File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/83c88dabe76f05e3cde706b5548b53/.command.out
Size
1.7 KB
Attempt
  AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 133
  Pass (FILTER=PASS): 13 (9.8%)
  Fail (FILTER=FAIL): 120 (90.2%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 3
  All 3 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 28
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 24
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 15
  confidence_below_min(medium<high): 12
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 3
  confidence_below_min(medium<high);aih_curated_blacklist: 3
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 3
  total_reads_below_min(5.0<8.0): 2
  total_reads_below_min(3.0<8.0): 2
  confidence_below_min(low<high): 2

Breakdown by confidence:
  high: 13 pass, 6 fail (total: 19)
  low: 0 pass, 34 fail (total: 34)
  medium: 0 pass, 80 fail (total: 80)
Arriba filter: 133 rows -> 13 PASS; wrote aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.arriba.fusions.filter_summary.txt