File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/02ba33b0affa7863417eca07e91524/.command.err
Size
96.4 KB
Attempt
-ctat genome lib [/tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.HhG37byncT/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.HhG37byncT/./star-fusion.preliminary
-sample contains 221517982 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir  -J /tmp/nxf.HhG37byncT/aih-tih-sc-58b830-R1_A23WJ53LT4_1.Chimeric.out.junction  -O /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.HhG37byncT/aih-tih-sc-58b830-R1_A23WJ53LT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=100000.00/min 
[20000], rate=109090.91/min 
[30000], rate=105882.35/min 
[40000], rate=104347.83/min 
[50000], rate=90909.09/min 
[60000], rate=69230.77/min 
[70000], rate=53164.56/min 
[80000], rate=51612.90/min 
[90000], rate=50467.29/min 
[100000], rate=49586.78/min 
[110000], rate=48888.89/min 
[120000], rate=48648.65/min 
[130000], rate=48447.20/min 
[140000], rate=48554.91/min 
[150000], rate=49180.33/min 
[160000], rate=49230.77/min 
[170000], rate=49275.36/min 
[180000], rate=49541.28/min 
[190000], rate=49781.66/min 
[200000], rate=50420.17/min 
[210000], rate=50806.45/min 
[220000], rate=51361.87/min 
[230000], rate=52075.47/min 
[240000], rate=52554.74/min 
[250000], rate=53380.78/min 
[260000], rate=54355.40/min 
[270000], rate=54915.25/min 
[280000], rate=56187.29/min 
[290000], rate=57236.84/min 
[300000], rate=58252.43/min 
[310000], rate=58860.76/min 
[320000], rate=59627.33/min 
[330000], rate=60365.85/min 
[340000], rate=61445.78/min 
[350000], rate=62130.18/min 
[360000], rate=62790.70/min 
[370000], rate=63428.57/min 
[380000], rate=64225.35/min 
[390000], rate=65000.00/min 
[400000], rate=65753.42/min 
[410000], rate=66486.49/min 
[420000], rate=67200.00/min 
[430000], rate=67894.74/min 
[440000], rate=68217.05/min 
[450000], rate=67500.00/min 
[460000], rate=66666.67/min 
[470000], rate=65887.85/min 
[480000], rate=65306.12/min 
[490000], rate=64900.66/min 
[500000], rate=64377.68/min 
[510000], rate=64016.74/min 
[520000], rate=63543.79/min 
[530000], rate=63220.68/min 
[540000], rate=62548.26/min 
[550000], rate=61913.70/min 
[560000], rate=61538.46/min 
[570000], rate=61290.32/min 
[580000], rate=60945.71/min 
[590000], rate=60616.44/min 
[600000], rate=60402.68/min 
[610000], rate=60296.54/min 
[620000], rate=60194.17/min 
[630000], rate=60095.39/min 
[640000], rate=60093.90/min 
[650000], rate=60185.19/min 
[660000], rate=60000.00/min 
[670000], rate=60089.69/min 
[680000], rate=60265.88/min 
[690000], rate=60437.96/min 
[700000], rate=60693.64/min 
[710000], rate=61119.08/min 
[720000], rate=61363.64/min 
[730000], rate=61690.14/min 
[740000], rate=61924.69/min 
[750000], rate=62240.66/min 
[760000], rate=62637.36/min 
[770000], rate=63028.65/min 
[780000], rate=63414.63/min 
[790000], rate=63709.68/min 
[800000], rate=63408.19/min 
[810000], rate=62871.93/min 
[820000], rate=62436.55/min 
[830000], rate=62017.43/min 
[840000], rate=61613.69/min 
[850000], rate=61298.08/min 
[860000], rate=60992.91/min 
[870000], rate=60486.67/min 
[880000], rate=60136.67/min 
[890000], rate=60067.49/min 
[900000], rate=59866.96/min 
[910000], rate=59672.13/min 
[920000], rate=59675.68/min 
[930000], rate=59615.38/min 
[940000], rate=59682.54/min 
[950000], rate=59685.86/min 
[960000], rate=59565.67/min 
[970000], rate=59631.15/min 
[980000], rate=59756.10/min 
[990000], rate=59818.73/min 
[1000000], rate=59940.06/min 
[1010000], rate=59881.42/min 
[1020000], rate=59882.58/min 
[1030000], rate=59652.51/min 
[1040000], rate=59372.03/min 
[1050000], rate=58604.65/min 
[1060000], rate=58671.59/min 
[1070000], rate=58791.21/min 
[1080000], rate=58909.09/min 
[1090000], rate=59025.27/min 
