exon_number 1; exon_id "ENSE00001499299.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274603.1"; orig_coord_info "chr6,99526097,99526205,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	99642237	99642347	.	-	.	gene_id "Y_RNA^ENSG00000199303.1"; transcript_id "ENST00000362433.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.17-201"; exon_number 1; exon_id "ENSE00001437196.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199303.1"; orig_coord_info "chr6,99642237,99642347,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	106420706	106420807	.	+	.	gene_id "Y_RNA^ENSG00000207499.1"; transcript_id "ENST00000384768.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.575-201"; exon_number 1; exon_id "ENSE00002011129.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207499.1"; orig_coord_info "chr6,106420706,106420807,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	106454828	106454929	.	+	.	gene_id "Y_RNA^ENSG00000200314.1"; transcript_id "ENST00000363444.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.136-201"; exon_number 1; exon_id "ENSE00001988579.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200314.1"; orig_coord_info "chr6,106454828,106454929,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	108060818	108060930	.	+	.	gene_id "Y_RNA^ENSG00000238490.1"; transcript_id "ENST00000364811.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.634-201"; exon_number 1; exon_id "ENSE00002012070.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238490.1"; orig_coord_info "chr6,108060818,108060930,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	119057880	119057974	.	+	.	gene_id "Y_RNA^ENSG00000222649.1"; transcript_id "ENST00000410717.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.612-201"; exon_number 1; exon_id "ENSE00001590535.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222649.1"; orig_coord_info "chr6,119057880,119057974,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	121378797	121378898	.	-	.	gene_id "Y_RNA^ENSG00000207403.1"; transcript_id "ENST00000384672.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.554-201"; exon_number 1; exon_id "ENSE00001807577.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207403.1"; orig_coord_info "chr6,121378797,121378898,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	128584390	128584491	.	+	.	gene_id "Y_RNA^ENSG00000206982.1"; transcript_id "ENST00000384255.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.460-201"; exon_number 1; exon_id "ENSE00001807544.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206982.1"; orig_coord_info "chr6,128584390,128584491,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	128761717	128761808	.	-	.	gene_id "Y_RNA^ENSG00000202200.1"; transcript_id "ENST00000365330.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.340-201"; exon_number 1; exon_id "ENSE00001440093.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202200.1"; orig_coord_info "chr6,128761717,128761808,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	130573996	130574112	.	-	.	gene_id "Y_RNA^ENSG00000202438.1"; transcript_id "ENST00000365568.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.369-201"; exon_number 1; exon_id "ENSE00001440331.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202438.1"; orig_coord_info "chr6,130573996,130574112,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	134283092	134283193	.	+	.	gene_id "Y_RNA^ENSG00000201309.1"; transcript_id "ENST00000364439.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.237-201"; exon_number 1; exon_id "ENSE00001973749.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201309.1"; orig_coord_info "chr6,134283092,134283193,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	135474504	135474609	.	-	.	gene_id "Y_RNA^ENSG00000201012.1"; transcript_id "ENST00000364142.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.207-201"; exon_number 1; exon_id "ENSE00001438905.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201012.1"; orig_coord_info "chr6,135474504,135474609,-";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	136934765	136934866	.	+	.	gene_id "Y_RNA^ENSG00000207247.1"; transcript_id "ENST00000384518.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.512-201"; exon_number 1; exon_id "ENSE00002018300.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207247.1"; orig_coord_info "chr6,136934765,136934866,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	137784374	137784486	.	+	.	gene_id "Y_RNA^ENSG00000207300.1"; transcript_id "ENST00000384570.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.525-201"; exon_number 1; exon_id "ENSE00002008563.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207300.1"; orig_coord_info "chr6,137784374,137784486,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	149631437	149631549	.	+	.	gene_id "Y_RNA^ENSG00000207292.1"; transcript_id "ENST00000384562.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.522-201"; exon_number 1; exon_id "ENSE00001992931.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207292.1"; orig_coord_info "chr6,149631437,149631549,+";
Error, chr discrepancy in gtf info for chr6	ENSEMBL	exon	151378000	151378099	.	-	.	gene_id "Y_RNA^ENSG00000252615.1"; transcript_id "ENST00000516806.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.700-201"; exon_number 1; exon_id "ENSE00002089083.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252615.1"; orig_coord_info "chr6,151378000,151378099,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	4811188	4811289	.	-	.	gene_id "Y_RNA^ENSG00000206895.1"; transcript_id "ENST00000384168.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.445-201"; exon_number 1; exon_id "ENSE00001807039.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206895.1"; orig_coord_info "chr7,4811188,4811289,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	6004283	6004385	.	-	.	gene_id "Y_RNA^ENSG00000201990.1"; transcript_id "ENST00000365120.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.317-201"; exon_number 1; exon_id "ENSE00001439883.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201990.1"; orig_coord_info "chr7,6004283,6004385,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	6212638	6212740	.	-	.	gene_id "Y_RNA^ENSG00000202273.1"; transcript_id "ENST00000365403.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.348-201"; exon_number 1; exon_id "ENSE00001440166.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202273.1"; orig_coord_info "chr7,6212638,6212740,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	7102573	7102681	.	-	.	gene_id "Y_RNA^ENSG00000201218.1"; transcript_id "ENST00000364348.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.230-201"; exon_number 1; exon_id "ENSE00001439111.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201218.1"; orig_coord_info "chr7,7102573,7102681,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	10901978	10902074	.	+	.	gene_id "Y_RNA^ENSG00000201774.1"; transcript_id "ENST00000364904.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.292-201"; exon_number 1; exon_id "ENSE00001809080.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201774.1"; orig_coord_info "chr7,10901978,10902074,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	14010669	14010763	.	-	.	gene_id "Y_RNA^ENSG00000252374.1"; transcript_id "ENST00000516565.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.688-201"; exon_number 1; exon_id "ENSE00002088842.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252374.1"; orig_coord_info "chr7,14010669,14010763,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	23491792	23491893	.	-	.	gene_id "Y_RNA^ENSG00000200847.1"; transcript_id "ENST00000363977.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.192-201"; exon_number 1; exon_id "ENSE00001808531.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200847.1"; orig_coord_info "chr7,23491792,23491893,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	36337667	36337778	.	-	.	gene_id "Y_RNA^ENSG00000201432.1"; transcript_id "ENST00000364562.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.253-201"; exon_number 1; exon_id "ENSE00001439325.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201432.1"; orig_coord_info "chr7,36337667,36337778,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	37435115	37435216	.	+	.	gene_id "Y_RNA^ENSG00000201566.1"; transcript_id "ENST00000364696.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.272-201"; exon_number 1; exon_id "ENSE00001808002.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201566.1"; orig_coord_info "chr7,37435115,37435216,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	40128121	40128232	.	-	.	gene_id "Y_RNA^ENSG00000199273.1"; transcript_id "ENST00000362403.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.13-201"; exon_number 1; exon_id "ENSE00001437166.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199273.1"; orig_coord_info "chr7,40128121,40128232,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	43096732	43096844	.	+	.	gene_id "Y_RNA^ENSG00000201933.1"; transcript_id "ENST00000365063.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.310-201"; exon_number 1; exon_id "ENSE00001439826.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201933.1"; orig_coord_info "chr7,43096732,43096844,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	67297653	67297754	.	-	.	gene_id "Y_RNA^ENSG00000201565.1"; transcript_id "ENST00000364695.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.271-201"; exon_number 1; exon_id "ENSE00001809083.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201565.1"; orig_coord_info "chr7,67297653,67297754,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	69507510	69507622	.	-	.	gene_id "Y_RNA^ENSG00000200857.1"; transcript_id "ENST00000363987.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.195-201"; exon_number 1; exon_id "ENSE00001807306.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200857.1"; orig_coord_info "chr7,69507510,69507622,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	72983360	72983461	.	-	.	gene_id "Y_RNA^ENSG00000276178.1"; transcript_id "ENST00000364992.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.799-201"; exon_number 1; exon_id "ENSE00001807020.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000276178.1"; orig_coord_info "chr7,72983360,72983461,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	73011144	73011245	.	+	.	gene_id "Y_RNA^ENSG00000201282.1"; transcript_id "ENST00000364412.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.235-201"; exon_number 1; exon_id "ENSE00001809225.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201282.1"; orig_coord_info "chr7,73011144,73011245,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	73039085	73039186	.	+	.	gene_id "Y_RNA^ENSG00000273927.1"; transcript_id "ENST00000516982.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.777-201"; exon_number 1; exon_id "ENSE00002089259.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000273927.1"; orig_coord_info "chr7,73039085,73039186,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	73067231	73067332	.	+	.	gene_id "Y_RNA^ENSG00000274984.1"; transcript_id "ENST00000622480.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.789-201"; exon_number 1; exon_id "ENSE00003727684.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274984.1"; orig_coord_info "chr7,73067231,73067332,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	73095357	73095458	.	+	.	gene_id "Y_RNA^ENSG00000199913.1"; transcript_id "ENST00000363043.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.92-201"; exon_number 1; exon_id "ENSE00001808809.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199913.1"; orig_coord_info "chr7,73095357,73095458,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	73403788	73403889	.	-	.	gene_id "Y_RNA^ENSG00000202035.1"; transcript_id "ENST00000365165.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.324-201"; exon_number 1; exon_id "ENSE00001807660.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202035.1"; orig_coord_info "chr7,73403788,73403889,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	74895816	74895917	.	+	.	gene_id "Y_RNA^ENSG00000239069.1"; transcript_id "ENST00000459002.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.650-201"; exon_number 1; exon_id "ENSE00001808563.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000239069.1"; orig_coord_info "chr7,74895816,74895917,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	75297990	75298091	.	-	.	gene_id "Y_RNA^ENSG00000267828.1"; transcript_id "ENST00000598668.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.771-201"; exon_number 1; exon_id "ENSE00003033148.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000267828.1"; orig_coord_info "chr7,75297990,75298091,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	75325959	75326060	.	-	.	gene_id "Y_RNA^ENSG00000202021.1"; transcript_id "ENST00000365151.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.322-201"; exon_number 1; exon_id "ENSE00001807876.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202021.1"; orig_coord_info "chr7,75325959,75326060,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	75353885	75353986	.	-	.	gene_id "Y_RNA^ENSG00000199870.1"; transcript_id "ENST00000363000.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.82-201"; exon_number 1; exon_id "ENSE00001808094.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199870.1"; orig_coord_info "chr7,75353885,75353986,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	75381638	75381739	.	+	.	gene_id "Y_RNA^ENSG00000275930.1"; transcript_id "ENST00000364268.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.796-201"; exon_number 1; exon_id "ENSE00001807177.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000275930.1"; orig_coord_info "chr7,75381638,75381739,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	75513025	75513126	.	-	.	gene_id "Y_RNA^ENSG00000200874.1"; transcript_id "ENST00000364004.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.197-201"; exon_number 1; exon_id "ENSE00001806821.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200874.1"; orig_coord_info "chr7,75513025,75513126,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	76523605	76523706	.	+	.	gene_id "Y_RNA^ENSG00000238560.1"; transcript_id "ENST00000362637.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.636-201"; exon_number 1; exon_id "ENSE00001807382.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238560.1"; orig_coord_info "chr7,76523605,76523706,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	77013583	77013684	.	+	.	gene_id "Y_RNA^ENSG00000201885.1"; transcript_id "ENST00000365015.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.306-201"; exon_number 1; exon_id "ENSE00001808178.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201885.1"; orig_coord_info "chr7,77013583,77013684,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	77041647	77041748	.	+	.	gene_id "Y_RNA^ENSG00000201959.1"; transcript_id "ENST00000365089.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.312-201"; exon_number 1; exon_id "ENSE00001808345.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201959.1"; orig_coord_info "chr7,77041647,77041748,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	77895880	77895992	.	+	.	gene_id "Y_RNA^ENSG00000222432.1"; transcript_id "ENST00000410500.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.601-201"; exon_number 1; exon_id "ENSE00001590318.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222432.1"; orig_coord_info "chr7,77895880,77895992,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	87218611	87218712	.	-	.	gene_id "Y_RNA^ENSG00000200397.1"; transcript_id "ENST00000363527.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.145-201"; exon_number 1; exon_id "ENSE00001807281.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200397.1"; orig_coord_info "chr7,87218611,87218712,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	90251923	90252020	.	+	.	gene_id "Y_RNA^ENSG00000207488.1"; transcript_id "ENST00000384757.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.572-201"; exon_number 1; exon_id "ENSE00001809284.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207488.1"; orig_coord_info "chr7,90251923,90252020,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	92202243	92202334	.	-	.	gene_id "Y_RNA^ENSG00000200769.1"; transcript_id "ENST00000363899.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.186-201"; exon_number 1; exon_id "ENSE00001438662.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200769.1"; orig_coord_info "chr7,92202243,92202334,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	99936610	99936711	.	+	.	gene_id "Y_RNA^ENSG00000199711.1"; transcript_id "ENST00000362841.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.63-201"; exon_number 1; exon_id "ENSE00001807749.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199711.1"; orig_coord_info "chr7,99936610,99936711,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	100330777	100330877	.	-	.	gene_id "Y_RNA^ENSG00000201913.1"; transcript_id "ENST00000365043.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.308-201"; exon_number 1; exon_id "ENSE00001439806.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201913.1"; orig_coord_info "chr7,100330777,100330877,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	102336869	102336970	.	+	.	gene_id "Y_RNA^ENSG00000200552.1"; transcript_id "ENST00000363682.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.161-201"; exon_number 1; exon_id "ENSE00001806949.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200552.1"; orig_coord_info "chr7,102336869,102336970,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	103433461	103433561	.	-	.	gene_id "Y_RNA^ENSG00000251852.1"; transcript_id "ENST00000516043.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.663-201"; exon_number 1; exon_id "ENSE00002088320.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251852.1"; orig_coord_info "chr7,103433461,103433561,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	103434994	103435092	.	-	.	gene_id "Y_RNA^ENSG00000252047.1"; transcript_id "ENST00000516238.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.669-201"; exon_number 1; exon_id "ENSE00002088515.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252047.1"; orig_coord_info "chr7,103434994,103435092,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	115207894	115207996	.	-	.	gene_id "Y_RNA^ENSG00000199764.1"; transcript_id "ENST00000362894.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.72-201"; exon_number 1; exon_id "ENSE00001437657.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199764.1"; orig_coord_info "chr7,115207894,115207996,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	115833273	115833373	.	-	.	gene_id "Y_RNA^ENSG00000199224.1"; transcript_id "ENST00000362354.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.9-201"; exon_number 1; exon_id "ENSE00001809281.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199224.1"; orig_coord_info "chr7,115833273,115833373,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	116909877	116909964	.	-	.	gene_id "Y_RNA^ENSG00000252115.1"; transcript_id "ENST00000516306.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.673-201"; exon_number 1; exon_id "ENSE00002088583.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252115.1"; orig_coord_info "chr7,116909877,116909964,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	129954693	129954794	.	+	.	gene_id "Y_RNA^ENSG00000199516.1"; transcript_id "ENST00000362646.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.41-201"; exon_number 1; exon_id "ENSE00001806895.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199516.1"; orig_coord_info "chr7,129954693,129954794,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	136129980	136130081	.	-	.	gene_id "Y_RNA^ENSG00000206705.1"; transcript_id "ENST00000383978.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.404-201"; exon_number 1; exon_id "ENSE00001807446.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206705.1"; orig_coord_info "chr7,136129980,136130081,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	138175045	138175136	.	+	.	gene_id "Y_RNA^ENSG00000252820.1"; transcript_id "ENST00000517011.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.712-201"; exon_number 1; exon_id "ENSE00002089288.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252820.1"; orig_coord_info "chr7,138175045,138175136,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	140094697	140094792	.	-	.	gene_id "Y_RNA^ENSG00000251728.1"; transcript_id "ENST00000515919.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.655-201"; exon_number 1; exon_id "ENSE00002088196.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251728.1"; orig_coord_info "chr7,140094697,140094792,-";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	140609847	140609955	.	+	.	gene_id "Y_RNA^ENSG00000201354.1"; transcript_id "ENST00000364484.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.244-201"; exon_number 1; exon_id "ENSE00001439247.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201354.1"; orig_coord_info "chr7,140609847,140609955,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	146311720	146311822	.	+	.	gene_id "Y_RNA^ENSG00000274118.1"; transcript_id "ENST00000620301.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.781-201"; exon_number 1; exon_id "ENSE00003754256.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274118.1"; orig_coord_info "chr7,146311720,146311822,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	151916331	151916418	.	+	.	gene_id "Y_RNA^ENSG00000222941.2"; transcript_id "ENST00000411009.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.620-201"; exon_number 1; exon_id "ENSE00001590827.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222941.2"; orig_coord_info "chr7,151916331,151916418,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	152402780	152402893	.	+	.	gene_id "Y_RNA^ENSG00000253088.1"; transcript_id "ENST00000517279.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.722-201"; exon_number 1; exon_id "ENSE00002089556.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000253088.1"; orig_coord_info "chr7,152402780,152402893,+";
Error, chr discrepancy in gtf info for chr7	ENSEMBL	exon	156186122	156186223	.	-	.	gene_id "Y_RNA^ENSG00000207061.1"; transcript_id "ENST00000384333.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.473-201"; exon_number 1; exon_id "ENSE00001808138.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207061.1"; orig_coord_info "chr7,156186122,156186223,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	13160178	13160279	.	+	.	gene_id "Y_RNA^ENSG00000200630.1"; transcript_id "ENST00000363760.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.171-201"; exon_number 1; exon_id "ENSE00001807549.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200630.1"; orig_coord_info "chr8,13160178,13160279,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	14332555	14332663	.	+	.	gene_id "Y_RNA^ENSG00000206950.1"; transcript_id "ENST00000384223.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.453-201"; exon_number 1; exon_id "ENSE00001499232.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206950.1"; orig_coord_info "chr8,14332555,14332663,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	38744020	38744131	.	+	.	gene_id "Y_RNA^ENSG00000207258.1"; transcript_id "ENST00000384528.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.514-201"; exon_number 1; exon_id "ENSE00001807008.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207258.1"; orig_coord_info "chr8,38744020,38744131,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	41803349	41803450	.	+	.	gene_id "Y_RNA^ENSG00000207101.1"; transcript_id "ENST00000384373.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.481-201"; exon_number 1; exon_id "ENSE00001808863.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207101.1"; orig_coord_info "chr8,41803349,41803450,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	42949388	42949495	.	-	.	gene_id "Y_RNA^ENSG00000202514.1"; transcript_id "ENST00000365644.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.377-201"; exon_number 1; exon_id "ENSE00001440407.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202514.1"; orig_coord_info "chr8,42949388,42949495,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	47805079	47805179	.	-	.	gene_id "Y_RNA^ENSG00000207450.1"; transcript_id "ENST00000384719.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.565-201"; exon_number 1; exon_id "ENSE00001499727.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207450.1"; orig_coord_info "chr8,47805079,47805179,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	65592731	65592820	.	+	.	gene_id "Y_RNA^ENSG00000200714.1"; transcript_id "ENST00000363844.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.179-201"; exon_number 1; exon_id "ENSE00001438607.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200714.1"; orig_coord_info "chr8,65592731,65592820,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	66653469	66653576	.	+	.	gene_id "Y_RNA^ENSG00000201365.1"; transcript_id "ENST00000364495.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.246-201"; exon_number 1; exon_id "ENSE00001439258.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201365.1"; orig_coord_info "chr8,66653469,66653576,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	68223318	68223402	.	-	.	gene_id "Y_RNA^ENSG00000252210.1"; transcript_id "ENST00000516401.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.677-201"; exon_number 1; exon_id "ENSE00002088678.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252210.1"; orig_coord_info "chr8,68223318,68223402,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	70780914	70781008	.	-	.	gene_id "Y_RNA^ENSG00000223220.1"; transcript_id "ENST00000411288.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.626-201"; exon_number 1; exon_id "ENSE00001591106.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223220.1"; orig_coord_info "chr8,70780914,70781008,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	74376687	74376793	.	+	.	gene_id "Y_RNA^ENSG00000207417.1"; transcript_id "ENST00000384686.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.559-201"; exon_number 1; exon_id "ENSE00001499694.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207417.1"; orig_coord_info "chr8,74376687,74376793,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	80484589	80484683	.	-	.	gene_id "Y_RNA^ENSG00000277604.1"; transcript_id "ENST00000516058.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.809-201"; exon_number 1; exon_id "ENSE00002088335.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000277604.1"; orig_coord_info "chr8,80484589,80484683,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	94713715	94713812	.	-	.	gene_id "Y_RNA^ENSG00000199701.1"; transcript_id "ENST00000362831.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.60-201"; exon_number 1; exon_id "ENSE00001809007.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199701.1"; orig_coord_info "chr8,94713715,94713812,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	96309221	96309322	.	-	.	gene_id "Y_RNA^ENSG00000199732.1"; transcript_id "ENST00000362862.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.66-201"; exon_number 1; exon_id "ENSE00001808110.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199732.1"; orig_coord_info "chr8,96309221,96309322,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	97772313	97772425	.	+	.	gene_id "Y_RNA^ENSG00000202399.1"; transcript_id "ENST00000365529.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.363-201"; exon_number 1; exon_id "ENSE00001809121.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202399.1"; orig_coord_info "chr8,97772313,97772425,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	99527826	99527927	.	+	.	gene_id "Y_RNA^ENSG00000206699.1"; transcript_id "ENST00000383972.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.402-201"; exon_number 1; exon_id "ENSE00001808170.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206699.1"; orig_coord_info "chr8,99527826,99527927,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	100158868	100158975	.	+	.	gene_id "Y_RNA^ENSG00000202310.1"; transcript_id "ENST00000365440.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.353-201"; exon_number 1; exon_id "ENSE00001440203.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202310.1"; orig_coord_info "chr8,100158868,100158975,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	100185138	100185239	.	+	.	gene_id "Y_RNA^ENSG00000199667.1"; transcript_id "ENST00000362797.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.55-201"; exon_number 1; exon_id "ENSE00001809119.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199667.1"; orig_coord_info "chr8,100185138,100185239,+";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	100755099	100755195	.	-	.	gene_id "Y_RNA^ENSG00000202001.2"; transcript_id "ENST00000365131.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.318-201"; exon_number 1; exon_id "ENSE00001439894.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202001.2"; orig_coord_info "chr8,100755099,100755195,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	102950467	102950564	.	-	.	gene_id "Y_RNA^ENSG00000201216.1"; transcript_id "ENST00000364346.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.228-201"; exon_number 1; exon_id "ENSE00001439109.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201216.1"; orig_coord_info "chr8,102950467,102950564,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	105929126	105929238	.	-	.	gene_id "Y_RNA^ENSG00000201627.1"; transcript_id "ENST00000364757.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.278-201"; exon_number 1; exon_id "ENSE00001439520.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201627.1"; orig_coord_info "chr8,105929126,105929238,-";
