File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/0e93e00890fbcce73129d21f2822a4/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 7 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 221
  Pass (FILTER=PASS): 22 (10.0%)
  Fail (FILTER=FAIL): 199 (90.0%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 7
  All 7 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 37
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 23
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 18
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 17
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 16
  confidence_below_min(low<high): 16
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 15
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 13
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 9
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 7
  total_reads_below_min(4.0<8.0): 5
  total_reads_below_min(7.0<8.0): 3
  confidence_below_min(medium<high);aih_curated_blacklist: 3
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 3
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 3

Breakdown by confidence:
  high: 22 pass, 10 fail (total: 32)
  low: 0 pass, 78 fail (total: 78)
  medium: 0 pass, 111 fail (total: 111)
Arriba filter: 221 rows -> 22 PASS; wrote aih-tih-sc-6ff823-R1_A23WJ53LT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-6ff823-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-6ff823-R1_A23WJ53LT4_1.arriba.fusions.filter_summary.txt