[1100000], rate=59139.78/min 
[1110000], rate=59305.43/min 
[1120000], rate=59521.70/min 
[1130000], rate=59162.30/min 
[1140000], rate=58712.45/min 
[1150000], rate=58277.03/min 
[1160000], rate=58048.37/min 
[1170000], rate=57968.62/min 
[1180000], rate=57795.92/min 
[1190000], rate=58048.78/min 
[1200000], rate=58346.84/min 
[1210000], rate=58595.64/min 
[1220000], rate=58842.44/min 
[1230000], rate=58992.81/min 
[1240000], rate=58814.23/min 
[1250000], rate=58685.45/min 
[1260000], rate=58019.95/min 
[1270000], rate=57422.76/min 
[1280000], rate=56762.75/min 
[1290000], rate=56744.87/min 
[1300000], rate=56480.81/min 
[1310000], rate=56263.42/min 
[1320000], rate=56210.08/min 
[1330000], rate=56236.79/min 
[1340000], rate=56341.98/min 
[1350000], rate=56055.36/min 
[1360000], rate=55775.80/min 
[1370000], rate=55615.70/min 
[1380000], rate=55682.58/min 
[1390000], rate=55823.29/min 
[1400000], rate=55813.95/min 
[1410000], rate=55841.58/min 
[1420000], rate=55978.98/min 
[1430000], rate=56115.11/min 
[1440000], rate=56396.87/min 
[1450000], rate=56714.47/min 
[1460000], rate=56994.14/min 
[1470000], rate=57309.94/min 
[1480000], rate=57624.92/min 
[1490000], rate=57864.08/min 
[1500000], rate=58027.08/min 
[1510000], rate=58301.16/min 
[1520000], rate=58536.59/min 
[1530000], rate=58846.15/min 
[1540000], rate=59154.93/min 
[1550000], rate=59424.92/min 
[1560000], rate=59770.11/min 
[1570000], rate=60038.24/min 
[1580000], rate=60305.34/min 
[1590000], rate=60571.43/min 
[1600000], rate=60759.49/min 
[1610000], rate=60831.23/min 
[1620000], rate=60750.00/min 
[1630000], rate=60669.98/min 
[1640000], rate=60591.13/min 
[1650000], rate=60513.45/min 
[1660000], rate=60400.24/min 
[1670000], rate=60397.83/min 
[1680000], rate=60431.65/min 
[1690000], rate=60429.08/min 
[1700000], rate=60462.36/min 
[1710000], rate=60495.28/min 
[1720000], rate=60598.94/min 
[1730000], rate=60666.28/min 
[1740000], rate=60556.84/min 
[1750000], rate=60658.58/min 
[1760000], rate=60724.55/min 
[1770000], rate=60859.60/min 
[1780000], rate=60958.90/min 
[1790000], rate=61057.42/min 
[1800000], rate=61189.80/min 
[1810000], rate=61355.93/min 
[1820000], rate=61660.08/min 
[1830000], rate=61859.15/min 
[1840000], rate=61883.41/min 
[1850000], rate=61700.94/min 
[1860000], rate=61487.60/min 
[1870000], rate=61378.56/min 
[1880000], rate=61204.56/min 
[1890000], rate=61000.54/min 
[1900000], rate=60445.39/min 
[1910000], rate=59905.91/min 
[1920000], rate=59350.85/min 
[1930000], rate=58841.46/min 
[1940000], rate=58551.31/min 
[1950000], rate=58237.93/min 
[1960000], rate=57817.11/min 
[1970000], rate=57406.51/min 
[1980000], rate=57005.76/min 
[1990000], rate=56614.51/min 
[2000000], rate=56364.49/min 
[2010000], rate=56040.89/min 
[2020000], rate=55852.53/min 
[2030000], rate=55641.85/min 
[2040000], rate=55510.20/min 
[2050000], rate=55330.63/min 
[2060000], rate=55203.22/min 
[2070000], rate=55053.19/min 
[2080000], rate=55075.02/min 
[2090000], rate=55048.29/min 
[2100000], rate=54925.89/min 
[2110000], rate=54876.46/min 
[2120000], rate=54780.36/min -building interval tree based on /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=75000.00/min 
[20000], rate=75000.00/min 
[30000], rate=78260.87/min 
[40000], rate=66666.67/min 
[50000], rate=63829.79/min 
[60000], rate=60000.00/min 
[70000], rate=56756.76/min 
[80000], rate=57831.33/min 
[90000], rate=60000.00/min 
[100000], rate=61224.49/min 
[110000], rate=63461.54/min 
[120000], rate=66055.05/min 
[130000], rate=68421.05/min 
[140000], rate=70000.00/min 
[150000], rate=72000.00/min 
[160000], rate=74418.60/min 
[170000], rate=71830.99/min 
[180000], rate=65454.55/min 
[190000], rate=61621.62/min 
[200000], rate=58823.53/min 