Error, chr discrepancy in gtf info for chr8	ENSEMBL	exon	113950886	113950998	.	+	.	gene_id "Y_RNA^ENSG00000206719.1"; transcript_id "ENST00000383992.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.410-201"; exon_number 1; exon_id "ENSE00001808919.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206719.1"; orig_coord_info "chr8,113950886,113950998,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	12885321	12885417	.	+	.	gene_id "Y_RNA^ENSG00000222658.1"; transcript_id "ENST00000410726.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.613-201"; exon_number 1; exon_id "ENSE00001808003.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222658.1"; orig_coord_info "chr9,12885321,12885417,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	19089593	19089688	.	+	.	gene_id "Y_RNA^ENSG00000201118.1"; transcript_id "ENST00000364248.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.221-201"; exon_number 1; exon_id "ENSE00001439011.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201118.1"; orig_coord_info "chr9,19089593,19089688,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	21160235	21160336	.	-	.	gene_id "Y_RNA^ENSG00000199635.1"; transcript_id "ENST00000362765.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.53-201"; exon_number 1; exon_id "ENSE00001806921.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199635.1"; orig_coord_info "chr9,21160235,21160336,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	32820261	32820350	.	+	.	gene_id "Y_RNA^ENSG00000272113.2"; transcript_id "ENST00000607168.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.773-201"; exon_number 1; exon_id "ENSE00003698356.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000272113.2"; orig_coord_info "chr9,32820261,32820350,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	33352788	33352874	.	-	.	gene_id "Y_RNA^ENSG00000200544.1"; transcript_id "ENST00000363674.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.159-201"; exon_number 1; exon_id "ENSE00001438437.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200544.1"; orig_coord_info "chr9,33352788,33352874,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	33830978	33831078	.	+	.	gene_id "Y_RNA^ENSG00000200834.1"; transcript_id "ENST00000363964.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.190-201"; exon_number 1; exon_id "ENSE00001808542.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200834.1"; orig_coord_info "chr9,33830978,33831078,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	34389943	34390051	.	-	.	gene_id "Y_RNA^ENSG00000207032.1"; transcript_id "ENST00000384305.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.469-201"; exon_number 1; exon_id "ENSE00001499314.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207032.1"; orig_coord_info "chr9,34389943,34390051,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	37160137	37160237	.	+	.	gene_id "Y_RNA^ENSG00000200502.1"; transcript_id "ENST00000363632.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.155-201"; exon_number 1; exon_id "ENSE00001438395.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200502.1"; orig_coord_info "chr9,37160137,37160237,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	37322259	37322371	.	+	.	gene_id "Y_RNA^ENSG00000206784.1"; transcript_id "ENST00000384057.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.423-201"; exon_number 1; exon_id "ENSE00001808176.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206784.1"; orig_coord_info "chr9,37322259,37322371,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	41672295	41672406	.	-	.	gene_id "Y_RNA^ENSG00000278028.1"; transcript_id "ENST00000616655.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.815-201"; exon_number 1; exon_id "ENSE00003744035.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000278028.1"; orig_coord_info "chr9,41672295,41672406,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	61642383	61642494	.	+	.	gene_id "Y_RNA^ENSG00000238933.1"; transcript_id "ENST00000459194.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.647-201"; exon_number 1; exon_id "ENSE00001807563.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238933.1"; orig_coord_info "chr9,61642383,61642494,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	61883640	61883751	.	-	.	gene_id "Y_RNA^ENSG00000238749.1"; transcript_id "ENST00000459296.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.640-201"; exon_number 1; exon_id "ENSE00001807398.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238749.1"; orig_coord_info "chr9,61883640,61883751,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	65573384	65573495	.	+	.	gene_id "Y_RNA^ENSG00000276723.1"; transcript_id "ENST00000614432.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.803-201"; exon_number 1; exon_id "ENSE00003716340.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000276723.1"; orig_coord_info "chr9,65573384,65573495,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	67697076	67697187	.	+	.	gene_id "Y_RNA^ENSG00000275904.1"; transcript_id "ENST00000619475.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.795-201"; exon_number 1; exon_id "ENSE00003750905.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000275904.1"; orig_coord_info "chr9,67697076,67697187,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	70311607	70311701	.	-	.	gene_id "Y_RNA^ENSG00000239180.1"; transcript_id "ENST00000459091.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.653-201"; exon_number 1; exon_id "ENSE00001807846.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000239180.1"; orig_coord_info "chr9,70311607,70311701,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	71902455	71902550	.	-	.	gene_id "Y_RNA^ENSG00000200922.1"; transcript_id "ENST00000364052.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.201-201"; exon_number 1; exon_id "ENSE00001438815.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200922.1"; orig_coord_info "chr9,71902455,71902550,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	75181520	75181621	.	-	.	gene_id "Y_RNA^ENSG00000200041.1"; transcript_id "ENST00000363171.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.103-201"; exon_number 1; exon_id "ENSE00001807573.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200041.1"; orig_coord_info "chr9,75181520,75181621,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	83992932	83993033	.	+	.	gene_id "Y_RNA^ENSG00000202523.1"; transcript_id "ENST00000365653.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.379-201"; exon_number 1; exon_id "ENSE00001808386.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202523.1"; orig_coord_info "chr9,83992932,83993033,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	93417855	93417966	.	+	.	gene_id "Y_RNA^ENSG00000201074.1"; transcript_id "ENST00000364204.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.215-201"; exon_number 1; exon_id "ENSE00001438967.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201074.1"; orig_coord_info "chr9,93417855,93417966,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	96103079	96103174	.	-	.	gene_id "Y_RNA^ENSG00000201938.1"; transcript_id "ENST00000365068.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.311-201"; exon_number 1; exon_id "ENSE00001439831.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201938.1"; orig_coord_info "chr9,96103079,96103174,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	97915690	97915796	.	+	.	gene_id "Y_RNA^ENSG00000201830.1"; transcript_id "ENST00000364960.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.298-201"; exon_number 1; exon_id "ENSE00001809144.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201830.1"; orig_coord_info "chr9,97915690,97915796,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	109042386	109042487	.	-	.	gene_id "Y_RNA^ENSG00000199331.1"; transcript_id "ENST00000362461.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.18-201"; exon_number 1; exon_id "ENSE00001807851.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199331.1"; orig_coord_info "chr9,109042386,109042487,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	109324685	109324796	.	+	.	gene_id "Y_RNA^ENSG00000207329.1"; transcript_id "ENST00000384599.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.534-201"; exon_number 1; exon_id "ENSE00001499607.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207329.1"; orig_coord_info "chr9,109324685,109324796,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	110934406	110934507	.	+	.	gene_id "Y_RNA^ENSG00000207401.1"; transcript_id "ENST00000384670.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.553-201"; exon_number 1; exon_id "ENSE00001808248.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207401.1"; orig_coord_info "chr9,110934406,110934507,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	112169286	112169397	.	+	.	gene_id "Y_RNA^ENSG00000200261.1"; transcript_id "ENST00000363391.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.128-201"; exon_number 1; exon_id "ENSE00001808247.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200261.1"; orig_coord_info "chr9,112169286,112169397,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	114615455	114615568	.	-	.	gene_id "Y_RNA^ENSG00000201749.1"; transcript_id "ENST00000364879.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.290-201"; exon_number 1; exon_id "ENSE00001809228.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201749.1"; orig_coord_info "chr9,114615455,114615568,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	127470875	127470987	.	+	.	gene_id "Y_RNA^ENSG00000200788.1"; transcript_id "ENST00000363918.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.187-201"; exon_number 1; exon_id "ENSE00001807300.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200788.1"; orig_coord_info "chr9,127470875,127470987,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	127832635	127832743	.	-	.	gene_id "Y_RNA^ENSG00000222421.1"; transcript_id "ENST00000410489.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.599-201"; exon_number 1; exon_id "ENSE00001590307.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222421.1"; orig_coord_info "chr9,127832635,127832743,-";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	130120806	130120912	.	+	.	gene_id "Y_RNA^ENSG00000223188.1"; transcript_id "ENST00000411256.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.625-201"; exon_number 1; exon_id "ENSE00001591074.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223188.1"; orig_coord_info "chr9,130120806,130120912,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	133302470	133302563	.	+	.	gene_id "Y_RNA^ENSG00000201843.1"; transcript_id "ENST00000364973.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.299-201"; exon_number 1; exon_id "ENSE00001439736.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201843.1"; orig_coord_info "chr9,133302470,133302563,+";
Error, chr discrepancy in gtf info for chr9	ENSEMBL	exon	133337728	133337824	.	-	.	gene_id "Y_RNA^ENSG00000201451.1"; transcript_id "ENST00000364581.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.255-201"; exon_number 1; exon_id "ENSE00001439344.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201451.1"; orig_coord_info "chr9,133337728,133337824,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	6245731	6245831	.	-	.	gene_id "Y_RNA^ENSG00000238366.1"; transcript_id "ENST00000459607.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.631-201"; exon_number 1; exon_id "ENSE00001807057.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238366.1"; orig_coord_info "chr10,6245731,6245831,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	10232611	10232712	.	+	.	gene_id "Y_RNA^ENSG00000200849.1"; transcript_id "ENST00000363979.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.193-201"; exon_number 1; exon_id "ENSE00001807381.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200849.1"; orig_coord_info "chr10,10232611,10232712,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	13511206	13511313	.	-	.	gene_id "Y_RNA^ENSG00000202508.1"; transcript_id "ENST00000365638.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.376-201"; exon_number 1; exon_id "ENSE00001440401.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202508.1"; orig_coord_info "chr10,13511206,13511313,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	17403508	17403620	.	+	.	gene_id "Y_RNA^ENSG00000251803.1"; transcript_id "ENST00000515994.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.659-201"; exon_number 1; exon_id "ENSE00002088271.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251803.1"; orig_coord_info "chr10,17403508,17403620,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	21481716	21481817	.	+	.	gene_id "Y_RNA^ENSG00000199222.1"; transcript_id "ENST00000362352.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.7-201"; exon_number 1; exon_id "ENSE00001808153.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199222.1"; orig_coord_info "chr10,21481716,21481817,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	31756042	31756136	.	-	.	gene_id "Y_RNA^ENSG00000222412.1"; transcript_id "ENST00000410480.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.598-201"; exon_number 1; exon_id "ENSE00001590298.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222412.1"; orig_coord_info "chr10,31756042,31756136,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	32056746	32056839	.	+	.	gene_id "Y_RNA^ENSG00000206660.1"; transcript_id "ENST00000383933.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.391-201"; exon_number 1; exon_id "ENSE00001808133.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206660.1"; orig_coord_info "chr10,32056746,32056839,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	34201979	34202074	.	-	.	gene_id "Y_RNA^ENSG00000199200.2"; transcript_id "ENST00000362330.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.2-201"; exon_number 1; exon_id "ENSE00001437093.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199200.2"; orig_coord_info "chr10,34201979,34202074,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	36626015	36626138	.	-	.	gene_id "Y_RNA^ENSG00000207271.1"; transcript_id "ENST00000384541.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.516-201"; exon_number 1; exon_id "ENSE00001499549.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207271.1"; orig_coord_info "chr10,36626015,36626138,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	37303000	37303109	.	-	.	gene_id "Y_RNA^ENSG00000252621.1"; transcript_id "ENST00000516812.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.701-201"; exon_number 1; exon_id "ENSE00002089089.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252621.1"; orig_coord_info "chr10,37303000,37303109,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	37994863	37994975	.	+	.	gene_id "Y_RNA^ENSG00000206840.1"; transcript_id "ENST00000384113.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.437-201"; exon_number 1; exon_id "ENSE00001807098.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206840.1"; orig_coord_info "chr10,37994863,37994975,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	52852607	52852703	.	+	.	gene_id "Y_RNA^ENSG00000201196.1"; transcript_id "ENST00000364326.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.225-201"; exon_number 1; exon_id "ENSE00001807409.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201196.1"; orig_coord_info "chr10,52852607,52852703,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	60081741	60081854	.	+	.	gene_id "Y_RNA^ENSG00000202190.1"; transcript_id "ENST00000365320.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.338-201"; exon_number 1; exon_id "ENSE00001440083.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202190.1"; orig_coord_info "chr10,60081741,60081854,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	68503152	68503259	.	+	.	gene_id "Y_RNA^ENSG00000207438.1"; transcript_id "ENST00000384707.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.563-201"; exon_number 1; exon_id "ENSE00001499715.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207438.1"; orig_coord_info "chr10,68503152,68503259,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	68735720	68735823	.	-	.	gene_id "Y_RNA^ENSG00000195401.2"; transcript_id "ENST00000352915.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.1-201"; exon_number 1; exon_id "ENSE00001392276.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000195401.2"; orig_coord_info "chr10,68735720,68735823,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	72220752	72220852	.	+	.	gene_id "Y_RNA^ENSG00000200170.1"; transcript_id "ENST00000363300.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.118-201"; exon_number 1; exon_id "ENSE00001808265.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200170.1"; orig_coord_info "chr10,72220752,72220852,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	72654165	72654276	.	-	.	gene_id "Y_RNA^ENSG00000201881.1"; transcript_id "ENST00000365011.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.304-201"; exon_number 1; exon_id "ENSE00001439774.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201881.1"; orig_coord_info "chr10,72654165,72654276,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	73082494	73082595	.	-	.	gene_id "Y_RNA^ENSG00000201047.1"; transcript_id "ENST00000364177.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.212-201"; exon_number 1; exon_id "ENSE00001808024.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201047.1"; orig_coord_info "chr10,73082494,73082595,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	73192223	73192325	.	-	.	gene_id "Y_RNA^ENSG00000199201.1"; transcript_id "ENST00000362331.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.3-201"; exon_number 1; exon_id "ENSE00001809247.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199201.1"; orig_coord_info "chr10,73192223,73192325,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	73346936	73347048	.	+	.	gene_id "Y_RNA^ENSG00000207473.1"; transcript_id "ENST00000384742.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.568-201"; exon_number 1; exon_id "ENSE00001499750.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207473.1"; orig_coord_info "chr10,73346936,73347048,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	74551392	74551493	.	+	.	gene_id "Y_RNA^ENSG00000206756.1"; transcript_id "ENST00000384029.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.418-201"; exon_number 1; exon_id "ENSE00001807089.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206756.1"; orig_coord_info "chr10,74551392,74551493,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	88585638	88585733	.	-	.	gene_id "Y_RNA^ENSG00000201548.1"; transcript_id "ENST00000364678.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.266-201"; exon_number 1; exon_id "ENSE00001808709.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201548.1"; orig_coord_info "chr10,88585638,88585733,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	90880040	90880179	.	-	.	gene_id "Y_RNA^ENSG00000222305.1"; transcript_id "ENST00000410373.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.594-201"; exon_number 1; exon_id "ENSE00001590191.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222305.1"; orig_coord_info "chr10,90880040,90880179,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	92272147	92272250	.	-	.	gene_id "Y_RNA^ENSG00000199881.1"; transcript_id "ENST00000363011.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.84-201"; exon_number 1; exon_id "ENSE00001437774.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199881.1"; orig_coord_info "chr10,92272147,92272250,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	92710499	92710608	.	-	.	gene_id "Y_RNA^ENSG00000201412.1"; transcript_id "ENST00000364542.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.250-201"; exon_number 1; exon_id "ENSE00001439305.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201412.1"; orig_coord_info "chr10,92710499,92710608,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	97421195	97421307	.	-	.	gene_id "Y_RNA^ENSG00000200737.1"; transcript_id "ENST00000363867.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.180-201"; exon_number 1; exon_id "ENSE00001806924.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200737.1"; orig_coord_info "chr10,97421195,97421307,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	100398352	100398446	.	-	.	gene_id "Y_RNA^ENSG00000212325.1"; transcript_id "ENST00000391023.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.582-201"; exon_number 1; exon_id "ENSE00001808190.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212325.1"; orig_coord_info "chr10,100398352,100398446,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	100907174	100907280	.	-	.	gene_id "Y_RNA^ENSG00000222072.1"; transcript_id "ENST00000410140.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.590-201"; exon_number 1; exon_id "ENSE00001589958.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222072.1"; orig_coord_info "chr10,100907174,100907280,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	101952605	101952704	.	-	.	gene_id "Y_RNA^ENSG00000222430.1"; transcript_id "ENST00000410498.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.600-201"; exon_number 1; exon_id "ENSE00001590316.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222430.1"; orig_coord_info "chr10,101952605,101952704,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	103673158	103673265	.	+	.	gene_id "Y_RNA^ENSG00000222503.1"; transcript_id "ENST00000410571.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.603-201"; exon_number 1; exon_id "ENSE00001590389.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222503.1"; orig_coord_info "chr10,103673158,103673265,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	110642678	110642785	.	-	.	gene_id "Y_RNA^ENSG00000223302.1"; transcript_id "ENST00000411370.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.630-201"; exon_number 1; exon_id "ENSE00001591188.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223302.1"; orig_coord_info "chr10,110642678,110642785,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	121846600	121846700	.	+	.	gene_id "Y_RNA^ENSG00000201884.1"; transcript_id "ENST00000365014.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.305-201"; exon_number 1; exon_id "ENSE00001439777.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201884.1"; orig_coord_info "chr10,121846600,121846700,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	124766196	124766297	.	+	.	gene_id "Y_RNA^ENSG00000199466.1"; transcript_id "ENST00000362596.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.34-201"; exon_number 1; exon_id "ENSE00001807144.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199466.1"; orig_coord_info "chr10,124766196,124766297,+";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	124814958	124815062	.	-	.	gene_id "Y_RNA^ENSG00000207494.1"; transcript_id "ENST00000384763.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.573-201"; exon_number 1; exon_id "ENSE00001499771.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207494.1"; orig_coord_info "chr10,124814958,124815062,-";
Error, chr discrepancy in gtf info for chr10	ENSEMBL	exon	130505106	130505201	.	+	.	gene_id "Y_RNA^ENSG00000222997.1"; transcript_id "ENST00000411065.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.621-201"; exon_number 1; exon_id "ENSE00001590883.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222997.1"; orig_coord_info "chr10,130505106,130505201,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	2372638	2372750	.	+	.	gene_id "Y_RNA^ENSG00000199550.1"; transcript_id "ENST00000362680.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.45-201"; exon_number 1; exon_id "ENSE00001808225.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199550.1"; orig_coord_info "chr11,2372638,2372750,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	3663815	3663911	.	-	.	gene_id "Y_RNA^ENSG00000201279.1"; transcript_id "ENST00000364409.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.234-201"; exon_number 1; exon_id "ENSE00001439172.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201279.1"; orig_coord_info "chr11,3663815,3663911,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	3665164	3665259	.	-	.	gene_id "Y_RNA^ENSG00000200201.1"; transcript_id "ENST00000363331.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.122-201"; exon_number 1; exon_id "ENSE00001438094.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200201.1"; orig_coord_info "chr11,3665164,3665259,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	8877417	8877518	.	-	.	gene_id "Y_RNA^ENSG00000202276.1"; transcript_id "ENST00000365406.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.349-201"; exon_number 1; exon_id "ENSE00001807339.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202276.1"; orig_coord_info "chr11,8877417,8877518,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	8943380	8943467	.	-	.	gene_id "Y_RNA^ENSG00000223080.1"; transcript_id "ENST00000411148.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.624-201"; exon_number 1; exon_id "ENSE00001590966.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223080.1"; orig_coord_info "chr11,8943380,8943467,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	10725903	10726004	.	+	.	gene_id "Y_RNA^ENSG00000206858.1"; transcript_id "ENST00000384131.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.442-201"; exon_number 1; exon_id "ENSE00001807817.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206858.1"; orig_coord_info "chr11,10725903,10726004,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	13686550	13686658	.	-	.	gene_id "Y_RNA^ENSG00000200685.1"; transcript_id "ENST00000363815.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.176-201"; exon_number 1; exon_id "ENSE00001438578.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200685.1"; orig_coord_info "chr11,13686550,13686658,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	24455911	24456010	.	+	.	gene_id "Y_RNA^ENSG00000207252.1"; transcript_id "ENST00000384522.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.513-201"; exon_number 1; exon_id "ENSE00001808113.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207252.1"; orig_coord_info "chr11,24455911,24456010,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	33004250	33004345	.	-	.	gene_id "Y_RNA^ENSG00000200615.1"; transcript_id "ENST00000363745.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.169-201"; exon_number 1; exon_id "ENSE00001808501.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200615.1"; orig_coord_info "chr11,33004250,33004345,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	33171381	33171490	.	-	.	gene_id "Y_RNA^ENSG00000206808.1"; transcript_id "ENST00000384081.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.430-201"; exon_number 1; exon_id "ENSE00001499091.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206808.1"; orig_coord_info "chr11,33171381,33171490,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	33196547	33196637	.	-	.	gene_id "Y_RNA^ENSG00000200485.1"; transcript_id "ENST00000363615.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.153-201"; exon_number 1; exon_id "ENSE00001438378.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200485.1"; orig_coord_info "chr11,33196547,33196637,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	34189174	34189275	.	+	.	gene_id "Y_RNA^ENSG00000201867.1"; transcript_id "ENST00000364997.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.302-201"; exon_number 1; exon_id "ENSE00001808346.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201867.1"; orig_coord_info "chr11,34189174,34189275,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	40351564	40351672	.	+	.	gene_id "Y_RNA^ENSG00000206806.1"; transcript_id "ENST00000384079.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.429-201"; exon_number 1; exon_id "ENSE00001808251.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206806.1"; orig_coord_info "chr11,40351564,40351672,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	43331261	43331356	.	+	.	gene_id "Y_RNA^ENSG00000252652.1"; transcript_id "ENST00000516843.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.702-201"; exon_number 1; exon_id "ENSE00002089120.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252652.1"; orig_coord_info "chr11,43331261,43331356,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	47726894	47726992	.	-	.	gene_id "Y_RNA^ENSG00000200090.1"; transcript_id "ENST00000363220.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.110-201"; exon_number 1; exon_id "ENSE00001437983.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200090.1"; orig_coord_info "chr11,47726894,47726992,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	47820200	47820289	.	-	.	gene_id "Y_RNA^ENSG00000252874.2"; transcript_id "ENST00000517065.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.714-201"; exon_number 1; exon_id "ENSE00002089342.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252874.2"; orig_coord_info "chr11,47820200,47820289,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	64296037	64296138	.	+	.	gene_id "Y_RNA^ENSG00000207024.1"; transcript_id "ENST00000384297.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.467-201"; exon_number 1; exon_id "ENSE00001807890.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207024.1"; orig_coord_info "chr11,64296037,64296138,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	70705167	70705269	.	-	.	gene_id "Y_RNA^ENSG00000207196.1"; transcript_id "ENST00000384467.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.501-201"; exon_number 1; exon_id "ENSE00001807263.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207196.1"; orig_coord_info "chr11,70705167,70705269,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	72766004	72766116	.	+	.	gene_id "Y_RNA^ENSG00000202522.1"; transcript_id "ENST00000365652.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.378-201"; exon_number 1; exon_id "ENSE00001807105.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202522.1"; orig_coord_info "chr11,72766004,72766116,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	75835215	75835323	.	-	.	gene_id "Y_RNA^ENSG00000200256.1"; transcript_id "ENST00000363386.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.127-201"; exon_number 1; exon_id "ENSE00001438149.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200256.1"; orig_coord_info "chr11,75835215,75835323,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	75837544	75837645	.	-	.	gene_id "Y_RNA^ENSG00000199362.1"; transcript_id "ENST00000362492.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.22-201"; exon_number 1; exon_id "ENSE00001807192.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199362.1"; orig_coord_info "chr11,75837544,75837645,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	76404140	76404252	.	-	.	gene_id "Y_RNA^ENSG00000201756.1"; transcript_id "ENST00000364886.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.291-201"; exon_number 1; exon_id "ENSE00001807318.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201756.1"; orig_coord_info "chr11,76404140,76404252,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	77691650	77691751	.	+	.	gene_id "Y_RNA^ENSG00000206816.1"; transcript_id "ENST00000384089.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.433-201"; exon_number 1; exon_id "ENSE00001808478.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206816.1"; orig_coord_info "chr11,77691650,77691751,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	88099995	88100105	.	+	.	gene_id "Y_RNA^ENSG00000206690.1"; transcript_id "ENST00000383963.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.400-201"; exon_number 1; exon_id "ENSE00001498973.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206690.1"; orig_coord_info "chr11,88099995,88100105,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	93719603	93719715	.	+	.	gene_id "Y_RNA^ENSG00000199875.1"; transcript_id "ENST00000363005.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.83-201"; exon_number 1; exon_id "ENSE00001809065.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199875.1"; orig_coord_info "chr11,93719603,93719715,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	93827622	93827734	.	+	.	gene_id "Y_RNA^ENSG00000206911.1"; transcript_id "ENST00000384184.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.447-201"; exon_number 1; exon_id "ENSE00001808686.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206911.1"; orig_coord_info "chr11,93827622,93827734,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	108084913	108085014	.	+	.	gene_id "Y_RNA^ENSG00000200855.1"; transcript_id "ENST00000363985.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.194-201"; exon_number 1; exon_id "ENSE00001808793.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200855.1"; orig_coord_info "chr11,108084913,108085014,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	108229503	108229604	.	-	.	gene_id "Y_RNA^ENSG00000206967.1"; transcript_id "ENST00000384240.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.458-201"; exon_number 1; exon_id "ENSE00001808986.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206967.1"; orig_coord_info "chr11,108229503,108229604,-";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	118836010	118836111	.	+	.	gene_id "Y_RNA^ENSG00000201535.2"; transcript_id "ENST00000364665.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.264-201"; exon_number 1; exon_id "ENSE00001439428.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201535.2"; orig_coord_info "chr11,118836010,118836111,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	118970498	118970595	.	+	.	gene_id "Y_RNA^ENSG00000222529.1"; transcript_id "ENST00000410597.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.607-201"; exon_number 1; exon_id "ENSE00001590415.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222529.1"; orig_coord_info "chr11,118970498,118970595,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	118994560	118994655	.	+	.	gene_id "Y_RNA^ENSG00000283691.1"; transcript_id "ENST00000628531.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.830-201"; exon_number 1; exon_id "ENSE00003774014.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000283691.1"; orig_coord_info "chr11,118994560,118994655,+";
