Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/4a6e053f9d37dd36ca8c1919421ed9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/4a6e053f9d37dd36ca8c1919421ed9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/eb1b4bc33e6f99dbd09d96c103560c/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/e87537765025c6c20022ca0a8a658b/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 237820156
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-19e09e-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	237820156
Known Splicing Events:	235567377
Partial Novel Splicing Events:	1251513
Novel Splicing Events:	899472
Filtered Splicing Events:	101794

Total splicing  Junctions:	394902
Known Splicing Junctions:	232533
Partial Novel Splicing Junctions:	83476
Novel Splicing Junctions:	78893

===================================================================
Create BED file ...
Create Interact file ...