[210000], rate=56756.76/min 
[220000], rate=55000.00/min 
[230000], rate=53281.85/min 
[240000], rate=52173.91/min 
[250000], rate=51369.86/min 
[260000], rate=50649.35/min 
[270000], rate=50000.00/min 
[280000], rate=49557.52/min 
[290000], rate=49152.54/min 
[300000], rate=49046.32/min 
[310000], rate=48691.10/min 
[320000], rate=48484.85/min 
[330000], rate=48768.47/min 
[340000], rate=48803.83/min 
[350000], rate=48498.85/min 
[360000], rate=48322.15/min 
[370000], rate=48156.18/min 
[380000], rate=48305.08/min 
[390000], rate=48447.20/min 
[400000], rate=48583.00/min 
[410000], rate=48712.87/min 
[420000], rate=48932.04/min 
[430000], rate=49142.86/min 
[440000], rate=49070.63/min 
[450000], rate=49090.91/min 
[460000], rate=49023.09/min 
[470000], rate=49128.92/min 
[480000], rate=49146.76/min 
[490000], rate=49246.23/min 
[500000], rate=49342.11/min 
[510000], rate=49434.57/min 
[520000], rate=49681.53/min 
[530000], rate=49921.51/min 
[540000], rate=50077.28/min 
[550000], rate=50381.68/min 
[560000], rate=50526.32/min 
[570000], rate=50741.84/min 
[580000], rate=51026.39/min 
[590000], rate=51230.10/min 
[600000], rate=51575.93/min 
[610000], rate=52062.59/min 
[620000], rate=52468.27/min 
[630000], rate=52867.13/min 
[640000], rate=53259.36/min 
[650000], rate=53571.43/min 
[660000], rate=53950.95/min 
[670000], rate=54251.01/min 
[680000], rate=54545.45/min 
[690000], rate=54907.16/min 
[700000], rate=55335.97/min 
[710000], rate=55686.27/min 
[720000], rate=56103.90/min 
[730000], rate=56443.30/min 
[740000], rate=56777.49/min 
[750000], rate=56890.01/min 
[760000], rate=56575.68/min 
[770000], rate=56617.65/min 
[780000], rate=56658.60/min 
[790000], rate=56834.53/min 
[800000], rate=56872.04/min 
[810000], rate=56975.38/min 
[820000], rate=57209.30/min 
[830000], rate=57439.45/min 
[840000], rate=57665.90/min 
[850000], rate=57627.12/min 
[860000], rate=57142.86/min 
[870000], rate=56616.05/min 
[880000], rate=56774.19/min 
[890000], rate=57112.30/min 
[900000], rate=57324.84/min 
[910000], rate=57594.94/min 
[920000], rate=58044.16/min 
[930000], rate=58613.45/min 
[940000], rate=59243.70/min 
[950000], rate=59811.12/min 
[960000], rate=60188.09/min 
[970000], rate=60498.96/min 
[980000], rate=60806.62/min 
[990000], rate=61048.30/min 
[1000000], rate=61538.46/min 
[1010000], rate=62153.85/min 
[1020000], rate=62576.69/min 
[1030000], rate=62741.12/min 
[1040000], rate=62903.23/min 
[1050000], rate=63189.57/min 
[1060000], rate=63409.77/min 
[1070000], rate=63564.36/min 
[1080000], rate=63968.41/min 
[1090000], rate=64560.71/min 
[1100000], rate=65088.76/min 
[1110000], rate=65680.47/min 
[1120000], rate=65947.01/min 
[1130000], rate=66146.34/min 
[1140000], rate=66343.36/min 
[1150000], rate=66218.81/min 
[1160000], rate=66348.90/min 
[1170000], rate=66857.14/min 
[1180000], rate=67172.68/min 
[1190000], rate=67231.64/min 
[1200000], rate=67352.67/min 
[1210000], rate=67534.88/min 
[1220000], rate=67590.03/min 
[1230000], rate=67830.88/min 
[1240000], rate=68007.31/min 
[1250000], rate=67934.78/min 
[1260000], rate=68416.29/min 
[1270000], rate=68896.93/min 
[1280000], rate=69251.58/min 
[1290000], rate=69354.84/min 
[1300000], rate=69395.02/min 
[1310000], rate=69557.52/min 
[1320000], rate=69230.77/min 
[1330000], rate=69331.02/min 
[1340000], rate=69550.17/min 
[1350000], rate=69767.44/min 
[1360000], rate=70042.92/min 
[1370000], rate=70256.41/min 
[1380000], rate=70348.34/min 
[1390000], rate=70439.19/min 
[1400000], rate=70351.76/min 
[1410000], rate=70441.30/min 
[1420000], rate=70239.08/min 
[1430000], rate=69529.98/min 
[1440000], rate=69009.58/min 
[1450000], rate=68992.86/min 
[1460000], rate=69194.31/min 
[1470000], rate=69285.15/min 
[1480000], rate=69375.00/min 