Error, chr discrepancy in gtf info for chr11	ENSEMBL	exon	129030459	129030572	.	+	.	gene_id "Y_RNA^ENSG00000206847.1"; transcript_id "ENST00000384120.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.440-201"; exon_number 1; exon_id "ENSE00001499130.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206847.1"; orig_coord_info "chr11,129030459,129030572,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	6234345	6234455	.	-	.	gene_id "Y_RNA^ENSG00000202318.1"; transcript_id "ENST00000365448.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.354-201"; exon_number 1; exon_id "ENSE00001440211.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202318.1"; orig_coord_info "chr12,6234345,6234455,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	7784403	7784511	.	-	.	gene_id "Y_RNA^ENSG00000201549.1"; transcript_id "ENST00000364679.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.267-201"; exon_number 1; exon_id "ENSE00001439442.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201549.1"; orig_coord_info "chr12,7784403,7784511,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	7800361	7800467	.	-	.	gene_id "Y_RNA^ENSG00000199912.1"; transcript_id "ENST00000363042.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.91-201"; exon_number 1; exon_id "ENSE00001807004.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199912.1"; orig_coord_info "chr12,7800361,7800467,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	7850717	7850818	.	-	.	gene_id "Y_RNA^ENSG00000201663.1"; transcript_id "ENST00000364793.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.282-201"; exon_number 1; exon_id "ENSE00001807569.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201663.1"; orig_coord_info "chr12,7850717,7850818,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	7976259	7976360	.	+	.	gene_id "Y_RNA^ENSG00000206636.1"; transcript_id "ENST00000383909.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.384-201"; exon_number 1; exon_id "ENSE00001807239.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206636.1"; orig_coord_info "chr12,7976259,7976360,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	8592476	8592585	.	+	.	gene_id "Y_RNA^ENSG00000238943.1"; transcript_id "ENST00000459455.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.648-201"; exon_number 1; exon_id "ENSE00001807523.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238943.1"; orig_coord_info "chr12,8592476,8592585,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	17710934	17711046	.	+	.	gene_id "Y_RNA^ENSG00000206662.1"; transcript_id "ENST00000383935.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.392-201"; exon_number 1; exon_id "ENSE00001807362.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206662.1"; orig_coord_info "chr12,17710934,17711046,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	27752874	27752986	.	+	.	gene_id "Y_RNA^ENSG00000252585.1"; transcript_id "ENST00000516776.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.697-201"; exon_number 1; exon_id "ENSE00002089053.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252585.1"; orig_coord_info "chr12,27752874,27752986,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	31506303	31506404	.	-	.	gene_id "Y_RNA^ENSG00000201228.1"; transcript_id "ENST00000364358.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.231-201"; exon_number 1; exon_id "ENSE00001808140.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201228.1"; orig_coord_info "chr12,31506303,31506404,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	32396050	32396147	.	-	.	gene_id "Y_RNA^ENSG00000207176.1"; transcript_id "ENST00000384447.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.497-201"; exon_number 1; exon_id "ENSE00001499455.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207176.1"; orig_coord_info "chr12,32396050,32396147,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	32705403	32705506	.	-	.	gene_id "Y_RNA^ENSG00000201563.1"; transcript_id "ENST00000364693.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.270-201"; exon_number 1; exon_id "ENSE00001439456.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201563.1"; orig_coord_info "chr12,32705403,32705506,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	33982465	33982566	.	-	.	gene_id "Y_RNA^ENSG00000201624.1"; transcript_id "ENST00000364754.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.277-201"; exon_number 1; exon_id "ENSE00001808421.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201624.1"; orig_coord_info "chr12,33982465,33982566,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	38274448	38274549	.	-	.	gene_id "Y_RNA^ENSG00000253016.1"; transcript_id "ENST00000517207.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.721-201"; exon_number 1; exon_id "ENSE00002089484.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000253016.1"; orig_coord_info "chr12,38274448,38274549,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	42454720	42454821	.	+	.	gene_id "Y_RNA^ENSG00000207142.1"; transcript_id "ENST00000384413.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.490-201"; exon_number 1; exon_id "ENSE00001807940.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207142.1"; orig_coord_info "chr12,42454720,42454821,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	44880868	44880969	.	-	.	gene_id "Y_RNA^ENSG00000201788.1"; transcript_id "ENST00000364918.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.295-201"; exon_number 1; exon_id "ENSE00001807743.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201788.1"; orig_coord_info "chr12,44880868,44880969,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	48809911	48810016	.	+	.	gene_id "Y_RNA^ENSG00000207467.1"; transcript_id "ENST00000384736.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.567-201"; exon_number 1; exon_id "ENSE00001499744.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207467.1"; orig_coord_info "chr12,48809911,48810016,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	49132853	49132947	.	-	.	gene_id "Y_RNA^ENSG00000200309.1"; transcript_id "ENST00000363439.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.135-201"; exon_number 1; exon_id "ENSE00001438202.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200309.1"; orig_coord_info "chr12,49132853,49132947,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	50743568	50743684	.	+	.	gene_id "Y_RNA^ENSG00000200428.1"; transcript_id "ENST00000363558.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.149-201"; exon_number 1; exon_id "ENSE00001438321.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200428.1"; orig_coord_info "chr12,50743568,50743684,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	50939927	50940026	.	-	.	gene_id "Y_RNA^ENSG00000199740.1"; transcript_id "ENST00000362870.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.67-201"; exon_number 1; exon_id "ENSE00001807780.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199740.1"; orig_coord_info "chr12,50939927,50940026,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	51156868	51156977	.	-	.	gene_id "Y_RNA^ENSG00000200953.1"; transcript_id "ENST00000364083.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.202-201"; exon_number 1; exon_id "ENSE00001808722.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200953.1"; orig_coord_info "chr12,51156868,51156977,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	54099191	54099302	.	-	.	gene_id "Y_RNA^ENSG00000202146.1"; transcript_id "ENST00000365276.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.334-201"; exon_number 1; exon_id "ENSE00001807978.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202146.1"; orig_coord_info "chr12,54099191,54099302,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	60341824	60341941	.	-	.	gene_id "Y_RNA^ENSG00000252607.1"; transcript_id "ENST00000516798.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.698-201"; exon_number 1; exon_id "ENSE00002089075.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252607.1"; orig_coord_info "chr12,60341824,60341941,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	62935701	62935802	.	+	.	gene_id "Y_RNA^ENSG00000252660.1"; transcript_id "ENST00000516851.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.704-201"; exon_number 1; exon_id "ENSE00002089128.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252660.1"; orig_coord_info "chr12,62935701,62935802,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	70906917	70907018	.	+	.	gene_id "Y_RNA^ENSG00000207387.1"; transcript_id "ENST00000384657.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.549-201"; exon_number 1; exon_id "ENSE00001807390.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207387.1"; orig_coord_info "chr12,70906917,70907018,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	88430442	88430550	.	+	.	gene_id "Y_RNA^ENSG00000199245.1"; transcript_id "ENST00000362375.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.11-201"; exon_number 1; exon_id "ENSE00001437138.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199245.1"; orig_coord_info "chr12,88430442,88430550,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	92170353	92170453	.	-	.	gene_id "Y_RNA^ENSG00000199895.1"; transcript_id "ENST00000363025.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.87-201"; exon_number 1; exon_id "ENSE00001437788.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199895.1"; orig_coord_info "chr12,92170353,92170453,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	93021606	93021712	.	+	.	gene_id "Y_RNA^ENSG00000207365.1"; transcript_id "ENST00000384635.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.539-201"; exon_number 1; exon_id "ENSE00001499643.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207365.1"; orig_coord_info "chr12,93021606,93021712,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	93460725	93460826	.	-	.	gene_id "Y_RNA^ENSG00000200011.1"; transcript_id "ENST00000363141.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.100-201"; exon_number 1; exon_id "ENSE00001808432.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200011.1"; orig_coord_info "chr12,93460725,93460826,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	95275770	95275872	.	+	.	gene_id "Y_RNA^ENSG00000202470.1"; transcript_id "ENST00000365600.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.373-201"; exon_number 1; exon_id "ENSE00001808769.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202470.1"; orig_coord_info "chr12,95275770,95275872,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	95617689	95617786	.	+	.	gene_id "Y_RNA^ENSG00000212448.1"; transcript_id "ENST00000391146.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.586-201"; exon_number 1; exon_id "ENSE00001508930.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212448.1"; orig_coord_info "chr12,95617689,95617786,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	96979528	96979629	.	-	.	gene_id "Y_RNA^ENSG00000202368.1"; transcript_id "ENST00000365498.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.359-201"; exon_number 1; exon_id "ENSE00001808526.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202368.1"; orig_coord_info "chr12,96979528,96979629,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	100257688	100257790	.	-	.	gene_id "Y_RNA^ENSG00000206790.1"; transcript_id "ENST00000384063.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.424-201"; exon_number 1; exon_id "ENSE00001808156.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206790.1"; orig_coord_info "chr12,100257688,100257790,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	101446825	101446932	.	+	.	gene_id "Y_RNA^ENSG00000206929.1"; transcript_id "ENST00000384202.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.452-201"; exon_number 1; exon_id "ENSE00001807185.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206929.1"; orig_coord_info "chr12,101446825,101446932,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	104851824	104851918	.	+	.	gene_id "Y_RNA^ENSG00000222579.1"; transcript_id "ENST00000410647.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.608-201"; exon_number 1; exon_id "ENSE00001590465.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222579.1"; orig_coord_info "chr12,104851824,104851918,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	107650789	107650892	.	+	.	gene_id "Y_RNA^ENSG00000222160.1"; transcript_id "ENST00000410228.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.591-201"; exon_number 1; exon_id "ENSE00001590046.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222160.1"; orig_coord_info "chr12,107650789,107650892,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	108738484	108738604	.	+	.	gene_id "Y_RNA^ENSG00000200060.1"; transcript_id "ENST00000363190.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.107-201"; exon_number 1; exon_id "ENSE00001437953.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200060.1"; orig_coord_info "chr12,108738484,108738604,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	112069104	112069209	.	+	.	gene_id "Y_RNA^ENSG00000200688.1"; transcript_id "ENST00000363818.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.177-201"; exon_number 1; exon_id "ENSE00001438581.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200688.1"; orig_coord_info "chr12,112069104,112069209,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	112149360	112149472	.	+	.	gene_id "Y_RNA^ENSG00000200135.1"; transcript_id "ENST00000363265.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.114-201"; exon_number 1; exon_id "ENSE00001807122.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200135.1"; orig_coord_info "chr12,112149360,112149472,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	113156763	113156861	.	-	.	gene_id "Y_RNA^ENSG00000199899.2"; transcript_id "ENST00000363029.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.88-201"; exon_number 1; exon_id "ENSE00001437792.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199899.2"; orig_coord_info "chr12,113156763,113156861,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	113178423	113178519	.	-	.	gene_id "Y_RNA^ENSG00000201208.1"; transcript_id "ENST00000364338.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.227-201"; exon_number 1; exon_id "ENSE00001439101.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201208.1"; orig_coord_info "chr12,113178423,113178519,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	114657949	114658062	.	-	.	gene_id "Y_RNA^ENSG00000199220.1"; transcript_id "ENST00000362350.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.6-201"; exon_number 1; exon_id "ENSE00001437113.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199220.1"; orig_coord_info "chr12,114657949,114658062,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	120504571	120504659	.	-	.	gene_id "Y_RNA^ENSG00000222601.1"; transcript_id "ENST00000410669.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.609-201"; exon_number 1; exon_id "ENSE00001590487.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222601.1"; orig_coord_info "chr12,120504571,120504659,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	122768099	122768200	.	+	.	gene_id "Y_RNA^ENSG00000206914.1"; transcript_id "ENST00000384187.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.449-201"; exon_number 1; exon_id "ENSE00001808415.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206914.1"; orig_coord_info "chr12,122768099,122768200,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	123348999	123349100	.	-	.	gene_id "Y_RNA^ENSG00000207189.1"; transcript_id "ENST00000384460.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.498-201"; exon_number 1; exon_id "ENSE00001808209.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207189.1"; orig_coord_info "chr12,123348999,123349100,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	127619336	127619447	.	-	.	gene_id "Y_RNA^ENSG00000199584.1"; transcript_id "ENST00000362714.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.49-201"; exon_number 1; exon_id "ENSE00001808706.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199584.1"; orig_coord_info "chr12,127619336,127619447,-";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	130906838	130906949	.	+	.	gene_id "Y_RNA^ENSG00000206850.1"; transcript_id "ENST00000384123.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.441-201"; exon_number 1; exon_id "ENSE00001808315.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206850.1"; orig_coord_info "chr12,130906838,130906949,+";
Error, chr discrepancy in gtf info for chr12	ENSEMBL	exon	133238455	133238549	.	+	.	gene_id "Y_RNA^ENSG00000238443.1"; transcript_id "ENST00000459107.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.633-201"; exon_number 1; exon_id "ENSE00001808702.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238443.1"; orig_coord_info "chr12,133238455,133238549,+";
Error, chr discrepancy in gtf info for chr13	ENSEMBL	exon	28629794	28629883	.	+	.	gene_id "Y_RNA^ENSG00000273964.1"; transcript_id "ENST00000620203.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.778-201"; exon_number 1; exon_id "ENSE00003715841.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000273964.1"; orig_coord_info "chr13,28629794,28629883,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	20679411	20679512	.	+	.	gene_id "Y_RNA^ENSG00000199461.1"; transcript_id "ENST00000362591.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.33-201"; exon_number 1; exon_id "ENSE00001807998.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199461.1"; orig_coord_info "chr14,20679411,20679512,+";
Error, chr discrepancy in gtf info for chr14	HAVANA	exon	22852616	22852728	.	-	.	gene_id "Y_RNA^ENSG00000212335.1"; transcript_id "ENST00000391033.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.583-201"; exon_number 1; exon_id "ENSE00001808687.1"; level 2; transcript_support_level "NA"; tag "CAGE_supported_TSS"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212335.1"; orig_coord_info "chr14,22852616,22852728,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	22867818	22867917	.	+	.	gene_id "Y_RNA^ENSG00000199716.1"; transcript_id "ENST00000362846.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.65-201"; exon_number 1; exon_id "ENSE00001437609.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199716.1"; orig_coord_info "chr14,22867818,22867917,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	28901236	28901347	.	-	.	gene_id "Y_RNA^ENSG00000207164.1"; transcript_id "ENST00000384435.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.495-201"; exon_number 1; exon_id "ENSE00001808756.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207164.1"; orig_coord_info "chr14,28901236,28901347,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	31244761	31244861	.	+	.	gene_id "Y_RNA^ENSG00000202402.1"; transcript_id "ENST00000365532.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.364-201"; exon_number 1; exon_id "ENSE00001440295.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202402.1"; orig_coord_info "chr14,31244761,31244861,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	31258608	31258709	.	-	.	gene_id "Y_RNA^ENSG00000199291.1"; transcript_id "ENST00000362421.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.16-201"; exon_number 1; exon_id "ENSE00001806987.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199291.1"; orig_coord_info "chr14,31258608,31258709,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	38987281	38987383	.	+	.	gene_id "Y_RNA^ENSG00000199285.1"; transcript_id "ENST00000362415.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.14-201"; exon_number 1; exon_id "ENSE00001437178.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199285.1"; orig_coord_info "chr14,38987281,38987383,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	49592236	49592337	.	-	.	gene_id "Y_RNA^ENSG00000252919.1"; transcript_id "ENST00000517110.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.718-201"; exon_number 1; exon_id "ENSE00002089387.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252919.1"; orig_coord_info "chr14,49592236,49592337,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	49839401	49839493	.	-	.	gene_id "Y_RNA^ENSG00000277634.1"; transcript_id "ENST00000618281.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.811-201"; exon_number 1; exon_id "ENSE00003735073.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000277634.1"; orig_coord_info "chr14,49839401,49839493,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	50086982	50087083	.	+	.	gene_id "Y_RNA^ENSG00000251792.1"; transcript_id "ENST00000515983.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.657-201"; exon_number 1; exon_id "ENSE00002088260.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251792.1"; orig_coord_info "chr14,50086982,50087083,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	50468397	50468498	.	-	.	gene_id "Y_RNA^ENSG00000201573.1"; transcript_id "ENST00000364703.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.273-201"; exon_number 1; exon_id "ENSE00001439466.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201573.1"; orig_coord_info "chr14,50468397,50468498,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	51253933	51254023	.	-	.	gene_id "Y_RNA^ENSG00000201820.1"; transcript_id "ENST00000364950.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.297-201"; exon_number 1; exon_id "ENSE00001439713.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201820.1"; orig_coord_info "chr14,51253933,51254023,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	55651534	55651634	.	+	.	gene_id "Y_RNA^ENSG00000200742.1"; transcript_id "ENST00000363872.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.181-201"; exon_number 1; exon_id "ENSE00001808749.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200742.1"; orig_coord_info "chr14,55651534,55651634,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	58441844	58441992	.	+	.	gene_id "Y_RNA^ENSG00000252198.1"; transcript_id "ENST00000516389.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.675-201"; exon_number 1; exon_id "ENSE00002088666.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252198.1"; orig_coord_info "chr14,58441844,58441992,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	63621760	63621871	.	+	.	gene_id "Y_RNA^ENSG00000206822.1"; transcript_id "ENST00000384095.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.435-201"; exon_number 1; exon_id "ENSE00001809254.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206822.1"; orig_coord_info "chr14,63621760,63621871,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	63848261	63848362	.	-	.	gene_id "Y_RNA^ENSG00000202182.1"; transcript_id "ENST00000365312.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.337-201"; exon_number 1; exon_id "ENSE00001807832.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202182.1"; orig_coord_info "chr14,63848261,63848362,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	66177527	66177635	.	-	.	gene_id "Y_RNA^ENSG00000200860.1"; transcript_id "ENST00000363990.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.196-201"; exon_number 1; exon_id "ENSE00001438753.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200860.1"; orig_coord_info "chr14,66177527,66177635,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	67340068	67340176	.	+	.	gene_id "Y_RNA^ENSG00000199755.1"; transcript_id "ENST00000362885.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.69-201"; exon_number 1; exon_id "ENSE00001437648.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199755.1"; orig_coord_info "chr14,67340068,67340176,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	67617302	67617415	.	-	.	gene_id "Y_RNA^ENSG00000201529.1"; transcript_id "ENST00000364659.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.263-201"; exon_number 1; exon_id "ENSE00001439422.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201529.1"; orig_coord_info "chr14,67617302,67617415,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	69143852	69143953	.	-	.	gene_id "Y_RNA^ENSG00000206768.1"; transcript_id "ENST00000384041.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.419-201"; exon_number 1; exon_id "ENSE00001807702.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206768.1"; orig_coord_info "chr14,69143852,69143953,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	72022407	72022516	.	-	.	gene_id "Y_RNA^ENSG00000200298.1"; transcript_id "ENST00000363428.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.133-201"; exon_number 1; exon_id "ENSE00001438191.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200298.1"; orig_coord_info "chr14,72022407,72022516,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	72853224	72853331	.	-	.	gene_id "Y_RNA^ENSG00000206751.1"; transcript_id "ENST00000384024.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.417-201"; exon_number 1; exon_id "ENSE00001808876.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206751.1"; orig_coord_info "chr14,72853224,72853331,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	73858061	73858165	.	-	.	gene_id "Y_RNA^ENSG00000223300.1"; transcript_id "ENST00000411368.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.629-201"; exon_number 1; exon_id "ENSE00001591186.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223300.1"; orig_coord_info "chr14,73858061,73858165,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	73906316	73906427	.	-	.	gene_id "Y_RNA^ENSG00000199472.1"; transcript_id "ENST00000362602.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.36-201"; exon_number 1; exon_id "ENSE00001437365.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199472.1"; orig_coord_info "chr14,73906316,73906427,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	77821030	77821142	.	-	.	gene_id "Y_RNA^ENSG00000199440.1"; transcript_id "ENST00000362570.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.29-201"; exon_number 1; exon_id "ENSE00001806906.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199440.1"; orig_coord_info "chr14,77821030,77821142,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	88840165	88840263	.	+	.	gene_id "Y_RNA^ENSG00000207342.1"; transcript_id "ENST00000384612.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.535-201"; exon_number 1; exon_id "ENSE00001499620.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207342.1"; orig_coord_info "chr14,88840165,88840263,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	89650793	89650903	.	-	.	gene_id "Y_RNA^ENSG00000252655.1"; transcript_id "ENST00000516846.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.703-201"; exon_number 1; exon_id "ENSE00002089123.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252655.1"; orig_coord_info "chr14,89650793,89650903,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	90177222	90177330	.	+	.	gene_id "Y_RNA^ENSG00000201351.1"; transcript_id "ENST00000364481.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.243-201"; exon_number 1; exon_id "ENSE00001807843.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201351.1"; orig_coord_info "chr14,90177222,90177330,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	93397139	93397234	.	-	.	gene_id "Y_RNA^ENSG00000202306.1"; transcript_id "ENST00000365436.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.351-201"; exon_number 1; exon_id "ENSE00001807688.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202306.1"; orig_coord_info "chr14,93397139,93397234,-";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	99583017	99583118	.	+	.	gene_id "Y_RNA^ENSG00000200506.1"; transcript_id "ENST00000363636.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.156-201"; exon_number 1; exon_id "ENSE00001808197.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200506.1"; orig_coord_info "chr14,99583017,99583118,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	102695388	102695495	.	+	.	gene_id "Y_RNA^ENSG00000202459.1"; transcript_id "ENST00000365589.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.370-201"; exon_number 1; exon_id "ENSE00001440352.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202459.1"; orig_coord_info "chr14,102695388,102695495,+";
Error, chr discrepancy in gtf info for chr14	ENSEMBL	exon	103725728	103725825	.	-	.	gene_id "Y_RNA^ENSG00000253096.1"; transcript_id "ENST00000517287.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.723-201"; exon_number 1; exon_id "ENSE00002089564.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000253096.1"; orig_coord_info "chr14,103725728,103725825,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	30355436	30355540	.	+	.	gene_id "Y_RNA^ENSG00000238783.1"; transcript_id "ENST00000459414.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.641-201"; exon_number 1; exon_id "ENSE00001808340.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238783.1"; orig_coord_info "chr15,30355436,30355540,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	30673750	30673843	.	+	.	gene_id "Y_RNA^ENSG00000206846.1"; transcript_id "ENST00000384119.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.439-201"; exon_number 1; exon_id "ENSE00001807836.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206846.1"; orig_coord_info "chr15,30673750,30673843,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	32175247	32175351	.	-	.	gene_id "Y_RNA^ENSG00000201084.1"; transcript_id "ENST00000364214.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.217-201"; exon_number 1; exon_id "ENSE00001807665.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201084.1"; orig_coord_info "chr15,32175247,32175351,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	33722492	33722596	.	+	.	gene_id "Y_RNA^ENSG00000200008.1"; transcript_id "ENST00000363138.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.99-201"; exon_number 1; exon_id "ENSE00001437901.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200008.1"; orig_coord_info "chr15,33722492,33722596,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	34314728	34314828	.	+	.	gene_id "Y_RNA^ENSG00000207091.1"; transcript_id "ENST00000384363.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.479-201"; exon_number 1; exon_id "ENSE00001499372.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207091.1"; orig_coord_info "chr15,34314728,34314828,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	37050828	37050930	.	-	.	gene_id "Y_RNA^ENSG00000206676.1"; transcript_id "ENST00000383949.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.396-201"; exon_number 1; exon_id "ENSE00001498959.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206676.1"; orig_coord_info "chr15,37050828,37050930,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	39922782	39922886	.	-	.	gene_id "Y_RNA^ENSG00000200305.1"; transcript_id "ENST00000363435.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.134-201"; exon_number 1; exon_id "ENSE00001438198.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200305.1"; orig_coord_info "chr15,39922782,39922886,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	43247680	43247781	.	+	.	gene_id "Y_RNA^ENSG00000202211.1"; transcript_id "ENST00000365341.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.341-201"; exon_number 1; exon_id "ENSE00001806972.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202211.1"; orig_coord_info "chr15,43247680,43247781,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	43863893	43864005	.	-	.	gene_id "Y_RNA^ENSG00000200391.1"; transcript_id "ENST00000363521.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.144-201"; exon_number 1; exon_id "ENSE00001807864.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200391.1"; orig_coord_info "chr15,43863893,43864005,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	44697333	44697430	.	-	.	gene_id "Y_RNA^ENSG00000206957.2"; transcript_id "ENST00000384230.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.455-201"; exon_number 1; exon_id "ENSE00001808622.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206957.2"; orig_coord_info "chr15,44697333,44697430,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	44843612	44843724	.	+	.	gene_id "Y_RNA^ENSG00000238845.1"; transcript_id "ENST00000459006.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.644-201"; exon_number 1; exon_id "ENSE00001809046.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238845.1"; orig_coord_info "chr15,44843612,44843724,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	45047103	45047215	.	-	.	gene_id "Y_RNA^ENSG00000252171.1"; transcript_id "ENST00000516362.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.674-201"; exon_number 1; exon_id "ENSE00002088639.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252171.1"; orig_coord_info "chr15,45047103,45047215,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	45591984	45592085	.	+	.	gene_id "Y_RNA^ENSG00000200419.1"; transcript_id "ENST00000363549.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.146-201"; exon_number 1; exon_id "ENSE00001807827.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200419.1"; orig_coord_info "chr15,45591984,45592085,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	48325558	48325671	.	-	.	gene_id "Y_RNA^ENSG00000202542.1"; transcript_id "ENST00000365672.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.382-201"; exon_number 1; exon_id "ENSE00001440435.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202542.1"; orig_coord_info "chr15,48325558,48325671,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	48995912	48996022	.	-	.	gene_id "Y_RNA^ENSG00000207105.1"; transcript_id "ENST00000384377.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.482-201"; exon_number 1; exon_id "ENSE00001499386.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207105.1"; orig_coord_info "chr15,48995912,48996022,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	49137762	49137863	.	-	.	gene_id "Y_RNA^ENSG00000200120.1"; transcript_id "ENST00000363250.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.112-201"; exon_number 1; exon_id "ENSE00001807802.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200120.1"; orig_coord_info "chr15,49137762,49137863,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	50221888	50221996	.	+	.	gene_id "Y_RNA^ENSG00000200605.1"; transcript_id "ENST00000363735.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.167-201"; exon_number 1; exon_id "ENSE00001438498.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200605.1"; orig_coord_info "chr15,50221888,50221996,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	51884556	51884653	.	+	.	gene_id "Y_RNA^ENSG00000207484.1"; transcript_id "ENST00000384753.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.571-201"; exon_number 1; exon_id "ENSE00001809022.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207484.1"; orig_coord_info "chr15,51884556,51884653,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	52162751	52162852	.	+	.	gene_id "Y_RNA^ENSG00000206995.1"; transcript_id "ENST00000384268.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.462-201"; exon_number 1; exon_id "ENSE00001809217.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206995.1"; orig_coord_info "chr15,52162751,52162852,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	56634038	56634167	.	-	.	gene_id "Y_RNA^ENSG00000276696.1"; transcript_id "ENST00000614892.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.802-201"; exon_number 1; exon_id "ENSE00003728266.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000276696.1"; orig_coord_info "chr15,56634038,56634167,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	59408905	59409015	.	+	.	gene_id "Y_RNA^ENSG00000200252.1"; transcript_id "ENST00000363382.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.126-201"; exon_number 1; exon_id "ENSE00001438145.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200252.1"; orig_coord_info "chr15,59408905,59409015,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	64111458	64111569	.	-	.	gene_id "Y_RNA^ENSG00000201071.1"; transcript_id "ENST00000364201.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.214-201"; exon_number 1; exon_id "ENSE00001438964.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201071.1"; orig_coord_info "chr15,64111458,64111569,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	64445130	64445243	.	-	.	gene_id "Y_RNA^ENSG00000206781.1"; transcript_id "ENST00000384054.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.422-201"; exon_number 1; exon_id "ENSE00001806934.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206781.1"; orig_coord_info "chr15,64445130,64445243,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	64652888	64652989	.	+	.	gene_id "Y_RNA^ENSG00000207223.1"; transcript_id "ENST00000384494.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.506-201"; exon_number 1; exon_id "ENSE00001807849.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207223.1"; orig_coord_info "chr15,64652888,64652989,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	65502741	65502836	.	+	.	gene_id "Y_RNA^ENSG00000252217.1"; transcript_id "ENST00000516408.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.678-201"; exon_number 1; exon_id "ENSE00002088685.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252217.1"; orig_coord_info "chr15,65502741,65502836,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	66348276	66348375	.	+	.	gene_id "Y_RNA^ENSG00000223271.1"; transcript_id "ENST00000411339.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.628-201"; exon_number 1; exon_id "ENSE00001591157.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223271.1"; orig_coord_info "chr15,66348276,66348375,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	69406441	69406552	.	+	.	gene_id "Y_RNA^ENSG00000207395.1"; transcript_id "ENST00000384665.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.552-201"; exon_number 1; exon_id "ENSE00001807872.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207395.1"; orig_coord_info "chr15,69406441,69406552,+";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	74983274	74983376	.	-	.	gene_id "Y_RNA^ENSG00000199580.1"; transcript_id "ENST00000362710.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.48-201"; exon_number 1; exon_id "ENSE00001808100.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199580.1"; orig_coord_info "chr15,74983274,74983376,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	90977208	90977305	.	-	.	gene_id "Y_RNA^ENSG00000200142.1"; transcript_id "ENST00000363272.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.115-201"; exon_number 1; exon_id "ENSE00001438035.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200142.1"; orig_coord_info "chr15,90977208,90977305,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	99681786	99681877	.	-	.	gene_id "Y_RNA^ENSG00000201724.1"; transcript_id "ENST00000364854.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.288-201"; exon_number 1; exon_id "ENSE00001439617.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201724.1"; orig_coord_info "chr15,99681786,99681877,-";
