Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/c5c6ec3b4ced32b6e2232ad2d8c614/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5bc4f9456ed625caf8f447632f219d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5bc4f9456ed625caf8f447632f219d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/42e04b256f6f076c16c4d3442e2c10/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2ca847-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (8392407) splicing reads. 215825 splicing junctions. 172071 known splicing junctions. 43754 novel splicing junctions.
sampling 10% (16784814) splicing reads. 251289 splicing junctions. 183365 known splicing junctions. 67924 novel splicing junctions.
sampling 15% (25177221) splicing reads. 273705 splicing junctions. 189057 known splicing junctions. 84648 novel splicing junctions.
sampling 20% (33569629) splicing reads. 289750 splicing junctions. 192710 known splicing junctions. 97040 novel splicing junctions.
sampling 25% (41962036) splicing reads. 301599 splicing junctions. 195094 known splicing junctions. 106505 novel splicing junctions.
sampling 30% (50354443) splicing reads. 310819 splicing junctions. 196848 known splicing junctions. 113971 novel splicing junctions.
sampling 35% (58746851) splicing reads. 318303 splicing junctions. 198222 known splicing junctions. 120081 novel splicing junctions.
sampling 40% (67139258) splicing reads. 324503 splicing junctions. 199317 known splicing junctions. 125186 novel splicing junctions.
sampling 45% (75531665) splicing reads. 329440 splicing junctions. 200136 known splicing junctions. 129304 novel splicing junctions.
sampling 50% (83924073) splicing reads. 333539 splicing junctions. 200762 known splicing junctions. 132777 novel splicing junctions.
sampling 55% (92316480) splicing reads. 337160 splicing junctions. 201325 known splicing junctions. 135835 novel splicing junctions.
sampling 60% (100708887) splicing reads. 340061 splicing junctions. 201796 known splicing junctions. 138265 novel splicing junctions.
sampling 65% (109101294) splicing reads. 342586 splicing junctions. 202154 known splicing junctions. 140432 novel splicing junctions.
sampling 70% (117493702) splicing reads. 344748 splicing junctions. 202522 known splicing junctions. 142226 novel splicing junctions.
sampling 75% (125886109) splicing reads. 346464 splicing junctions. 202806 known splicing junctions. 143658 novel splicing junctions.
sampling 80% (134278516) splicing reads. 347951 splicing junctions. 203029 known splicing junctions. 144922 novel splicing junctions.
sampling 85% (142670924) splicing reads. 349112 splicing junctions. 203216 known splicing junctions. 145896 novel splicing junctions.
sampling 90% (151063331) splicing reads. 350045 splicing junctions. 203359 known splicing junctions. 146686 novel splicing junctions.
sampling 95% (159455738) splicing reads. 350784 splicing junctions. 203483 known splicing junctions. 147301 novel splicing junctions.
sampling 100% (167848146) splicing reads. 351285 splicing junctions. 203553 known splicing junctions. 147732 novel splicing junctions.
null device 
          1