[1490000], rate=69141.53/min 
[1500000], rate=68702.29/min 
[1510000], rate=68274.30/min 
[1520000], rate=67907.67/min 
[1530000], rate=67949.67/min 
[1540000], rate=68091.38/min 
[1550000], rate=68181.82/min 
[1560000], rate=68221.57/min 
[1570000], rate=68211.44/min 
[1580000], rate=67665.95/min 
[1590000], rate=65838.51/min 
[1600000], rate=65040.65/min 
[1610000], rate=64357.10/min 
[1620000], rate=63821.41/min 
[1630000], rate=63260.03/min 
[1640000], rate=62835.25/min 
[1650000], rate=61567.16/min 
[1660000], rate=60144.93/min 
[1670000], rate=59010.60/min 
[1680000], rate=58604.65/min 
[1690000], rate=57942.86/min 
[1700000], rate=57627.12/min 
[1710000], rate=57382.55/min 
[1720000], rate=57174.52/min 
[1730000], rate=57127.13/min 
[1740000], rate=56893.73/min 
[1750000], rate=56756.76/min 
[1760000], rate=56652.36/min 
[1770000], rate=56579.65/min 
[1780000], rate=56329.11/min 
[1790000], rate=55734.30/min 
[1800000], rate=55130.17/min 
[1810000], rate=54627.77/min 
[1820000], rate=54193.55/min 
[1830000], rate=54142.01/min 
[1840000], rate=54117.65/min 
[1850000], rate=54146.34/min 
[1860000], rate=54148.47/min 
[1870000], rate=54202.90/min 
[1880000], rate=54282.96/min 
[1890000], rate=54336.37/min 
[1900000], rate=54285.71/min 
[1910000], rate=54031.12/min 
[1920000], rate=53831.78/min 
[1930000], rate=53660.80/min 
[1940000], rate=53690.04/min 
[1950000], rate=53842.61/min 
[1960000], rate=53846.15/min 
[1970000], rate=53147.48/min 
[1980000], rate=52566.37/min 
[1990000], rate=52460.46/min 
[2000000], rate=52378.87/min 
[2010000], rate=52321.04/min 
[2020000], rate=52263.91/min 
[2030000], rate=52229.85/min 
[2040000], rate=52196.16/min 
[2050000], rate=52229.30/min 
[2060000], rate=52218.00/min 
[2070000], rate=52206.81/min 
[2080000], rate=52239.43/min 
[2090000], rate=52271.78/min 
[2100000], rate=52303.86/min 
[2110000], rate=52378.98/min 
[2120000], rate=52431.99/min 
[2130000], rate=52527.74/min -building interval tree based on /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=120000.00/min 
[20000], rate=120000.00/min 
[30000], rate=112500.00/min 
[40000], rate=104347.83/min 
[50000], rate=103448.28/min 
[60000], rate=90000.00/min 
[70000], rate=80769.23/min 
[80000], rate=75000.00/min 
[90000], rate=71052.63/min 
[100000], rate=68181.82/min 
[110000], rate=67346.94/min 
[120000], rate=66055.05/min 
[130000], rate=64462.81/min 
[140000], rate=64615.38/min 
[150000], rate=64748.20/min 
[160000], rate=64864.86/min 
[170000], rate=65806.45/min 
[180000], rate=66666.67/min 
[190000], rate=67455.62/min 
[200000], rate=68181.82/min 
[210000], rate=68852.46/min 
[220000], rate=69841.27/min 
[230000], rate=70408.16/min 
[240000], rate=72361.81/min 
[250000], rate=73891.63/min 
[260000], rate=76470.59/min 
[270000], rate=77511.96/min 
[280000], rate=80000.00/min 
[290000], rate=81308.41/min 
[300000], rate=79295.15/min 
[310000], rate=77824.27/min 
[320000], rate=75889.33/min 
[330000], rate=74716.98/min 
[340000], rate=73913.04/min 
[350000], rate=73426.57/min 
[360000], rate=72240.80/min 
[370000], rate=71844.66/min 
[380000], rate=71250.00/min 
[390000], rate=71124.62/min 
[400000], rate=71216.62/min 
[410000], rate=71098.27/min 
[420000], rate=71388.10/min 
[430000], rate=71666.67/min 
[440000], rate=71739.13/min 
[450000], rate=72192.51/min 
[460000], rate=72440.94/min 
[470000], rate=72680.41/min 
[480000], rate=73282.44/min 
[490000], rate=74055.42/min 
[500000], rate=74441.69/min 
[510000], rate=74816.63/min 
[520000], rate=74641.15/min 
[530000], rate=73103.45/min 
[540000], rate=71681.42/min 
[550000], rate=70967.74/min 
[560000], rate=71186.44/min 
[570000], rate=70515.46/min 
[580000], rate=69461.08/min 
[590000], rate=68339.77/min 
[600000], rate=67542.21/min 