Error, chr discrepancy in gtf info for chr15	ENSEMBL	exon	100638363	100638457	.	+	.	gene_id "Y_RNA^ENSG00000212306.1"; transcript_id "ENST00000391004.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.580-201"; exon_number 1; exon_id "ENSE00001508788.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212306.1"; orig_coord_info "chr15,100638363,100638457,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	178554	178656	.	+	.	gene_id "Y_RNA^ENSG00000207243.1"; transcript_id "ENST00000384514.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.511-201"; exon_number 1; exon_id "ENSE00001499522.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207243.1"; orig_coord_info "chr16,178554,178656,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	439297	439397	.	-	.	gene_id "Y_RNA^ENSG00000201034.1"; transcript_id "ENST00000364164.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.211-201"; exon_number 1; exon_id "ENSE00001438927.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201034.1"; orig_coord_info "chr16,439297,439397,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	2131851	2131950	.	+	.	gene_id "Y_RNA^ENSG00000200059.1"; transcript_id "ENST00000363189.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.106-201"; exon_number 1; exon_id "ENSE00001806884.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200059.1"; orig_coord_info "chr16,2131851,2131950,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	11315067	11315178	.	+	.	gene_id "Y_RNA^ENSG00000199668.1"; transcript_id "ENST00000362798.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.56-201"; exon_number 1; exon_id "ENSE00001807751.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199668.1"; orig_coord_info "chr16,11315067,11315178,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	14275508	14275600	.	+	.	gene_id "Y_RNA^ENSG00000201075.2"; transcript_id "ENST00000364205.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.216-201"; exon_number 1; exon_id "ENSE00001438968.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201075.2"; orig_coord_info "chr16,14275508,14275600,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	14915457	14915556	.	-	.	gene_id "Y_RNA^ENSG00000207425.1"; transcript_id "ENST00000384694.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.561-201"; exon_number 1; exon_id "ENSE00001807247.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207425.1"; orig_coord_info "chr16,14915457,14915556,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	15150697	15150796	.	+	.	gene_id "Y_RNA^ENSG00000207294.1"; transcript_id "ENST00000384564.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.524-201"; exon_number 1; exon_id "ENSE00001808327.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207294.1"; orig_coord_info "chr16,15150697,15150796,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	16314112	16314211	.	-	.	gene_id "Y_RNA^ENSG00000206706.1"; transcript_id "ENST00000383979.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.405-201"; exon_number 1; exon_id "ENSE00001807240.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206706.1"; orig_coord_info "chr16,16314112,16314211,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	18397937	18398036	.	+	.	gene_id "Y_RNA^ENSG00000206927.1"; transcript_id "ENST00000384200.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.451-201"; exon_number 1; exon_id "ENSE00001808888.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206927.1"; orig_coord_info "chr16,18397937,18398036,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	27722284	27722392	.	-	.	gene_id "Y_RNA^ENSG00000201371.1"; transcript_id "ENST00000364501.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.248-201"; exon_number 1; exon_id "ENSE00001439264.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201371.1"; orig_coord_info "chr16,27722284,27722392,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	30453997	30454097	.	-	.	gene_id "Y_RNA^ENSG00000202476.1"; transcript_id "ENST00000365606.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.374-201"; exon_number 1; exon_id "ENSE00001809070.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202476.1"; orig_coord_info "chr16,30453997,30454097,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	30471587	30471703	.	+	.	gene_id "Y_RNA^ENSG00000222701.1"; transcript_id "ENST00000410769.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.615-201"; exon_number 1; exon_id "ENSE00001590587.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222701.1"; orig_coord_info "chr16,30471587,30471703,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	47313027	47313121	.	-	.	gene_id "Y_RNA^ENSG00000222767.1"; transcript_id "ENST00000410835.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.616-201"; exon_number 1; exon_id "ENSE00001590653.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222767.1"; orig_coord_info "chr16,47313027,47313121,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	58083068	58083168	.	-	.	gene_id "Y_RNA^ENSG00000207173.1"; transcript_id "ENST00000384444.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.496-201"; exon_number 1; exon_id "ENSE00001808092.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207173.1"; orig_coord_info "chr16,58083068,58083168,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	66550457	66550567	.	+	.	gene_id "Y_RNA^ENSG00000275745.1"; transcript_id "ENST00000411222.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.793-201"; exon_number 1; exon_id "ENSE00001591040.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000275745.1"; orig_coord_info "chr16,66550457,66550567,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	68089449	68089543	.	-	.	gene_id "Y_RNA^ENSG00000201850.1"; transcript_id "ENST00000364980.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.300-201"; exon_number 1; exon_id "ENSE00001439743.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201850.1"; orig_coord_info "chr16,68089449,68089543,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	68474553	68474664	.	-	.	gene_id "Y_RNA^ENSG00000199263.1"; transcript_id "ENST00000362393.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.12-201"; exon_number 1; exon_id "ENSE00001809000.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199263.1"; orig_coord_info "chr16,68474553,68474664,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	68885576	68885677	.	-	.	gene_id "Y_RNA^ENSG00000199979.1"; transcript_id "ENST00000363109.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.98-201"; exon_number 1; exon_id "ENSE00001437872.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199979.1"; orig_coord_info "chr16,68885576,68885677,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	69191123	69191223	.	+	.	gene_id "Y_RNA^ENSG00000200164.1"; transcript_id "ENST00000363294.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.117-201"; exon_number 1; exon_id "ENSE00001438057.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200164.1"; orig_coord_info "chr16,69191123,69191223,+";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	74463888	74463988	.	-	.	gene_id "Y_RNA^ENSG00000207525.1"; transcript_id "ENST00000384794.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.577-201"; exon_number 1; exon_id "ENSE00001806915.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207525.1"; orig_coord_info "chr16,74463888,74463988,-";
Error, chr discrepancy in gtf info for chr16	ENSEMBL	exon	86275429	86275523	.	-	.	gene_id "Y_RNA^ENSG00000199949.2"; transcript_id "ENST00000363079.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.95-201"; exon_number 1; exon_id "ENSE00001437842.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199949.2"; orig_coord_info "chr16,86275429,86275523,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	4186326	4186424	.	+	.	gene_id "Y_RNA^ENSG00000251812.1"; transcript_id "ENST00000516003.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.661-201"; exon_number 1; exon_id "ENSE00002088280.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251812.1"; orig_coord_info "chr17,4186326,4186424,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	7266055	7266166	.	-	.	gene_id "Y_RNA^ENSG00000202251.1"; transcript_id "ENST00000365381.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.344-201"; exon_number 1; exon_id "ENSE00001440144.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202251.1"; orig_coord_info "chr17,7266055,7266166,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	7537096	7537196	.	-	.	gene_id "Y_RNA^ENSG00000201489.1"; transcript_id "ENST00000364619.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.259-201"; exon_number 1; exon_id "ENSE00001439382.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201489.1"; orig_coord_info "chr17,7537096,7537196,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	17460444	17460522	.	+	.	gene_id "Y_RNA^ENSG00000201741.1"; transcript_id "ENST00000364871.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.289-201"; exon_number 1; exon_id "ENSE00001439634.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201741.1"; orig_coord_info "chr17,17460444,17460522,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	19649494	19649587	.	-	.	gene_id "Y_RNA^ENSG00000275982.1"; transcript_id "ENST00000515977.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.797-201"; exon_number 1; exon_id "ENSE00002088254.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000275982.1"; orig_coord_info "chr17,19649494,19649587,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	28834722	28834822	.	+	.	gene_id "Y_RNA^ENSG00000238516.1"; transcript_id "ENST00000459041.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.635-201"; exon_number 1; exon_id "ENSE00001808455.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238516.1"; orig_coord_info "chr17,28834722,28834822,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	30344503	30344604	.	-	.	gene_id "Y_RNA^ENSG00000207132.1"; transcript_id "ENST00000384403.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.488-201"; exon_number 1; exon_id "ENSE00001808391.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207132.1"; orig_coord_info "chr17,30344503,30344604,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	32463374	32463482	.	-	.	gene_id "Y_RNA^ENSG00000202100.1"; transcript_id "ENST00000365230.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.330-201"; exon_number 1; exon_id "ENSE00001439993.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202100.1"; orig_coord_info "chr17,32463374,32463482,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	32830219	32830329	.	-	.	gene_id "Y_RNA^ENSG00000201178.1"; transcript_id "ENST00000364308.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.224-201"; exon_number 1; exon_id "ENSE00001808494.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201178.1"; orig_coord_info "chr17,32830219,32830329,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	36285312	36285413	.	+	.	gene_id "Y_RNA^ENSG00000265889.1"; transcript_id "ENST00000476024.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.754-201"; exon_number 1; exon_id "ENSE00002691600.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000265889.1"; orig_coord_info "chr17,36285312,36285413,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	38089399	38089500	.	+	.	gene_id "Y_RNA^ENSG00000275006.1"; transcript_id "ENST00000614282.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.790-201"; exon_number 1; exon_id "ENSE00003733366.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000275006.1"; orig_coord_info "chr17,38089399,38089500,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	38231043	38231144	.	-	.	gene_id "Y_RNA^ENSG00000274284.1"; transcript_id "ENST00000614695.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.782-201"; exon_number 1; exon_id "ENSE00003725470.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274284.1"; orig_coord_info "chr17,38231043,38231144,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	40391232	40391338	.	-	.	gene_id "Y_RNA^ENSG00000222881.1"; transcript_id "ENST00000410949.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.618-201"; exon_number 1; exon_id "ENSE00001590767.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222881.1"; orig_coord_info "chr17,40391232,40391338,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	45071442	45071543	.	+	.	gene_id "Y_RNA^ENSG00000200888.1"; transcript_id "ENST00000364018.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.200-201"; exon_number 1; exon_id "ENSE00001808666.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200888.1"; orig_coord_info "chr17,45071442,45071543,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	46215070	46215171	.	-	.	gene_id "Y_RNA^ENSG00000238723.1"; transcript_id "ENST00000458981.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.639-201"; exon_number 1; exon_id "ENSE00001808005.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238723.1"; orig_coord_info "chr17,46215070,46215171,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	47557413	47557514	.	+	.	gene_id "Y_RNA^ENSG00000206734.1"; transcript_id "ENST00000384007.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.413-201"; exon_number 1; exon_id "ENSE00001808416.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206734.1"; orig_coord_info "chr17,47557413,47557514,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	48479097	48479198	.	+	.	gene_id "Y_RNA^ENSG00000206805.1"; transcript_id "ENST00000384078.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.428-201"; exon_number 1; exon_id "ENSE00001809047.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206805.1"; orig_coord_info "chr17,48479097,48479198,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	49416744	49416850	.	-	.	gene_id "Y_RNA^ENSG00000207127.1"; transcript_id "ENST00000384398.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.486-201"; exon_number 1; exon_id "ENSE00001809112.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207127.1"; orig_coord_info "chr17,49416744,49416850,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	50386145	50386246	.	-	.	gene_id "Y_RNA^ENSG00000206824.1"; transcript_id "ENST00000384097.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.436-201"; exon_number 1; exon_id "ENSE00001808547.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206824.1"; orig_coord_info "chr17,50386145,50386246,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	50696644	50696760	.	+	.	gene_id "Y_RNA^ENSG00000201340.1"; transcript_id "ENST00000364470.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.241-201"; exon_number 1; exon_id "ENSE00001439233.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201340.1"; orig_coord_info "chr17,50696644,50696760,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	59260748	59260846	.	+	.	gene_id "Y_RNA^ENSG00000207235.1"; transcript_id "ENST00000384506.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.509-201"; exon_number 1; exon_id "ENSE00001499514.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207235.1"; orig_coord_info "chr17,59260748,59260846,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	60748940	60749046	.	-	.	gene_id "Y_RNA^ENSG00000252534.1"; transcript_id "ENST00000516725.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.696-201"; exon_number 1; exon_id "ENSE00002089002.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252534.1"; orig_coord_info "chr17,60748940,60749046,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	61874084	61874182	.	-	.	gene_id "Y_RNA^ENSG00000202361.1"; transcript_id "ENST00000365491.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.358-201"; exon_number 1; exon_id "ENSE00001440254.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202361.1"; orig_coord_info "chr17,61874084,61874182,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	62036833	62036945	.	+	.	gene_id "Y_RNA^ENSG00000200842.1"; transcript_id "ENST00000363972.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.191-201"; exon_number 1; exon_id "ENSE00001438735.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200842.1"; orig_coord_info "chr17,62036833,62036945,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	62122320	62122421	.	+	.	gene_id "Y_RNA^ENSG00000207123.1"; transcript_id "ENST00000384395.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.485-201"; exon_number 1; exon_id "ENSE00001808261.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207123.1"; orig_coord_info "chr17,62122320,62122421,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	62661621	62661725	.	-	.	gene_id "Y_RNA^ENSG00000207382.1"; transcript_id "ENST00000384652.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.545-201"; exon_number 1; exon_id "ENSE00001499660.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207382.1"; orig_coord_info "chr17,62661621,62661725,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	64390158	64390263	.	-	.	gene_id "Y_RNA^ENSG00000239823.2"; transcript_id "ENST00000497848.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.654-201"; exon_number 1; exon_id "ENSE00001917466.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000239823.2"; orig_coord_info "chr17,64390158,64390263,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	67408774	67408881	.	-	.	gene_id "Y_RNA^ENSG00000201547.1"; transcript_id "ENST00000364677.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.265-201"; exon_number 1; exon_id "ENSE00001439440.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201547.1"; orig_coord_info "chr17,67408774,67408881,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	69985986	69986094	.	+	.	gene_id "Y_RNA^ENSG00000199801.1"; transcript_id "ENST00000362931.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.76-201"; exon_number 1; exon_id "ENSE00001437694.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199801.1"; orig_coord_info "chr17,69985986,69986094,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	75089862	75089974	.	-	.	gene_id "Y_RNA^ENSG00000206713.1"; transcript_id "ENST00000383986.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.407-201"; exon_number 1; exon_id "ENSE00001809192.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206713.1"; orig_coord_info "chr17,75089862,75089974,-";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	75145670	75145762	.	+	.	gene_id "Y_RNA^ENSG00000252042.1"; transcript_id "ENST00000516233.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.668-201"; exon_number 1; exon_id "ENSE00002088510.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252042.1"; orig_coord_info "chr17,75145670,75145762,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	75431990	75432087	.	+	.	gene_id "Y_RNA^ENSG00000202332.1"; transcript_id "ENST00000365462.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.355-201"; exon_number 1; exon_id "ENSE00001808460.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202332.1"; orig_coord_info "chr17,75431990,75432087,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	76319376	76319473	.	+	.	gene_id "Y_RNA^ENSG00000251779.1"; transcript_id "ENST00000515970.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.656-201"; exon_number 1; exon_id "ENSE00002088247.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251779.1"; orig_coord_info "chr17,76319376,76319473,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	77442109	77442213	.	+	.	gene_id "Y_RNA^ENSG00000200651.1"; transcript_id "ENST00000363781.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.174-201"; exon_number 1; exon_id "ENSE00001438544.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200651.1"; orig_coord_info "chr17,77442109,77442213,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	81573490	81573602	.	+	.	gene_id "Y_RNA^ENSG00000207021.1"; transcript_id "ENST00000384294.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.466-201"; exon_number 1; exon_id "ENSE00001808426.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207021.1"; orig_coord_info "chr17,81573490,81573602,+";
Error, chr discrepancy in gtf info for chr17	ENSEMBL	exon	82417226	82417321	.	+	.	gene_id "Y_RNA^ENSG00000201239.1"; transcript_id "ENST00000364369.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.232-201"; exon_number 1; exon_id "ENSE00001439132.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201239.1"; orig_coord_info "chr17,82417226,82417321,+";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	2621090	2621201	.	+	.	gene_id "Y_RNA^ENSG00000202224.1"; transcript_id "ENST00000365354.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.343-201"; exon_number 1; exon_id "ENSE00001808283.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202224.1"; orig_coord_info "chr18,2621090,2621201,+";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	2778941	2779057	.	+	.	gene_id "Y_RNA^ENSG00000207034.1"; transcript_id "ENST00000384307.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.470-201"; exon_number 1; exon_id "ENSE00001499316.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207034.1"; orig_coord_info "chr18,2778941,2779057,+";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	8720034	8720132	.	-	.	gene_id "Y_RNA^ENSG00000252319.1"; transcript_id "ENST00000516510.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.684-201"; exon_number 1; exon_id "ENSE00002088787.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252319.1"; orig_coord_info "chr18,8720034,8720132,-";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	9249649	9249746	.	-	.	gene_id "Y_RNA^ENSG00000200883.1"; transcript_id "ENST00000364013.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.198-201"; exon_number 1; exon_id "ENSE00001438776.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200883.1"; orig_coord_info "chr18,9249649,9249746,-";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	9250110	9250211	.	+	.	gene_id "Y_RNA^ENSG00000207092.1"; transcript_id "ENST00000384364.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.480-201"; exon_number 1; exon_id "ENSE00001807772.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207092.1"; orig_coord_info "chr18,9250110,9250211,+";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	12760717	12760818	.	+	.	gene_id "Y_RNA^ENSG00000201466.1"; transcript_id "ENST00000364596.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.257-201"; exon_number 1; exon_id "ENSE00001806899.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201466.1"; orig_coord_info "chr18,12760717,12760818,+";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	21724119	21724229	.	+	.	gene_id "Y_RNA^ENSG00000200750.1"; transcript_id "ENST00000363880.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.182-201"; exon_number 1; exon_id "ENSE00001438643.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200750.1"; orig_coord_info "chr18,21724119,21724229,+";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	23024596	23024703	.	+	.	gene_id "Y_RNA^ENSG00000223023.1"; transcript_id "ENST00000411091.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.622-201"; exon_number 1; exon_id "ENSE00001590909.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223023.1"; orig_coord_info "chr18,23024596,23024703,+";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	23456371	23456467	.	+	.	gene_id "Y_RNA^ENSG00000199357.1"; transcript_id "ENST00000362487.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.21-201"; exon_number 1; exon_id "ENSE00001437250.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199357.1"; orig_coord_info "chr18,23456371,23456467,+";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	23582016	23582121	.	-	.	gene_id "Y_RNA^ENSG00000199366.1"; transcript_id "ENST00000362496.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.23-201"; exon_number 1; exon_id "ENSE00001437259.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199366.1"; orig_coord_info "chr18,23582016,23582121,-";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	24429505	24429609	.	+	.	gene_id "Y_RNA^ENSG00000199636.1"; transcript_id "ENST00000362766.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.54-201"; exon_number 1; exon_id "ENSE00001437529.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199636.1"; orig_coord_info "chr18,24429505,24429609,+";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	31382317	31382430	.	+	.	gene_id "Y_RNA^ENSG00000207240.1"; transcript_id "ENST00000384511.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.510-201"; exon_number 1; exon_id "ENSE00001806935.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207240.1"; orig_coord_info "chr18,31382317,31382430,+";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	32263135	32263234	.	-	.	gene_id "Y_RNA^ENSG00000222395.2"; transcript_id "ENST00000410463.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.597-201"; exon_number 1; exon_id "ENSE00001590281.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222395.2"; orig_coord_info "chr18,32263135,32263234,-";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	34001698	34001799	.	-	.	gene_id "Y_RNA^ENSG00000199204.1"; transcript_id "ENST00000362334.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.5-201"; exon_number 1; exon_id "ENSE00001808663.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199204.1"; orig_coord_info "chr18,34001698,34001799,-";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	49871555	49871666	.	-	.	gene_id "Y_RNA^ENSG00000201668.1"; transcript_id "ENST00000364798.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.283-201"; exon_number 1; exon_id "ENSE00001808485.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201668.1"; orig_coord_info "chr18,49871555,49871666,-";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	50959267	50959379	.	-	.	gene_id "Y_RNA^ENSG00000200752.1"; transcript_id "ENST00000363882.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.183-201"; exon_number 1; exon_id "ENSE00001807919.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200752.1"; orig_coord_info "chr18,50959267,50959379,-";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	56753226	56753326	.	-	.	gene_id "Y_RNA^ENSG00000206865.1"; transcript_id "ENST00000384138.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.444-201"; exon_number 1; exon_id "ENSE00001806939.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206865.1"; orig_coord_info "chr18,56753226,56753326,-";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	62330812	62330913	.	+	.	gene_id "Y_RNA^ENSG00000199867.1"; transcript_id "ENST00000362997.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.81-201"; exon_number 1; exon_id "ENSE00001808308.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199867.1"; orig_coord_info "chr18,62330812,62330913,+";
Error, chr discrepancy in gtf info for chr18	ENSEMBL	exon	78544095	78544188	.	-	.	gene_id "Y_RNA^ENSG00000201723.2"; transcript_id "ENST00000364853.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.287-201"; exon_number 1; exon_id "ENSE00001439616.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201723.2"; orig_coord_info "chr18,78544095,78544188,-";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	6572956	6573057	.	-	.	gene_id "Y_RNA^ENSG00000199223.1"; transcript_id "ENST00000362353.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.8-201"; exon_number 1; exon_id "ENSE00001807837.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199223.1"; orig_coord_info "chr19,6572956,6573057,-";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	11408772	11408880	.	+	.	gene_id "Y_RNA^ENSG00000202357.1"; transcript_id "ENST00000365487.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.357-201"; exon_number 1; exon_id "ENSE00001807264.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202357.1"; orig_coord_info "chr19,11408772,11408880,+";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	12088245	12088346	.	-	.	gene_id "Y_RNA^ENSG00000199444.1"; transcript_id "ENST00000362574.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.31-201"; exon_number 1; exon_id "ENSE00001807109.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199444.1"; orig_coord_info "chr19,12088245,12088346,-";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	36203347	36203459	.	-	.	gene_id "Y_RNA^ENSG00000200179.1"; transcript_id "ENST00000363309.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.121-201"; exon_number 1; exon_id "ENSE00001438072.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200179.1"; orig_coord_info "chr19,36203347,36203459,-";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	36858227	36858329	.	-	.	gene_id "Y_RNA^ENSG00000206669.1"; transcript_id "ENST00000383942.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.394-201"; exon_number 1; exon_id "ENSE00001498952.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206669.1"; orig_coord_info "chr19,36858227,36858329,-";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	38294544	38294636	.	+	.	gene_id "Y_RNA^ENSG00000200209.1"; transcript_id "ENST00000363339.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.124-201"; exon_number 1; exon_id "ENSE00001438102.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200209.1"; orig_coord_info "chr19,38294544,38294636,+";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	40339059	40339164	.	-	.	gene_id "Y_RNA^ENSG00000207281.1"; transcript_id "ENST00000384551.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.517-201"; exon_number 1; exon_id "ENSE00001499559.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207281.1"; orig_coord_info "chr19,40339059,40339164,-";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	40342329	40342441	.	+	.	gene_id "Y_RNA^ENSG00000206925.1"; transcript_id "ENST00000384198.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.450-201"; exon_number 1; exon_id "ENSE00001808798.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206925.1"; orig_coord_info "chr19,40342329,40342441,+";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	46736312	46736419	.	+	.	gene_id "Y_RNA^ENSG00000222614.1"; transcript_id "ENST00000410682.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.611-201"; exon_number 1; exon_id "ENSE00001590500.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222614.1"; orig_coord_info "chr19,46736312,46736419,+";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	49566672	49566772	.	+	.	gene_id "Y_RNA^ENSG00000207073.1"; transcript_id "ENST00000384345.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.475-201"; exon_number 1; exon_id "ENSE00001807230.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207073.1"; orig_coord_info "chr19,49566672,49566772,+";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	52259076	52259187	.	-	.	gene_id "Y_RNA^ENSG00000207265.1"; transcript_id "ENST00000384535.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.515-201"; exon_number 1; exon_id "ENSE00001808726.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207265.1"; orig_coord_info "chr19,52259076,52259187,-";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	56105416	56105510	.	+	.	gene_id "Y_RNA^ENSG00000223060.1"; transcript_id "ENST00000411128.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.623-201"; exon_number 1; exon_id "ENSE00001590946.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223060.1"; orig_coord_info "chr19,56105416,56105510,+";