[610000], rate=67279.41/min 
[620000], rate=66906.47/min 
[630000], rate=66549.30/min 
[640000], rate=66435.99/min 
[650000], rate=65989.85/min 
[660000], rate=65780.73/min 
[670000], rate=65793.78/min 
[680000], rate=65700.48/min 
[690000], rate=65610.14/min 
[700000], rate=65217.39/min 
[710000], rate=65038.17/min 
[720000], rate=65158.37/min 
[730000], rate=65275.71/min 
[740000], rate=65294.12/min 
[750000], rate=65028.90/min 
[760000], rate=65049.93/min 
[770000], rate=64796.63/min 
[780000], rate=64909.85/min 
[790000], rate=64842.68/min 
[800000], rate=64602.96/min 
[810000], rate=64627.66/min 
[820000], rate=64566.93/min 
[830000], rate=64675.32/min 
[840000], rate=64698.33/min 
[850000], rate=64638.78/min 
[860000], rate=64500.00/min 
[870000], rate=64127.76/min 
[880000], rate=64077.67/min 
[890000], rate=63952.10/min 
[900000], rate=63829.79/min 
[910000], rate=63785.05/min 
[920000], rate=63667.82/min 
[930000], rate=63771.43/min 
[940000], rate=63728.81/min 
[950000], rate=63829.79/min 
[960000], rate=64000.00/min 
[970000], rate=64167.59/min 
[980000], rate=64403.07/min 
[990000], rate=64635.47/min 
[1000000], rate=64935.06/min 
[1010000], rate=65231.43/min 
[1020000], rate=64218.26/min 
[1030000], rate=63190.18/min 
[1040000], rate=61782.18/min 
[1050000], rate=60171.92/min 
[1060000], rate=58617.51/min 
[1070000], rate=56315.79/min 
[1080000], rate=53910.15/min 
[1090000], rate=52361.89/min 
[1100000], rate=51846.03/min 
[1110000], rate=51388.89/min 
[1120000], rate=51025.06/min 
[1130000], rate=50786.52/min 
[1140000], rate=50220.26/min 
[1150000], rate=50072.57/min 
[1160000], rate=50035.95/min 
[1170000], rate=49332.40/min 
[1180000], rate=48793.94/min 
[1190000], rate=48703.96/min 
[1200000], rate=48452.22/min 
[1210000], rate=48367.75/min 
[1220000], rate=48284.96/min 
[1230000], rate=48266.84/min 
[1240000], rate=48343.08/min 
[1250000], rate=48449.61/min 
[1260000], rate=48523.75/min 
[1270000], rate=48627.95/min 
[1280000], rate=48730.96/min 
[1290000], rate=48863.64/min 
[1300000], rate=48964.22/min 
[1310000], rate=49063.67/min 
[1320000], rate=48979.59/min 
[1330000], rate=48837.21/min 
[1340000], rate=48550.72/min 
[1350000], rate=48185.60/min 
[1360000], rate=48028.25/min 
[1370000], rate=47957.99/min 
[1380000], rate=47695.85/min 
[1390000], rate=47440.27/min 
[1400000], rate=47164.51/min 
[1410000], rate=47104.68/min 
[1420000], rate=47202.22/min 
[1430000], rate=47272.73/min 
[1440000], rate=47420.42/min 
[1450000], rate=47540.98/min 
[1460000], rate=47582.84/min 
[1470000], rate=47753.11/min 
[1480000], rate=47819.06/min 
[1490000], rate=47884.31/min 
[1500000], rate=48000.00/min 
[1510000], rate=48114.71/min 
[1520000], rate=48202.96/min 
[1530000], rate=48341.23/min 
[1540000], rate=48427.67/min 
[1550000], rate=48538.62/min 
[1560000], rate=48623.38/min 
[1570000], rate=48707.34/min 
[1580000], rate=48765.43/min 
[1590000], rate=48797.95/min 
[1600000], rate=48830.11/min 
[1610000], rate=48493.98/min 
[1620000], rate=48118.81/min 
[1630000], rate=47730.60/min 
[1640000], rate=47467.44/min 
[1650000], rate=47413.79/min 
[1660000], rate=47496.42/min 
[1670000], rate=47600.95/min 
[1680000], rate=47704.69/min 
[1690000], rate=47830.19/min 
[1700000], rate=47932.33/min 
[1710000], rate=48056.21/min 
[1720000], rate=48201.77/min 
[1730000], rate=48279.07/min 
[1740000], rate=48132.78/min 
[1750000], rate=47989.03/min 
[1760000], rate=47869.45/min 
[1770000], rate=47794.78/min 
[1780000], rate=47614.80/min 
[1790000], rate=47396.29/min 
[1800000], rate=47493.40/min 
[1810000], rate=47652.48/min 
[1820000], rate=47498.91/min 
[1830000], rate=47368.42/min 
[1840000], rate=47280.51/min 
[1850000], rate=47193.88/min 
[1860000], rate=47088.61/min 
[1870000], rate=47024.31/min 
[1880000], rate=46804.98/min 
[1890000], rate=45873.79/min 
[1900000], rate=44899.57/min 
[1910000], rate=44626.17/min 
[1920000], rate=44053.54/min 
[1930000], rate=43615.82/min 
[1940000], rate=43497.76/min 
[1950000], rate=43365.46/min 
[1960000], rate=43298.97/min 
[1970000], rate=43201.75/min 
[1980000], rate=43152.92/min 
[1990000], rate=43135.84/min 
[2000000], rate=43072.51/min 
[2010000], rate=43040.69/min 
[2020000], rate=43024.49/min 
[2030000], rate=42932.68/min 
[2040000], rate=42812.17/min 
[2050000], rate=42767.73/min 
[2060000], rate=42768.17/min 
[2070000], rate=42783.33/min 
[2080000], rate=42769.02/min 
[2090000], rate=42827.87/min 
[2100000], rate=42842.57/min 
[2110000], rate=42871.66/min -building interval tree based on /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=100000.00/min 
[20000], rate=92307.69/min 
[30000], rate=100000.00/min 
[40000], rate=104347.83/min 
[50000], rate=111111.11/min 
[60000], rate=109090.91/min 
[70000], rate=116666.67/min 
[80000], rate=133333.33/min 
[90000], rate=135000.00/min 
[100000], rate=130434.78/min 
[110000], rate=126923.08/min 
[120000], rate=126315.79/min 
[130000], rate=121875.00/min 
[140000], rate=123529.41/min 
[150000], rate=126760.56/min 
[160000], rate=128000.00/min 
[170000], rate=136000.00/min 
[180000], rate=138461.54/min 
[190000], rate=135714.29/min 
[200000], rate=136363.64/min 
[210000], rate=136956.52/min 
[220000], rate=136082.47/min 
[230000], rate=136633.66/min 
[240000], rate=138461.54/min 
[250000], rate=138888.89/min 
[260000], rate=140540.54/min 
[270000], rate=140869.57/min 
[280000], rate=140000.00/min 
[290000], rate=139200.00/min 
[300000], rate=139534.88/min 
[310000], rate=138805.97/min 
[320000], rate=140145.99/min 
[330000], rate=141428.57/min 
[340000], rate=142657.34/min 
[350000], rate=116022.10/min 
[360000], rate=94736.84/min 
[370000], rate=83458.65/min 
[380000], rate=76000.00/min 
[390000], rate=70909.09/min 
[400000], rate=66481.99/min 
[410000], rate=62436.55/min 
[420000], rate=60143.20/min 
[430000], rate=57589.29/min 
[440000], rate=54320.99/min 
[450000], rate=51330.80/min 
[460000], rate=49373.88/min 
[470000], rate=47554.81/min 
[480000], rate=46302.25/min 
[490000], rate=45300.46/min 
[500000], rate=43859.65/min 
[510000], rate=42797.20/min 
[520000], rate=42105.26/min 
[530000], rate=41514.36/min 
[540000], rate=40754.72/min 
[550000], rate=40000.00/min 
[560000], rate=39390.39/min 
[570000], rate=39085.71/min 
[580000], rate=38623.75/min 
[590000], rate=38228.94/min 
[600000], rate=38054.97/min 
[610000], rate=37270.88/min 
[620000], rate=36081.47/min 
[630000], rate=35261.19/min 
[640000], rate=35229.36/min 
[650000], rate=35198.56/min 
[660000], rate=35106.38/min 
[670000], rate=35109.17/min 
[680000], rate=35142.12/min 
[690000], rate=35204.08/min 
[700000], rate=35323.80/min 
[710000], rate=35440.93/min 
[720000], rate=35526.32/min 
[730000], rate=35638.73/min 
[740000], rate=35182.25/min 
[750000], rate=35046.73/min 
[760000], rate=35103.93/min 
[770000], rate=35159.82/min 
[780000], rate=35056.18/min 
[790000], rate=34801.76/min 
[800000], rate=34359.34/min 
[810000], rate=34033.61/min 
[820000], rate=34095.63/min 
[830000], rate=34203.30/min 
[840000], rate=34355.83/min 
[850000], rate=34090.91/min 
[860000], rate=34149.57/min 
[870000], rate=34251.97/min 
[880000], rate=33998.71/min 
[890000], rate=33754.74/min 
[900000], rate=33498.76/min 
[910000], rate=33374.08/min 
[920000], rate=33253.01/min 
[930000], rate=33155.08/min 
[940000], rate=33040.42/min 
[950000], rate=32986.11/min 
[960000], rate=32914.29/min 
[970000], rate=32844.24/min 
[980000], rate=32867.52/min 
[990000], rate=32853.98/min 
[1000000], rate=32858.71/min 
[1010000], rate=32916.89/min 