Error, chr discrepancy in gtf info for chr19	ENSEMBL	exon	56316524	56316636	.	-	.	gene_id "Y_RNA^ENSG00000200646.1"; transcript_id "ENST00000363776.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.173-201"; exon_number 1; exon_id "ENSE00001808364.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200646.1"; orig_coord_info "chr19,56316524,56316636,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	450663	450762	.	+	.	gene_id "Y_RNA^ENSG00000206797.1"; transcript_id "ENST00000384070.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.427-201"; exon_number 1; exon_id "ENSE00001499080.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206797.1"; orig_coord_info "chr20,450663,450762,+";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	2453010	2453117	.	-	.	gene_id "Y_RNA^ENSG00000207305.1"; transcript_id "ENST00000384575.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.528-201"; exon_number 1; exon_id "ENSE00001807045.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207305.1"; orig_coord_info "chr20,2453010,2453117,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	5113993	5114083	.	-	.	gene_id "Y_RNA^ENSG00000252367.1"; transcript_id "ENST00000516558.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.687-201"; exon_number 1; exon_id "ENSE00002088835.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252367.1"; orig_coord_info "chr20,5113993,5114083,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	5964538	5964650	.	+	.	gene_id "Y_RNA^ENSG00000207380.1"; transcript_id "ENST00000384650.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.544-201"; exon_number 1; exon_id "ENSE00001808591.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207380.1"; orig_coord_info "chr20,5964538,5964650,+";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	16670641	16670742	.	-	.	gene_id "Y_RNA^ENSG00000200494.1"; transcript_id "ENST00000363624.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.154-201"; exon_number 1; exon_id "ENSE00001808463.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200494.1"; orig_coord_info "chr20,16670641,16670742,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	18113467	18113579	.	-	.	gene_id "Y_RNA^ENSG00000207282.1"; transcript_id "ENST00000384552.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.518-201"; exon_number 1; exon_id "ENSE00001807462.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207282.1"; orig_coord_info "chr20,18113467,18113579,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	23457584	23457685	.	-	.	gene_id "Y_RNA^ENSG00000200208.1"; transcript_id "ENST00000363338.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.123-201"; exon_number 1; exon_id "ENSE00001808273.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200208.1"; orig_coord_info "chr20,23457584,23457685,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	25214698	25214798	.	+	.	gene_id "Y_RNA^ENSG00000202414.1"; transcript_id "ENST00000365544.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.367-201"; exon_number 1; exon_id "ENSE00001440307.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202414.1"; orig_coord_info "chr20,25214698,25214798,+";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	29575060	29575171	.	+	.	gene_id "Y_RNA^ENSG00000283592.1"; transcript_id "ENST00000638104.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.827-201"; exon_number 1; exon_id "ENSE00003797269.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000283592.1"; orig_coord_info "chr20,29575060,29575171,+";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	30309015	30309126	.	-	.	gene_id "Y_RNA^ENSG00000200325.1"; transcript_id "ENST00000363455.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.137-201"; exon_number 1; exon_id "ENSE00001807551.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200325.1"; orig_coord_info "chr20,30309015,30309126,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	34384165	34384265	.	-	.	gene_id "Y_RNA^ENSG00000201498.1"; transcript_id "ENST00000364628.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.260-201"; exon_number 1; exon_id "ENSE00001439391.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201498.1"; orig_coord_info "chr20,34384165,34384265,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	34526510	34526606	.	-	.	gene_id "Y_RNA^ENSG00000206582.1"; transcript_id "ENST00000383855.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.383-201"; exon_number 1; exon_id "ENSE00001808736.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206582.1"; orig_coord_info "chr20,34526510,34526606,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	35853252	35853364	.	-	.	gene_id "Y_RNA^ENSG00000199676.1"; transcript_id "ENST00000362806.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.57-201"; exon_number 1; exon_id "ENSE00001437569.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199676.1"; orig_coord_info "chr20,35853252,35853364,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	36668559	36668670	.	-	.	gene_id "Y_RNA^ENSG00000202255.1"; transcript_id "ENST00000365385.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.346-201"; exon_number 1; exon_id "ENSE00001808305.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202255.1"; orig_coord_info "chr20,36668559,36668670,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	43451159	43451260	.	-	.	gene_id "Y_RNA^ENSG00000206998.1"; transcript_id "ENST00000384271.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.463-201"; exon_number 1; exon_id "ENSE00001809038.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206998.1"; orig_coord_info "chr20,43451159,43451260,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	44344839	44344933	.	+	.	gene_id "Y_RNA^ENSG00000201363.2"; transcript_id "ENST00000364493.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.245-201"; exon_number 1; exon_id "ENSE00001439256.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201363.2"; orig_coord_info "chr20,44344839,44344933,+";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	45004348	45004454	.	+	.	gene_id "Y_RNA^ENSG00000252021.1"; transcript_id "ENST00000516212.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.667-201"; exon_number 1; exon_id "ENSE00002088489.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252021.1"; orig_coord_info "chr20,45004348,45004454,+";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	49920597	49920694	.	-	.	gene_id "Y_RNA^ENSG00000199490.1"; transcript_id "ENST00000362620.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.39-201"; exon_number 1; exon_id "ENSE00001808834.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199490.1"; orig_coord_info "chr20,49920597,49920694,-";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	50563009	50563110	.	+	.	gene_id "Y_RNA^ENSG00000201501.1"; transcript_id "ENST00000364631.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.261-201"; exon_number 1; exon_id "ENSE00001807336.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201501.1"; orig_coord_info "chr20,50563009,50563110,+";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	53544615	53544725	.	+	.	gene_id "Y_RNA^ENSG00000206959.1"; transcript_id "ENST00000384232.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.456-201"; exon_number 1; exon_id "ENSE00001499241.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206959.1"; orig_coord_info "chr20,53544615,53544725,+";
Error, chr discrepancy in gtf info for chr20	ENSEMBL	exon	57311854	57311958	.	+	.	gene_id "Y_RNA^ENSG00000252064.1"; transcript_id "ENST00000516255.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.670-201"; exon_number 1; exon_id "ENSE00002088532.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252064.1"; orig_coord_info "chr20,57311854,57311958,+";
Error, chr discrepancy in gtf info for chr21	ENSEMBL	exon	5597390	5597490	.	+	.	gene_id "Y_RNA^ENSG00000277777.1"; transcript_id "ENST00000610788.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.812-201"; exon_number 1; exon_id "ENSE00003748388.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000277777.1"; orig_coord_info "chr21,5597390,5597490,+";
Error, chr discrepancy in gtf info for chr21	ENSEMBL	exon	6223480	6223580	.	-	.	gene_id "Y_RNA^ENSG00000274790.1"; transcript_id "ENST00000616522.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.787-201"; exon_number 1; exon_id "ENSE00003748067.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274790.1"; orig_coord_info "chr21,6223480,6223580,-";
Error, chr discrepancy in gtf info for chr21	ENSEMBL	exon	6365955	6366055	.	+	.	gene_id "Y_RNA^ENSG00000276902.1"; transcript_id "ENST00000615262.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.804-201"; exon_number 1; exon_id "ENSE00003749199.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000276902.1"; orig_coord_info "chr21,6365955,6366055,+";
Error, chr discrepancy in gtf info for chr21	ENSEMBL	exon	7092616	7092716	.	+	.	gene_id "Y_RNA^ENSG00000274046.1"; transcript_id "ENST00000617336.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.780-201"; exon_number 1; exon_id "ENSE00003722332.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274046.1"; orig_coord_info "chr21,7092616,7092716,+";
Error, chr discrepancy in gtf info for chr21	ENSEMBL	exon	7474394	7474494	.	+	.	gene_id "Y_RNA^ENSG00000274484.1"; transcript_id "ENST00000613803.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.784-201"; exon_number 1; exon_id "ENSE00003725839.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274484.1"; orig_coord_info "chr21,7474394,7474494,+";
Error, chr discrepancy in gtf info for chr21	ENSEMBL	exon	7663911	7664011	.	-	.	gene_id "Y_RNA^ENSG00000276546.1"; transcript_id "ENST00000619005.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.801-201"; exon_number 1; exon_id "ENSE00003732689.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000276546.1"; orig_coord_info "chr21,7663911,7664011,-";
Error, chr discrepancy in gtf info for chr21	ENSEMBL	exon	17527140	17527247	.	-	.	gene_id "Y_RNA^ENSG00000200754.1"; transcript_id "ENST00000363884.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.184-201"; exon_number 1; exon_id "ENSE00001808378.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200754.1"; orig_coord_info "chr21,17527140,17527247,-";
Error, chr discrepancy in gtf info for chr21	ENSEMBL	exon	17576798	17576906	.	+	.	gene_id "Y_RNA^ENSG00000199962.1"; transcript_id "ENST00000363092.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.96-201"; exon_number 1; exon_id "ENSE00001437855.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199962.1"; orig_coord_info "chr21,17576798,17576906,+";
Error, chr discrepancy in gtf info for chr21	ENSEMBL	exon	23432181	23432282	.	-	.	gene_id "Y_RNA^ENSG00000199698.1"; transcript_id "ENST00000362828.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.59-201"; exon_number 1; exon_id "ENSE00001807697.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199698.1"; orig_coord_info "chr21,23432181,23432282,-";
Error, chr discrepancy in gtf info for chr21	ENSEMBL	exon	29139283	29139384	.	-	.	gene_id "Y_RNA^ENSG00000201984.1"; transcript_id "ENST00000365114.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.314-201"; exon_number 1; exon_id "ENSE00001807733.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201984.1"; orig_coord_info "chr21,29139283,29139384,-";
Error, chr discrepancy in gtf info for chr21	ENSEMBL	exon	36986739	36986851	.	-	.	gene_id "Y_RNA^ENSG00000207416.1"; transcript_id "ENST00000384685.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.558-201"; exon_number 1; exon_id "ENSE00001499693.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207416.1"; orig_coord_info "chr21,36986739,36986851,-";
Error, chr discrepancy in gtf info for chr21	ENSEMBL	exon	39344537	39344628	.	+	.	gene_id "Y_RNA^ENSG00000252915.1"; transcript_id "ENST00000517106.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.717-201"; exon_number 1; exon_id "ENSE00002089383.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252915.1"; orig_coord_info "chr21,39344537,39344628,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	19045256	19045367	.	+	.	gene_id "Y_RNA^ENSG00000206739.1"; transcript_id "ENST00000384012.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.415-201"; exon_number 1; exon_id "ENSE00001808012.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206739.1"; orig_coord_info "chr22,19045256,19045367,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	20481158	20481268	.	+	.	gene_id "Y_RNA^ENSG00000201916.1"; transcript_id "ENST00000365046.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.309-201"; exon_number 1; exon_id "ENSE00001439809.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201916.1"; orig_coord_info "chr22,20481158,20481268,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	28303754	28303850	.	+	.	gene_id "Y_RNA^ENSG00000199797.1"; transcript_id "ENST00000362927.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.75-201"; exon_number 1; exon_id "ENSE00001437690.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199797.1"; orig_coord_info "chr22,28303754,28303850,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	29758758	29758859	.	+	.	gene_id "Y_RNA^ENSG00000200976.1"; transcript_id "ENST00000364106.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.203-201"; exon_number 1; exon_id "ENSE00001808918.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200976.1"; orig_coord_info "chr22,29758758,29758859,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	31230071	31230172	.	-	.	gene_id "Y_RNA^ENSG00000202019.1"; transcript_id "ENST00000365149.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.321-201"; exon_number 1; exon_id "ENSE00001807791.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202019.1"; orig_coord_info "chr22,31230071,31230172,-";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	36440880	36440970	.	-	.	gene_id "Y_RNA^ENSG00000252225.1"; transcript_id "ENST00000516416.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.679-201"; exon_number 1; exon_id "ENSE00002088693.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252225.1"; orig_coord_info "chr22,36440880,36440970,-";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	37013225	37013319	.	+	.	gene_id "Y_RNA^ENSG00000252412.1"; transcript_id "ENST00000516603.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.690-201"; exon_number 1; exon_id "ENSE00002088880.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252412.1"; orig_coord_info "chr22,37013225,37013319,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	41045497	41045591	.	+	.	gene_id "Y_RNA^ENSG00000222698.1"; transcript_id "ENST00000410766.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.614-201"; exon_number 1; exon_id "ENSE00001590584.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222698.1"; orig_coord_info "chr22,41045497,41045591,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	41065554	41065646	.	-	.	gene_id "Y_RNA^ENSG00000199515.1"; transcript_id "ENST00000362645.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.40-201"; exon_number 1; exon_id "ENSE00001808890.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199515.1"; orig_coord_info "chr22,41065554,41065646,-";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	41648089	41648190	.	-	.	gene_id "Y_RNA^ENSG00000200332.1"; transcript_id "ENST00000363462.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.138-201"; exon_number 1; exon_id "ENSE00001807933.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200332.1"; orig_coord_info "chr22,41648089,41648190,-";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	41747312	41747413	.	+	.	gene_id "Y_RNA^ENSG00000206813.1"; transcript_id "ENST00000384086.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.431-201"; exon_number 1; exon_id "ENSE00001808329.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206813.1"; orig_coord_info "chr22,41747312,41747413,+";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	42762860	42762959	.	-	.	gene_id "Y_RNA^ENSG00000200448.1"; transcript_id "ENST00000363578.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.152-201"; exon_number 1; exon_id "ENSE00001438341.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200448.1"; orig_coord_info "chr22,42762860,42762959,-";
Error, chr discrepancy in gtf info for chr22	ENSEMBL	exon	50669804	50669901	.	+	.	gene_id "Y_RNA^ENSG00000212569.1"; transcript_id "ENST00000391267.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.589-201"; exon_number 1; exon_id "ENSE00001809312.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212569.1"; orig_coord_info "chr22,50669804,50669901,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	3641443	3641555	.	-	.	gene_id "Y_RNA^ENSG00000207320.1"; transcript_id "ENST00000384590.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.532-201"; exon_number 1; exon_id "ENSE00001499598.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207320.1"; orig_coord_info "chrX,3641443,3641555,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	9874601	9874701	.	-	.	gene_id "Y_RNA^ENSG00000206844.1"; transcript_id "ENST00000384117.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.438-201"; exon_number 1; exon_id "ENSE00001807478.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206844.1"; orig_coord_info "chrX,9874601,9874701,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	10061222	10061323	.	+	.	gene_id "Y_RNA^ENSG00000202469.1"; transcript_id "ENST00000365599.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.372-201"; exon_number 1; exon_id "ENSE00001808371.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202469.1"; orig_coord_info "chrX,10061222,10061323,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	11116092	11116193	.	-	.	gene_id "Y_RNA^ENSG00000207151.1"; transcript_id "ENST00000384422.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.493-201"; exon_number 1; exon_id "ENSE00001807689.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207151.1"; orig_coord_info "chrX,11116092,11116193,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	12054824	12054926	.	-	.	gene_id "Y_RNA^ENSG00000206792.1"; transcript_id "ENST00000384065.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.425-201"; exon_number 1; exon_id "ENSE00001499075.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206792.1"; orig_coord_info "chrX,12054824,12054926,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	12149126	12149238	.	+	.	gene_id "Y_RNA^ENSG00000206795.1"; transcript_id "ENST00000384068.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.426-201"; exon_number 1; exon_id "ENSE00001807951.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206795.1"; orig_coord_info "chrX,12149126,12149238,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	16912215	16912317	.	-	.	gene_id "Y_RNA^ENSG00000199410.1"; transcript_id "ENST00000362540.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.27-201"; exon_number 1; exon_id "ENSE00001437303.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199410.1"; orig_coord_info "chrX,16912215,16912317,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	18395994	18396095	.	-	.	gene_id "Y_RNA^ENSG00000207025.1"; transcript_id "ENST00000384298.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.468-201"; exon_number 1; exon_id "ENSE00001808625.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207025.1"; orig_coord_info "chrX,18395994,18396095,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	19376774	19376875	.	+	.	gene_id "Y_RNA^ENSG00000202144.1"; transcript_id "ENST00000365274.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.333-201"; exon_number 1; exon_id "ENSE00001807007.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202144.1"; orig_coord_info "chrX,19376774,19376875,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	19985058	19985159	.	-	.	gene_id "Y_RNA^ENSG00000206663.1"; transcript_id "ENST00000383936.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.393-201"; exon_number 1; exon_id "ENSE00001807513.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206663.1"; orig_coord_info "chrX,19985058,19985159,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	21872707	21872808	.	+	.	gene_id "Y_RNA^ENSG00000206639.1"; transcript_id "ENST00000383912.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.385-201"; exon_number 1; exon_id "ENSE00001808631.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206639.1"; orig_coord_info "chrX,21872707,21872808,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	23782210	23782310	.	+	.	gene_id "Y_RNA^ENSG00000202272.1"; transcript_id "ENST00000365402.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.347-201"; exon_number 1; exon_id "ENSE00001440165.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202272.1"; orig_coord_info "chrX,23782210,23782310,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	27252119	27252235	.	-	.	gene_id "Y_RNA^ENSG00000252486.1"; transcript_id "ENST00000516677.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.694-201"; exon_number 1; exon_id "ENSE00002088954.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252486.1"; orig_coord_info "chrX,27252119,27252235,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	40492844	40492941	.	+	.	gene_id "Y_RNA^ENSG00000206677.2"; transcript_id "ENST00000383950.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.397-201"; exon_number 1; exon_id "ENSE00001498960.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206677.2"; orig_coord_info "chrX,40492844,40492941,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	41316488	41316589	.	+	.	gene_id "Y_RNA^ENSG00000238426.1"; transcript_id "ENST00000459189.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.632-201"; exon_number 1; exon_id "ENSE00001806871.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238426.1"; orig_coord_info "chrX,41316488,41316589,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	44401603	44401704	.	+	.	gene_id "Y_RNA^ENSG00000200702.1"; transcript_id "ENST00000363832.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.178-201"; exon_number 1; exon_id "ENSE00001807520.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200702.1"; orig_coord_info "chrX,44401603,44401704,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	50171197	50171297	.	-	.	gene_id "Y_RNA^ENSG00000202495.1"; transcript_id "ENST00000365625.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.375-201"; exon_number 1; exon_id "ENSE00001807500.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202495.1"; orig_coord_info "chrX,50171197,50171297,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	53324562	53324674	.	+	.	gene_id "Y_RNA^ENSG00000207408.1"; transcript_id "ENST00000384677.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.556-201"; exon_number 1; exon_id "ENSE00001807455.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207408.1"; orig_coord_info "chrX,53324562,53324674,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	55582733	55582834	.	+	.	gene_id "Y_RNA^ENSG00000200635.1"; transcript_id "ENST00000363765.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.172-201"; exon_number 1; exon_id "ENSE00001806983.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200635.1"; orig_coord_info "chrX,55582733,55582834,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	68361075	68361187	.	+	.	gene_id "Y_RNA^ENSG00000206646.1"; transcript_id "ENST00000383919.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.388-201"; exon_number 1; exon_id "ENSE00001807031.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206646.1"; orig_coord_info "chrX,68361075,68361187,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	71491066	71491167	.	-	.	gene_id "Y_RNA^ENSG00000199751.1"; transcript_id "ENST00000362881.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.68-201"; exon_number 1; exon_id "ENSE00001808000.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199751.1"; orig_coord_info "chrX,71491066,71491167,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	72284945	72285045	.	-	.	gene_id "Y_RNA^ENSG00000238926.1"; transcript_id "ENST00000410980.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.646-201"; exon_number 1; exon_id "ENSE00001808691.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238926.1"; orig_coord_info "chrX,72284945,72285045,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	86019608	86019715	.	+	.	gene_id "Y_RNA^ENSG00000199567.1"; transcript_id "ENST00000362697.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.47-201"; exon_number 1; exon_id "ENSE00001437460.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199567.1"; orig_coord_info "chrX,86019608,86019715,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	94178005	94178106	.	+	.	gene_id "Y_RNA^ENSG00000202410.1"; transcript_id "ENST00000365540.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.366-201"; exon_number 1; exon_id "ENSE00001806869.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202410.1"; orig_coord_info "chrX,94178005,94178106,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	96701507	96701619	.	-	.	gene_id "Y_RNA^ENSG00000207426.1"; transcript_id "ENST00000384695.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.562-201"; exon_number 1; exon_id "ENSE00001807328.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207426.1"; orig_coord_info "chrX,96701507,96701619,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	106426568	106426669	.	+	.	gene_id "Y_RNA^ENSG00000202407.1"; transcript_id "ENST00000365537.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.365-201"; exon_number 1; exon_id "ENSE00001806996.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202407.1"; orig_coord_info "chrX,106426568,106426669,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	107202577	107202683	.	+	.	gene_id "Y_RNA^ENSG00000199832.1"; transcript_id "ENST00000362962.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.77-201"; exon_number 1; exon_id "ENSE00001437725.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199832.1"; orig_coord_info "chrX,107202577,107202683,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	107901145	107901246	.	-	.	gene_id "Y_RNA^ENSG00000207363.1"; transcript_id "ENST00000384633.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.538-201"; exon_number 1; exon_id "ENSE00001807625.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207363.1"; orig_coord_info "chrX,107901145,107901246,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	108676951	108677057	.	-	.	gene_id "Y_RNA^ENSG00000207146.1"; transcript_id "ENST00000384417.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.491-201"; exon_number 1; exon_id "ENSE00001499425.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207146.1"; orig_coord_info "chrX,108676951,108677057,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	109744643	109744749	.	-	.	gene_id "Y_RNA^ENSG00000252069.1"; transcript_id "ENST00000516260.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.671-201"; exon_number 1; exon_id "ENSE00002088537.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252069.1"; orig_coord_info "chrX,109744643,109744749,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	112661657	112661768	.	+	.	gene_id "Y_RNA^ENSG00000200436.1"; transcript_id "ENST00000363566.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.151-201"; exon_number 1; exon_id "ENSE00001438329.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200436.1"; orig_coord_info "chrX,112661657,112661768,+";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	115139030	115139123	.	-	.	gene_id "Y_RNA^ENSG00000212241.1"; transcript_id "ENST00000390939.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.579-201"; exon_number 1; exon_id "ENSE00001508723.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212241.1"; orig_coord_info "chrX,115139030,115139123,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	117914244	117914345	.	-	.	gene_id "Y_RNA^ENSG00000200291.1"; transcript_id "ENST00000363421.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.132-201"; exon_number 1; exon_id "ENSE00001807696.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200291.1"; orig_coord_info "chrX,117914244,117914345,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	118569405	118569515	.	-	.	gene_id "Y_RNA^ENSG00000206862.1"; transcript_id "ENST00000384135.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.443-201"; exon_number 1; exon_id "ENSE00001808642.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206862.1"; orig_coord_info "chrX,118569405,118569515,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	123857062	123857163	.	-	.	gene_id "Y_RNA^ENSG00000199705.1"; transcript_id "ENST00000362835.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.61-201"; exon_number 1; exon_id "ENSE00001808561.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199705.1"; orig_coord_info "chrX,123857062,123857163,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	134142228	134142340	.	-	.	gene_id "Y_RNA^ENSG00000200572.1"; transcript_id "ENST00000363702.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.163-201"; exon_number 1; exon_id "ENSE00001807658.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200572.1"; orig_coord_info "chrX,134142228,134142340,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	136571705	136571815	.	-	.	gene_id "Y_RNA^ENSG00000199424.1"; transcript_id "ENST00000362554.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.28-201"; exon_number 1; exon_id "ENSE00001437317.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199424.1"; orig_coord_info "chrX,136571705,136571815,-";
Error, chr discrepancy in gtf info for chrX	ENSEMBL	exon	136816477	136816574	.	-	.	gene_id "Y_RNA^ENSG00000202279.1"; transcript_id "ENST00000365409.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.350-201"; exon_number 1; exon_id "ENSE00001440172.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202279.1"; orig_coord_info "chrX,136816477,136816574,-";
Error, chr discrepancy in gtf info for chrY	ENSEMBL	exon	7341531	7341642	.	+	.	gene_id "Y_RNA^ENSG00000251996.1"; transcript_id "ENST00000516187.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.666-201"; exon_number 1; exon_id "ENSE00002088464.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251996.1"; orig_coord_info "chrY,7341531,7341642,+";
Error - no gene spans 100M bases in length.... likely problem at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl line 589.
	main::get_gene_span_info("chr1\x{9}ENSEMBL\x{9}exon\x{9}7982881\x{9}7982983\x{9}.\x{9}-\x{9}.\x{9}gene_id \"Y_RNA^ENSG00"...) called at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl line 417
	main::get_gene_contig_gtf("chr1\x{9}ENSEMBL\x{9}exon\x{9}7982881\x{9}7982983\x{9}.\x{9}-\x{9}.\x{9}gene_id \"Y_RNA^ENSG00"..., "/tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir/ref_genome.fa") called at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl line 214
	eval {...} called at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl line 210