[1020000], rate=32903.23/min 
[1030000], rate=32924.88/min 
[1040000], rate=32980.97/min 
[1050000], rate=33018.87/min 
[1060000], rate=32783.51/min 
[1070000], rate=32588.83/min 
[1080000], rate=32416.21/min 
[1090000], rate=32296.30/min 
[1100000], rate=32195.12/min 
[1110000], rate=32283.08/min 
[1120000], rate=32401.16/min 
[1130000], rate=32393.69/min 
[1140000], rate=32401.71/min 
[1150000], rate=32379.16/min 
[1160000], rate=32282.00/min 
[1170000], rate=32231.40/min 
[1180000], rate=32137.99/min 
[1190000], rate=32118.76/min 
[1200000], rate=32114.18/min 
[1210000], rate=32109.69/min 
[1220000], rate=32105.26/min 
[1230000], rate=32086.96/min 
[1240000], rate=32096.64/min 
[1250000], rate=32106.16/min 
[1260000], rate=32101.91/min 
[1270000], rate=32138.34/min 
[1280000], rate=32160.80/min 
[1290000], rate=32263.44/min 
[1300000], rate=32445.92/min 
[1310000], rate=32600.58/min 
[1320000], rate=32077.76/min 
[1330000], rate=31958.35/min 
[1340000], rate=31955.48/min 
[1350000], rate=31940.06/min 
[1360000], rate=31850.12/min 
[1370000], rate=31811.15/min 
[1380000], rate=31809.45/min 
[1390000], rate=31856.38/min 
[1400000], rate=31902.77/min 
[1410000], rate=31936.58/min 
[1420000], rate=31981.98/min 
[1430000], rate=32038.83/min 
[1440000], rate=32095.10/min 
[1450000], rate=32079.65/min 
[1460000], rate=32123.21/min 
[1470000], rate=32225.06/min 
[1480000], rate=32326.17/min 
[1490000], rate=32262.72/min 
[1500000], rate=32097.00/min 
[1510000], rate=31968.95/min 
[1520000], rate=31843.58/min 
[1530000], rate=31742.74/min 
[1540000], rate=31622.18/min 
[1550000], rate=31504.07/min 
[1560000], rate=31398.86/min 
[1570000], rate=31483.96/min 
[1580000], rate=31578.95/min 
[1590000], rate=31683.83/min 
[1600000], rate=31798.61/min 
[1610000], rate=31902.25/min 
[1620000], rate=32026.36/min 
[1630000], rate=32139.34/min 
[1640000], rate=32294.06/min 
[1650000], rate=32427.12/min 
[1660000], rate=32549.02/min 
[1670000], rate=32681.02/min 
[1680000], rate=32801.82/min 
[1690000], rate=32943.47/min 
[1700000], rate=32935.10/min 
[1710000], rate=32884.62/min 
[1720000], rate=32834.87/min 
[1730000], rate=32620.99/min 
[1740000], rate=32372.09/min 
[1750000], rate=32317.64/min 
[1760000], rate=32313.34/min 
[1770000], rate=32318.93/min 
[1780000], rate=32324.46/min 
[1790000], rate=32349.40/min 
[1800000], rate=32364.40/min 
[1810000], rate=32417.91/min 
[1820000], rate=32442.07/min 
[1830000], rate=32485.21/min 
[1840000], rate=32527.99/min 
[1850000], rate=32560.87/min 
[1860000], rate=32423.01/min 
[1870000], rate=32315.67/min 
[1880000], rate=32376.58/min 
[1890000], rate=32427.80/min 
[1900000], rate=32460.14/min 
[1910000], rate=32529.09/min 
[1920000], rate=32597.62/min 
[1930000], rate=32674.94/min 
[1940000], rate=32742.62/min 
[1950000], rate=32837.50/min 
[1960000], rate=32922.73/min 
[1970000], rate=32989.12/min 
[1980000], rate=33055.09/min 
[1990000], rate=33139.05/min 
[2000000], rate=33167.50/min 
[2010000], rate=33150.08/min 
[2020000], rate=33123.80/min 
[2030000], rate=33097.83/min 
[2040000], rate=33125.85/min 
[2050000], rate=33135.78/min 
[2060000], rate=33127.85/min 
[2070000], rate=33173.08/min 
[2080000], rate=33244.54/min 
[2090000], rate=33315.62/min 
[2100000], rate=33395.18/min 
[2110000], rate=33483.21/min 
[2120000], rate=33526.62/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 12000000.00 reads per min processed...  
 9000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 5142857.14 reads per min processed...  
 4666666.67 reads per min processed...  
 4363636.36 reads per min processed...  
 4153846.15 reads per min processed...  
 4000000.00 reads per min processed...  
 3882352.94 reads per min processed...  
 4000000.00 reads per min processed...  