Done.
Execution Time = 0.12 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusionreport.tsv --gtf /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1 --shrink_introns --max_intron_length 1000 
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/fusion_contigs.ok
Running: cp /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/cp_contigs_file_workdir
Running: cp /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/cp_gtf_file_workdir.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf > /tmp/nxf.LNmEDgeWsd/cytoBand.txt
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf > /tmp/nxf.LNmEDgeWsd/cytoBand.txt
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/cytoband.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed
-parsing GTF file: /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/merged_contig_gtf_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed.sorted.bed
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed.bedsort.ok
Running: bgzip -f /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed.sorted.bed
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed.bgzip.ok
Running: tabix -p bed /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed.sorted.bed.gz
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bed.tabix.ok
Running: samtools faidx /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa
Execution Time = 0.00 minutes. CMD: samtools faidx /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/merged_contig_fai.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf --CPU 8 --out_prefix aih-tih-sc-2905df-R1_A23WJ53LT4_1.star --out_dir /tmp/nxf.LNmEDgeWsd/fi_workdir --reads "/tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1_1.fastp.fastq.gz /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1_2.fastp.fastq.gz"
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1_1.fastp.fastq.gz /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
Jun 08 10:11:17 ..... started STAR run
Jun 08 10:11:17 ..... loading genome
Jun 08 10:12:58 ... generating Suffix Array index
Jun 08 10:16:43 ... completed Suffix Array index
Jun 08 10:16:43 ..... processing annotations GTF
Jun 08 10:16:44 ..... inserting junctions into the genome indices
Jun 08 10:17:44 ..... started mapping
Jun 08 11:09:11 ..... finished mapping
Jun 08 11:09:13 ..... started sorting BAM
Jun 08 11:09:14 ..... finished successfully
* Running CMD: mv Aligned.sortedByCoord.out.bam aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.sortedByCoord.out.bam
Execution Time = 57.99 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf --CPU 8 --out_prefix aih-tih-sc-2905df-R1_A23WJ53LT4_1.star --out_dir /tmp/nxf.LNmEDgeWsd/fi_workdir --reads "/tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1_1.fastp.fastq.gz /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1_2.fastp.fastq.gz"
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/run_STAR.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py  -i /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.sortedByCoord.out.bam   -o /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam   --remove_dups 
11:09:25 : INFO : Done.
Execution Time = 0.16 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py  -i /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.sortedByCoord.out.bam   -o /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam   --remove_dups 
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/mark_dup_reads.ok
Running: samtools index /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam
Execution Time = 0.02 minutes. CMD: samtools index /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/mark_dups_reads.index.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
-parsing GTF file: /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf
-parsing /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam

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[1720000]   -done parsing /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 86,
          'seq-similar region overlap' => 199,
          'small anchor length' => 30,
          ' ** passed ** ' => 6219,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 4,
          'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 4,
          'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 16,
          'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 24,
          'excessive soft clipping' => 11120,
          'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 54,
          'num genes matched < 2' => 6,
          'exons hit < 2' => 2,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 4,
          'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 3,
          'low complexity anchor region' => 29,
          'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 4,
          'per_id < 96' => 4988,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 121,
          'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 4
        };
-writing fusion junction support info.
Execution Time = 0.93 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir   > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
-outputting the spanning read info: /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

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[7000]   -fusion SPANNING read extraction for scaff: ASCC1--DMBT1L1

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[28000]   -fusion SPANNING read extraction for scaff: CDKN2A--AC002378.1

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[38000]   -fusion SPANNING read extraction for scaff: FBXO7--RNU7-167P

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[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   -fusion SPANNING read extraction for scaff: GTPBP1--FAM230B

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[6000]   
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[8000]   
[9000]   
[10000]   -fusion SPANNING read extraction for scaff: HSCB--ZNRF3

[1000]   
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[3000]   
[4000]   -fusion SPANNING read extraction for scaff: KLRC4--KLRK1

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[163000]   
[164000]   -fusion SPANNING read extraction for scaff: LYPLAL1--SBF1

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[6000]   
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[8000]   
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[38000]   
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[40000]   
[41000]   
[42000]   
[43000]   
[44000]   -fusion SPANNING read extraction for scaff: MTAP--CNTN2

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[39000]   
[40000]   
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[43000]   
[44000]   
[45000]   -fusion SPANNING read extraction for scaff: NAV3--AC079362.1

[1000]   
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[6000]   
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[8000]   
[9000]   
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[68000]   
[69000]   
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[71000]   
[72000]   
[73000]   
[74000]   -fusion SPANNING read extraction for scaff: NOX4--AP003400.1

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[6000]   
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[8000]   
[9000]   
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[25000]   
[26000]   
[27000]   
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[29000]   
[30000]   
[31000]   -fusion SPANNING read extraction for scaff: PCDHA11--PCDHA13

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[8000]   
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[26000]   
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[30000]   
[31000]   
[32000]   -fusion SPANNING read extraction for scaff: PCDHA11--PCDHAC1

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[6000]   
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[8000]   
[9000]   
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[20000]   
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[25000]   
[26000]   -fusion SPANNING read extraction for scaff: PCDHA11--PCDHAC2

[1000]   
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[4000]   
[5000]   
[6000]   
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[8000]   
[9000]   
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[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC1

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[6000]   
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[8000]   
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[11000]   
[12000]   
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[17000]   
[18000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC2

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[6000]   
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[8000]   
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[18000]   
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[22000]   
[23000]   
[24000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHA13

[1000]   
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[6000]   
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[8000]   
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[100000]   
[101000]   
[102000]   -fusion SPANNING read extraction for scaff: PRR14L--RBBP5

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[8000]   
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[88000]   
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[90000]   
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[93000]   
[94000]   -fusion SPANNING read extraction for scaff: SLC24A5--SLC12A1

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[41000]   -fusion SPANNING read extraction for scaff: TLK2--AC240565.1

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[7000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

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[66000]   
[67000]   -fusion SPANNING read extraction for scaff: TRAF5--GGA1

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[80000]   
[81000]   -fusion SPANNING read extraction for scaff: TSPAN14--PLCE1

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[8000]   
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[14000]   
[15000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4

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[21000]   -fusion SPANNING read extraction for scaff: TXNRD2--AC021355.1

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[21000]   -fusion SPANNING read extraction for scaff: TXNRD2--GFRA2

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[152000]   
[153000]   -fusion SPANNING read extraction for scaff: ZMIZ1--LINC00595

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[152000]   -fusion SPANNING read extraction for scaff: ZMIZ1--AC012560.1
-filtered reads reasons: $VAR1 = {
          'lacks exon overlap' => 14118,
          'seq similar region alignment' => 28695
        };
Execution Time = 2.48 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir   > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1  > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1  > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/coalesce_junc_n_span.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj
EM: Starting log likelihood: -9513.863525
EM: Round [1] log likelihood: -9507.431427
EM: Round [2] log likelihood: -9507.167329
EM: Round [3] log likelihood: -9506.970694
EM: Round [4] log likelihood: -9506.790513
EM: Round [5] log likelihood: -9506.624776
EM: Round [6] log likelihood: -9506.471991
EM: Round [7] log likelihood: -9506.330860
EM: Round [8] log likelihood: -9506.200251
EM: Round [9] log likelihood: -9506.079172
EM: Round [10] log likelihood: -9505.966747
EM: Round [11] log likelihood: -9505.862202
EM: Round [12] log likelihood: -9505.764848
EM: Round [13] log likelihood: -9505.674075
EM: Round [14] log likelihood: -9505.589334
EM: Round [15] log likelihood: -9505.510133
EM: Round [16] log likelihood: -9505.436032
EM: Round [17] log likelihood: -9505.366632
EM: Round [18] log likelihood: -9505.301572
EM: Round [19] log likelihood: -9505.240527
EM: Round [20] log likelihood: -9505.183199
EM: Round [21] log likelihood: -9505.129319
EM: Round [22] log likelihood: -9505.078640
EM: Round [23] log likelihood: -9505.030937
EM: Round [24] log likelihood: -9504.986002
EM: Round [25] log likelihood: -9504.943647
EM: Round [26] log likelihood: -9504.903697
EM: Round [27] log likelihood: -9504.865992
EM: Round [28] log likelihood: -9504.830383
EM: Round [29] log likelihood: -9504.796734
EM: Round [30] log likelihood: -9504.764918
EM: Round [31] log likelihood: -9504.734819
EM: Round [32] log likelihood: -9504.706327
EM: Round [33] log likelihood: -9504.679341
EM: Round [34] log likelihood: -9504.653768
EM: Round [35] log likelihood: -9504.629521
EM: Round [36] log likelihood: -9504.606518
EM: Round [37] log likelihood: -9504.584684
EM: Round [38] log likelihood: -9504.563949
EM: Round [39] log likelihood: -9504.544245
EM: Round [40] log likelihood: -9504.525512
EM: Round [41] log likelihood: -9504.507692
EM: Round [42] log likelihood: -9504.490731
EM: Round [43] log likelihood: -9504.474579
EM: Round [44] log likelihood: -9504.459189
EM: Round [45] log likelihood: -9504.444516
EM: Round [46] log likelihood: -9504.430520
EM: Round [47] log likelihood: -9504.417160
EM: Round [48] log likelihood: -9504.404401
EM: Round [49] log likelihood: -9504.392208
EM: Round [50] log likelihood: -9504.380550
EM: Round [51] log likelihood: -9504.369396
EM: Round [52] log likelihood: -9504.358717
EM: Round [53] log likelihood: -9504.348488
EM: Round [54] log likelihood: -9504.338683
EM: Round [55] log likelihood: -9504.329278
EM: Round [56] log likelihood: -9504.320252
EM: Round [57] log likelihood: -9504.311583
EM: Round [58] log likelihood: -9504.303252
EM: Round [59] log likelihood: -9504.295241
EM: Round [60] log likelihood: -9504.287532
EM: Round [61] log likelihood: -9504.280109
EM: Round [62] log likelihood: -9504.272957
EM: Round [63] log likelihood: -9504.266061
EM: Round [64] log likelihood: -9504.259407
EM: Round [65] log likelihood: -9504.252982
EM: Round [66] log likelihood: -9504.246776
EM: Round [67] log likelihood: -9504.240775
EM: Round [68] log likelihood: -9504.234970
EM: Round [69] log likelihood: -9504.229350
EM: Round [70] log likelihood: -9504.223906
EM: Round [71] log likelihood: -9504.218629
EM: Round [72] log likelihood: -9504.213510
EM: Round [73] log likelihood: -9504.208542
EM: Round [74] log likelihood: -9504.203717
EM: Round [75] log likelihood: -9504.199027
EM: Round [76] log likelihood: -9504.194467
EM: Round [77] log likelihood: -9504.190029
EM: Round [78] log likelihood: -9504.185708
EM: Round [79] log likelihood: -9504.181499
EM: Round [80] log likelihood: -9504.177396
EM: Round [81] log likelihood: -9504.173394
EM: Round [82] log likelihood: -9504.169488
EM: Round [83] log likelihood: -9504.165674
EM: Round [84] log likelihood: -9504.161948
EM: Round [85] log likelihood: -9504.158305
EM: Round [86] log likelihood: -9504.154743
EM: Round [87] log likelihood: -9504.151257
EM: Round [88] log likelihood: -9504.147845
EM: Round [89] log likelihood: -9504.144502
EM: Round [90] log likelihood: -9504.141227
EM: Round [91] log likelihood: -9504.138016
EM: Round [92] log likelihood: -9504.134866
EM: Round [93] log likelihood: -9504.131776
EM: Round [94] log likelihood: -9504.128742
EM: Round [95] log likelihood: -9504.125763
EM: Round [96] log likelihood: -9504.122837
EM: Round [97] log likelihood: -9504.119960
EM: Round [98] log likelihood: -9504.117133
EM: Round [99] log likelihood: -9504.114352
EM: Round [100] log likelihood: -9504.111616
EM: Round [101] log likelihood: -9504.108923
EM: Round [102] log likelihood: -9504.106273
EM: Round [103] log likelihood: -9504.103663
EM: Round [104] log likelihood: -9504.101092
EM: Round [105] log likelihood: -9504.098558
EM: Round [106] log likelihood: -9504.096062
EM: Round [107] log likelihood: -9504.093601
EM: Round [108] log likelihood: -9504.091174
EM: Round [109] log likelihood: -9504.088780
EM: Round [110] log likelihood: -9504.086419
EM: Round [111] log likelihood: -9504.084088
EM: Round [112] log likelihood: -9504.081789
EM: Round [113] log likelihood: -9504.079518
EM: Round [114] log likelihood: -9504.077277
EM: Round [115] log likelihood: -9504.075063
EM: Round [116] log likelihood: -9504.072877
EM: Round [117] log likelihood: -9504.070717
EM: Round [118] log likelihood: -9504.068583
EM: Round [119] log likelihood: -9504.066474
EM: Round [120] log likelihood: -9504.064390
EM: Round [121] log likelihood: -9504.062330
EM: Round [122] log likelihood: -9504.060293
EM: Round [123] log likelihood: -9504.058279
EM: Round [124] log likelihood: -9504.056288
EM: Round [125] log likelihood: -9504.054318
EM: Round [126] log likelihood: -9504.052370
EM: Round [127] log likelihood: -9504.050443
EM: Round [128] log likelihood: -9504.048536
EM: Round [129] log likelihood: -9504.046650
EM: Round [130] log likelihood: -9504.044783
EM: Round [131] log likelihood: -9504.042936
EM: Round [132] log likelihood: -9504.041107
EM: Round [133] log likelihood: -9504.039298
EM: Round [134] log likelihood: -9504.037506
EM: Round [135] log likelihood: -9504.035733
EM: Round [136] log likelihood: -9504.033977
EM: Round [137] log likelihood: -9504.032239
EM: Round [138] log likelihood: -9504.030518
EM: Round [139] log likelihood: -9504.028813
EM: Round [140] log likelihood: -9504.027126
EM: Round [141] log likelihood: -9504.025454
EM: Round [142] log likelihood: -9504.023799
EM: Round [143] log likelihood: -9504.022159
EM: Round [144] log likelihood: -9504.020535
EM: Round [145] log likelihood: -9504.018926
EM: Round [146] log likelihood: -9504.017332
EM: Round [147] log likelihood: -9504.015753
EM: Round [148] log likelihood: -9504.014189
EM: Round [149] log likelihood: -9504.012640
EM: Round [150] log likelihood: -9504.011104
EM: Round [151] log likelihood: -9504.009583
EM: Round [152] log likelihood: -9504.008075
EM: Round [153] log likelihood: -9504.006581
EM: Round [154] log likelihood: -9504.005101
EM: Round [155] log likelihood: -9504.003634
EM: Round [156] log likelihood: -9504.002181
EM: Round [157] log likelihood: -9504.000740
EM: Round [158] log likelihood: -9503.999312
EM: Round [159] log likelihood: -9503.997897
EM: Round [160] log likelihood: -9503.996495
EM: Round [161] log likelihood: -9503.995104
EM: Round [162] log likelihood: -9503.993727
EM: Round [163] log likelihood: -9503.992361
EM: Round [164] log likelihood: -9503.991007
EM: Round [165] log likelihood: -9503.989665
EM: Round [166] log likelihood: -9503.988335
EM: Round [167] log likelihood: -9503.987016
EM: Round [168] log likelihood: -9503.985709
EM: Round [169] log likelihood: -9503.984413
EM: Round [170] log likelihood: -9503.983128
EM: Round [171] log likelihood: -9503.981854
EM: Round [172] log likelihood: -9503.980592
EM: Round [173] log likelihood: -9503.979340
EM: Round [174] log likelihood: -9503.978099
EM: Round [175] log likelihood: -9503.976868
EM: Round [176] log likelihood: -9503.975648
EM: Round [177] log likelihood: -9503.974438
EM: Round [178] log likelihood: -9503.973239
EM: Round [179] log likelihood: -9503.972049
EM: Round [180] log likelihood: -9503.970870
EM: Round [181] log likelihood: -9503.969701
EM: Round [182] log likelihood: -9503.968542
EM: Round [183] log likelihood: -9503.967392
EM: Round [184] log likelihood: -9503.966252
EM: Round [185] log likelihood: -9503.965122
EM: Round [186] log likelihood: -9503.964001
EM: Round [187] log likelihood: -9503.962889
EM: Round [188] log likelihood: -9503.961787
EM: Round [189] log likelihood: -9503.960694
EM: Round [190] log likelihood: -9503.959610
EM: Round [191] log likelihood: -9503.958535
EM: Round [192] log likelihood: -9503.957469
EM: Round [193] log likelihood: -9503.956411
EM: Round [194] log likelihood: -9503.955363
EM: Round [195] log likelihood: -9503.954323
EM: Round [196] log likelihood: -9503.953292
EM: Round [197] log likelihood: -9503.952269
EM: Round [198] log likelihood: -9503.951255
EM: Round [199] log likelihood: -9503.950249
EM: Round [200] log likelihood: -9503.949251
EM: Round [201] log likelihood: -9503.948262
EM: Round [202] log likelihood: -9503.947281
EM: Round [203] log likelihood: -9503.946307
EM: Round [204] log likelihood: -9503.945342
EM: Round [205] log likelihood: -9503.944384
EM: Round [206] log likelihood: -9503.943435
EM: Round [207] log likelihood: -9503.942493
EM: Round [208] log likelihood: -9503.941559
EM: Round [209] log likelihood: -9503.940632
EM: Round [210] log likelihood: -9503.939713
EM: Round [211] log likelihood: -9503.938801
EM: Round [212] log likelihood: -9503.937897
EM: Round [213] log likelihood: -9503.937000
EM: Round [214] log likelihood: -9503.936110
EM: Round [215] log likelihood: -9503.935228
EM: Round [216] log likelihood: -9503.934352
EM: Round [217] log likelihood: -9503.933484
EM: Round [218] log likelihood: -9503.932623
EM: Round [219] log likelihood: -9503.931768
EM: Round [220] log likelihood: -9503.930921
EM: Round [221] log likelihood: -9503.930080
EM: Round [222] log likelihood: -9503.929246
EM: Round [223] log likelihood: -9503.928419
EM: Round [224] log likelihood: -9503.927599
EM: Round [225] log likelihood: -9503.926785
EM: Round [226] log likelihood: -9503.925977
EM: Round [227] log likelihood: -9503.925176
EM: Round [228] log likelihood: -9503.924382
EM: Round [229] log likelihood: -9503.923593
EM: Round [230] log likelihood: -9503.922811
EM: Round [231] log likelihood: -9503.922035
EM: Round [232] log likelihood: -9503.921266
EM: Round [233] log likelihood: -9503.920502
EM: Round [234] log likelihood: -9503.919745
EM: Round [235] log likelihood: -9503.918994
EM: Round [236] log likelihood: -9503.918248
EM: Round [237] log likelihood: -9503.917509
EM: Round [238] log likelihood: -9503.916775
EM: Round [239] log likelihood: -9503.916047
EM: Round [240] log likelihood: -9503.915325
EM: Round [241] log likelihood: -9503.914609
EM: Round [242] log likelihood: -9503.913898
EM: Round [243] log likelihood: -9503.913193
EM: Round [244] log likelihood: -9503.912494
EM: Round [245] log likelihood: -9503.911800
EM: Round [246] log likelihood: -9503.911111
EM: Round [247] log likelihood: -9503.910428
EM: Round [248] log likelihood: -9503.909751
EM: Round [249] log likelihood: -9503.909078
EM: Round [250] log likelihood: -9503.908411
EM: Round [251] log likelihood: -9503.907749
EM: Round [252] log likelihood: -9503.907093
EM: Round [253] log likelihood: -9503.906441
EM: Round [254] log likelihood: -9503.905795
EM: Round [255] log likelihood: -9503.905153
EM: Round [256] log likelihood: -9503.904517
EM: Round [257] log likelihood: -9503.903886
EM: Round [258] log likelihood: -9503.903259
EM: Round [259] log likelihood: -9503.902638
EM: Round [260] log likelihood: -9503.902021
EM: Round [261] log likelihood: -9503.901409
EM: Round [262] log likelihood: -9503.900802
EM: Round [263] log likelihood: -9503.900200
EM: Round [264] log likelihood: -9503.899602
EM: Round [265] log likelihood: -9503.899009
EM: Round [266] log likelihood: -9503.898421
EM: Round [267] log likelihood: -9503.897837
EM: Round [268] log likelihood: -9503.897258
EM: Round [269] log likelihood: -9503.896683
EM: Round [270] log likelihood: -9503.896113
EM: Round [271] log likelihood: -9503.895547
EM: Round [272] log likelihood: -9503.894986
EM: Round [273] log likelihood: -9503.894428
EM: Round [274] log likelihood: -9503.893876
EM: Round [275] log likelihood: -9503.893327
EM: Round [276] log likelihood: -9503.892783
EM: Round [277] log likelihood: -9503.892243
EM: Round [278] log likelihood: -9503.891707
EM: Round [279] log likelihood: -9503.891175
EM: Round [280] log likelihood: -9503.890647
EM: Round [281] log likelihood: -9503.890124
EM: Round [282] log likelihood: -9503.889604
EM: Round [283] log likelihood: -9503.889089
EM: Round [284] log likelihood: -9503.888577
EM: Round [285] log likelihood: -9503.888069
EM: Round [286] log likelihood: -9503.887566
EM: Round [287] log likelihood: -9503.887066
EM: Round [288] log likelihood: -9503.886570
EM: Round [289] log likelihood: -9503.886078
EM: Round [290] log likelihood: -9503.885589
EM: Round [291] log likelihood: -9503.885105
EM: Round [292] log likelihood: -9503.884624
EM: Round [293] log likelihood: -9503.884146
EM: Round [294] log likelihood: -9503.883673
EM: Round [295] log likelihood: -9503.883203
EM: Round [296] log likelihood: -9503.882736
EM: Round [297] log likelihood: -9503.882274
EM: Round [298] log likelihood: -9503.881814
EM: Round [299] log likelihood: -9503.881359
EM: Round [300] log likelihood: -9503.880906
EM: Round [301] log likelihood: -9503.880458
EM: Round [302] log likelihood: -9503.880012
EM: Round [303] log likelihood: -9503.879570
EM: Round [304] log likelihood: -9503.879132
EM: Round [305] log likelihood: -9503.878696
EM: Round [306] log likelihood: -9503.878264
EM: Round [307] log likelihood: -9503.877836
EM: Round [308] log likelihood: -9503.877410
EM: Round [309] log likelihood: -9503.876988
EM: Round [310] log likelihood: -9503.876569
EM: Round [311] log likelihood: -9503.876153
EM: Round [312] log likelihood: -9503.875741
EM: Round [313] log likelihood: -9503.875331
EM: Round [314] log likelihood: -9503.874925
EM: Round [315] log likelihood: -9503.874522
EM: Round [316] log likelihood: -9503.874122
EM: Round [317] log likelihood: -9503.873725
EM: Round [318] log likelihood: -9503.873330
EM: Round [319] log likelihood: -9503.872939
EM: Round [320] log likelihood: -9503.872551
EM: Round [321] log likelihood: -9503.872166
EM: Round [322] log likelihood: -9503.871783
EM: Round [323] log likelihood: -9503.871404
EM: Round [324] log likelihood: -9503.871027
EM: Round [325] log likelihood: -9503.870654
EM: Round [326] log likelihood: -9503.870283
EM: Round [327] log likelihood: -9503.869915
EM: Round [328] log likelihood: -9503.869550
EM: Round [329] log likelihood: -9503.869187
EM: Round [330] log likelihood: -9503.868827
EM: Round [331] log likelihood: -9503.868470
EM: Round [332] log likelihood: -9503.868116
EM: Round [333] log likelihood: -9503.867764
EM: Round [334] log likelihood: -9503.867415
EM: Round [335] log likelihood: -9503.867069
EM: Round [336] log likelihood: -9503.866725
EM: Round [337] log likelihood: -9503.866384
EM: Round [338] log likelihood: -9503.866045
EM: Round [339] log likelihood: -9503.865709
EM: Round [340] log likelihood: -9503.865375
EM: Round [341] log likelihood: -9503.865044
EM: Round [342] log likelihood: -9503.864716
EM: Round [343] log likelihood: -9503.864389
EM: Round [344] log likelihood: -9503.864066
EM: Round [345] log likelihood: -9503.863745
EM: Round [346] log likelihood: -9503.863426
EM: Round [347] log likelihood: -9503.863109
EM: Round [348] log likelihood: -9503.862795
EM: Round [349] log likelihood: -9503.862484
EM: Round [350] log likelihood: -9503.862174
EM: Round [351] log likelihood: -9503.861867
EM: Round [352] log likelihood: -9503.861563
EM: Round [353] log likelihood: -9503.861260
EM: Round [354] log likelihood: -9503.860960
EM: Round [355] log likelihood: -9503.860662
EM: Round [356] log likelihood: -9503.860366
EM: Round [357] log likelihood: -9503.860073
EM: Round [358] log likelihood: -9503.859782
EM: Round [359] log likelihood: -9503.859492
EM: Round [360] log likelihood: -9503.859205
EM: Round [361] log likelihood: -9503.858921
EM: Round [362] log likelihood: -9503.858638
EM: Round [363] log likelihood: -9503.858357
EM: Round [364] log likelihood: -9503.858079
EM: Round [365] log likelihood: -9503.857803
EM: Round [366] log likelihood: -9503.857528
EM: Round [367] log likelihood: -9503.857256
EM: Round [368] log likelihood: -9503.856986
EM: Round [369] log likelihood: -9503.856718
EM: Round [370] log likelihood: -9503.856451
EM: Round [371] log likelihood: -9503.856187
EM: Round [372] log likelihood: -9503.855925
EM: Round [373] log likelihood: -9503.855665
EM: Round [374] log likelihood: -9503.855406
EM: Round [375] log likelihood: -9503.855150
EM: Round [376] log likelihood: -9503.854895
EM: Round [377] log likelihood: -9503.854643
EM: Round [378] log likelihood: -9503.854392
EM: Round [379] log likelihood: -9503.854143
EM: Round [380] log likelihood: -9503.853896
EM: Round [381] log likelihood: -9503.853651
EM: Round [382] log likelihood: -9503.853407
EM: Round [383] log likelihood: -9503.853166
EM: Round [384] log likelihood: -9503.852926
EM: Round [385] log likelihood: -9503.852688
EM: Round [386] log likelihood: -9503.852452
EM: Round [387] log likelihood: -9503.852217
EM: Round [388] log likelihood: -9503.851985
EM: Round [389] log likelihood: -9503.851754
EM: Round [390] log likelihood: -9503.851524
EM: Round [391] log likelihood: -9503.851297
EM: Round [392] log likelihood: -9503.851071
EM: Round [393] log likelihood: -9503.850847
EM: Round [394] log likelihood: -9503.850624
EM: Round [395] log likelihood: -9503.850403
EM: Round [396] log likelihood: -9503.850184
EM: Round [397] log likelihood: -9503.849966
EM: Round [398] log likelihood: -9503.849750
EM: Round [399] log likelihood: -9503.849536
EM: Round [400] log likelihood: -9503.849323
EM: Round [401] log likelihood: -9503.849112
EM: Round [402] log likelihood: -9503.848902
EM: Round [403] log likelihood: -9503.848694
EM: Round [404] log likelihood: -9503.848487
EM: Round [405] log likelihood: -9503.848282
EM: Round [406] log likelihood: -9503.848079
EM: Round [407] log likelihood: -9503.847877
EM: Round [408] log likelihood: -9503.847676
EM: Round [409] log likelihood: -9503.847477
EM: Round [410] log likelihood: -9503.847279
EM: Round [411] log likelihood: -9503.847083
EM: Round [412] log likelihood: -9503.846889
EM: Round [413] log likelihood: -9503.846695
EM: Round [414] log likelihood: -9503.846503
EM: Round [415] log likelihood: -9503.846313
EM: Round [416] log likelihood: -9503.846124
EM: Round [417] log likelihood: -9503.845936
EM: Round [418] log likelihood: -9503.845750
EM: Round [419] log likelihood: -9503.845565
EM: Round [420] log likelihood: -9503.845382
EM: Round [421] log likelihood: -9503.845200
EM: Round [422] log likelihood: -9503.845019
EM: Round [423] log likelihood: -9503.844839
EM: Round [424] log likelihood: -9503.844661
EM: Round [425] log likelihood: -9503.844484
EM: Round [426] log likelihood: -9503.844309
EM: Round [427] log likelihood: -9503.844135
EM: Round [428] log likelihood: -9503.843962
EM: Round [429] log likelihood: -9503.843790
EM: Round [430] log likelihood: -9503.843620
EM: Round [431] log likelihood: -9503.843450
EM: Round [432] log likelihood: -9503.843283
EM: Round [433] log likelihood: -9503.843116
EM: Round [434] log likelihood: -9503.842950
EM: Round [435] log likelihood: -9503.842786
EM: Round [436] log likelihood: -9503.842623
EM: Round [437] log likelihood: -9503.842461
EM: Round [438] log likelihood: -9503.842301
EM: Round [439] log likelihood: -9503.842141
EM: Round [440] log likelihood: -9503.841983
EM: Round [441] log likelihood: -9503.841826
EM: Round [442] log likelihood: -9503.841670
EM: Round [443] log likelihood: -9503.841515
EM: Round [444] log likelihood: -9503.841361
EM: Round [445] log likelihood: -9503.841209
EM: Round [446] log likelihood: -9503.841057
EM: Round [447] log likelihood: -9503.840907
EM: Round [448] log likelihood: -9503.840758
EM: Round [449] log likelihood: -9503.840610
EM: Round [450] log likelihood: -9503.840463
EM: Round [451] log likelihood: -9503.840317
EM: Round [452] log likelihood: -9503.840172
EM: Round [453] log likelihood: -9503.840028
EM: Round [454] log likelihood: -9503.839885
EM: Round [455] log likelihood: -9503.839744
EM: Round [456] log likelihood: -9503.839603
EM: Round [457] log likelihood: -9503.839463
EM: Round [458] log likelihood: -9503.839325
EM: Round [459] log likelihood: -9503.839187
EM: Round [460] log likelihood: -9503.839051
EM: Round [461] log likelihood: -9503.838915
EM: Round [462] log likelihood: -9503.838780
EM: Round [463] log likelihood: -9503.838647
EM: Round [464] log likelihood: -9503.838514
EM: Round [465] log likelihood: -9503.838382
EM: Round [466] log likelihood: -9503.838252
EM: Round [467] log likelihood: -9503.838122
EM: Round [468] log likelihood: -9503.837993
EM: Round [469] log likelihood: -9503.837865
EM: Round [470] log likelihood: -9503.837738
EM: Round [471] log likelihood: -9503.837612
EM: Round [472] log likelihood: -9503.837487
EM: Round [473] log likelihood: -9503.837363
EM: Round [474] log likelihood: -9503.837240
EM: Round [475] log likelihood: -9503.837118
EM: Round [476] log likelihood: -9503.836996
EM: Round [477] log likelihood: -9503.836876
EM: Round [478] log likelihood: -9503.836756
EM: Round [479] log likelihood: -9503.836637
EM: Round [480] log likelihood: -9503.836519
EM: Round [481] log likelihood: -9503.836402
EM: Round [482] log likelihood: -9503.836286
EM: Round [483] log likelihood: -9503.836171
EM: Round [484] log likelihood: -9503.836056
EM: Round [485] log likelihood: -9503.835942
EM: Round [486] log likelihood: -9503.835830
EM: Round [487] log likelihood: -9503.835718
EM: Round [488] log likelihood: -9503.835606
EM: Round [489] log likelihood: -9503.835496
EM: Round [490] log likelihood: -9503.835386
EM: Round [491] log likelihood: -9503.835278
EM: Round [492] log likelihood: -9503.835170
EM: Round [493] log likelihood: -9503.835062
EM: Round [494] log likelihood: -9503.834956
EM: Round [495] log likelihood: -9503.834850
EM: Round [496] log likelihood: -9503.834745
EM: Round [497] log likelihood: -9503.834641
EM: Round [498] log likelihood: -9503.834538
EM: Round [499] log likelihood: -9503.834435
EM: Round [500] log likelihood: -9503.834334
EM: Round [501] log likelihood: -9503.834232
EM: Round [502] log likelihood: -9503.834132
EM: Round [503] log likelihood: -9503.834032
EM: Stopping iterations at round 503 due to insufficient improvement in likelihood.
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/init_EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/filter_by_frag_threshs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads  > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads  > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/prep_igv_extract_junc_reads.ok
Running: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam"
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
Execution Time = 0.00 minutes. CMD: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam"
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/prep_igv_junc_reads_bam.ok
Running: samtools index /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/samtools_idx_junc_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bed
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bed > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bed > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_reads.bam.tabix.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags  > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags  > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/span_reads_acc.ok
Running: samtools view -H /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools view -H /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/init_spanning_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam || : 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam || : 
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/prep_spanning_reads.ok
Running: samtools index /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/samtools_index_span_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bed
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bed > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bed > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.spanning_reads.bam.tabix.ok
Running: cp /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/cp_consol_bam.ok
Running: samtools index /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam
Execution Time = 0.02 minutes. CMD: samtools index /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/index_consol_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam --max_insert_size 10000000 
-extracting read coordinates from /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam into /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam.read_coords

CMD: touch /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam.read_coords > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam.frag_coords > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam.frag_coords.coord_sorted
Execution Time = 0.44 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam --max_insert_size 10000000 
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/prep_igv_sam_frag_coordss.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam.frag_coords > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.FusionJuncSpan
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.consolidated.bam.frag_coords > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.FusionJuncSpan
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/prep_igv_juncspan_fmt.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.Pfam.gff3 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.Pfam.gff3 
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/prep_igv_pfam_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.Pfam.gff3 > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.Pfam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.Pfam.gff3 > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.Pfam.bed
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/prep_igv_pfam_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.seqsimilar.gff3 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.seqsimilar.gff3 
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/prep_igv_seqsim_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.seqsimilar.gff3 > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.seqsimilar.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.seqsimilar.gff3 > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.igv.seqsimilar.bed
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/prep_igv_seqsim_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa > /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/add_splice_info.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl  --fusion_preds /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl  --fusion_preds /tmp/nxf.LNmEDgeWsd/fi_workdir/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/blast_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl  --fusions /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir
-done, see /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl  --fusions /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/annot_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
EM: Starting log likelihood: -8282.702411
EM: Round [1] log likelihood: -8282.148305
EM: Round [2] log likelihood: -8282.146876
EM: Round [3] log likelihood: -8282.146861
EM: Stopping iterations at round 3 due to insufficient improvement in likelihood.
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1_1.fastp.fastq.gz /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
-total frags in /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1_1.fastp.fastq.gz: 296860439
Execution Time = 5.90 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1_1.fastp.fastq.gz /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/add_FFPM.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa --gtf /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf  > /tmp/nxf.LNmEDgeWsd/fi_workdir/microH.dat
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fa --gtf /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gtf  > /tmp/nxf.LNmEDgeWsd/fi_workdir/microH.dat
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/microH.dat.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.LNmEDgeWsd/fi_workdir/microH.dat /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM  >  /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.LNmEDgeWsd/fi_workdir/microH.dat /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM  >  /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/append_microH_info.ok
Running: cp /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.tsv
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.tsv
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/cp_final.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads  > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads  > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/final.abridged.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.LNmEDgeWsd --json_outfile /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_inspector_web.json --file_prefix aih-tih-sc-2905df-R1_A23WJ53LT4_1
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.LNmEDgeWsd --json_outfile /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_inspector_web.json --file_prefix aih-tih-sc-2905df-R1_A23WJ53LT4_1
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/create_fi_igvjs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_inspector_web.json --input_file_prefix aih-tih-sc-2905df-R1_A23WJ53LT4_1 --html_output /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_inspector_web.html
Warning - not locating file: /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.gmap_trinity_GG.fusions.gff3.bed
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_inspector_web.json --input_file_prefix aih-tih-sc-2905df-R1_A23WJ53LT4_1 --html_output /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fusion_inspector_web.html
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/fusion_reports_html.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv  --genome_lib_dir /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv.annotated 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv  --genome_lib_dir /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv.annotated 
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/fusion_annotator.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv.annotated  --genome_lib_dir /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect 
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000230417.12]
WARNING, no entry stored in dbm for [ENSG00000230417.12]
WARNING, no entry stored in dbm for [ENSG00000230417.12]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000215498.9]
WARNING, no entry stored in dbm for [ENSG00000215498.9]
WARNING, no entry stored in dbm for [ENSG00000215498.9]
WARNING, no entry stored in dbm for [ENSG00000277702.1]
WARNING, no entry stored in dbm for [ENSG00000277146.1]
WARNING, no entry stored in dbm for [ENSG00000282863.1]
WARNING, no entry stored in dbm for [ENSG00000282863.1]
WARNING, no entry stored in dbm for [ENSG00000257165.5]
WARNING, no entry stored in dbm for [ENSG00000257165.5]
WARNING, no entry stored in dbm for [ENSG00000255429.1]
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv.annotated  --genome_lib_dir /tmp/nxf.LNmEDgeWsd/ctat_genome_lib_build_dir > /tmp/nxf.LNmEDgeWsd/aih-tih-sc-2905df-R1_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect 
Running: touch /tmp/nxf.LNmEDgeWsd/chckpts_dir/fusion_coding_region_effect.ok
ls: cannot access 'IGV_inputs': No such file or directory