 3900000.00 reads per min processed...  
 3818181.82 reads per min processed...  
 3750000.00 reads per min processed...  
 3840000.00 reads per min processed...  
 3777777.78 reads per min processed...  
 3724137.93 reads per min processed...  
 3677419.35 reads per min processed...  
 3750000.00 reads per min processed...  
 3600000.00 reads per min processed...  
 3567567.57 reads per min processed...  
 3538461.54 reads per min processed...  
 3512195.12 reads per min processed...  
 3488372.09 reads per min processed...  
 3466666.67 reads per min processed...  
 3446808.51 reads per min processed...  
 3428571.43 reads per min processed...  
 3411764.71 reads per min processed...  
 3396226.42 reads per min processed...  
 3381818.18 reads per min processed...  
 3368421.05 reads per min processed...  
 3413793.10 reads per min processed...  
 3400000.00 reads per min processed...  
 3442622.95 reads per min processed...  
 3428571.43 reads per min processed...  
 3415384.62 reads per min processed...  
 3402985.07 reads per min processed...  
 3391304.35 reads per min processed...  
 3428571.43 reads per min processed...  
 3416666.67 reads per min processed...  
 3405405.41 reads per min processed...  
 3394736.84 reads per min processed...  
 3428571.43 reads per min processed...  
 3461538.46 reads per min processed...  
 3493670.89 reads per min processed...  
 3525000.00 reads per min processed...  
 3600000.00 reads per min processed...  
 3585365.85 reads per min processed...  
 3571428.57 reads per min processed...  
 3558139.53 reads per min processed...  
 3545454.55 reads per min processed...  
 3573033.71 reads per min processed...  
 3560439.56 reads per min processed...  
 3586956.52 reads per min processed...  
 3574468.09 reads per min processed...  
 3562500.00 reads per min processed...  
 3551020.41 reads per min processed...  
 3575757.58 reads per min processed...  
 3564356.44 reads per min processed...  
 3553398.06 reads per min processed...  
 3576923.08 reads per min processed...  
 3566037.74 reads per min processed...  
 3555555.56 reads per min processed...  
 3545454.55 reads per min processed...  
 3567567.57 reads per min processed...  
 3557522.12 reads per min processed...  
 3547826.09 reads per min processed...  
 3538461.54 reads per min processed...  
 3529411.76 reads per min processed...  
 3550000.00 reads per min processed...  
 3540983.61 reads per min processed...  
 3532258.06 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.HhG37byncT/aih-tih-sc-58b830-R1_A23WJ53LT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -242012.374302
EM: Round [1] log likelihood: -241889.369080
EM: Round [2] log likelihood: -241840.501425
EM: Round [3] log likelihood: -241816.487224
EM: Round [4] log likelihood: -241803.606034
EM: Round [5] log likelihood: -241796.356854
EM: Round [6] log likelihood: -241792.118013
EM: Round [7] log likelihood: -241789.544483
EM: Round [8] log likelihood: -241787.921993
EM: Round [9] log likelihood: -241786.861398
EM: Round [10] log likelihood: -241786.144647
EM: Round [11] log likelihood: -241785.645579
EM: Round [12] log likelihood: -241785.288686
EM: Round [13] log likelihood: -241785.027257
EM: Round [14] log likelihood: -241784.831498
EM: Round [15] log likelihood: -241784.681885
EM: Round [16] log likelihood: -241784.565322
EM: Round [17] log likelihood: -241784.472843
EM: Round [18] log likelihood: -241784.398202
EM: Round [19] log likelihood: -241784.336974
EM: Round [20] log likelihood: -241784.285983
EM: Round [21] log likelihood: -241784.242913
EM: Round [22] log likelihood: -241784.206059
EM: Round [23] log likelihood: -241784.174144
EM: Round [24] log likelihood: -241784.146204
EM: Round [25] log likelihood: -241784.121500
EM: Round [26] log likelihood: -241784.099460
EM: Round [27] log likelihood: -241784.079637
EM: Round [28] log likelihood: -241784.061675
EM: Round [29] log likelihood: -241784.045291
EM: Round [30] log likelihood: -241784.030253
EM: Round [31] log likelihood: -241784.016376
EM: Round [32] log likelihood: -241784.003503
EM: Round [33] log likelihood: -241783.991508
EM: Round [34] log likelihood: -241783.980282
EM: Round [35] log likelihood: -241783.969736
EM: Round [36] log likelihood: -241783.959793
EM: Round [37] log likelihood: -241783.950387
EM: Round [38] log likelihood: -241783.941463
EM: Round [39] log likelihood: -241783.932972
EM: Round [40] log likelihood: -241783.924873
EM: Round [41] log likelihood: -241783.917129
EM: Round [42] log likelihood: -241783.909709
EM: Round [43] log likelihood: -241783.902585
EM: Round [44] log likelihood: -241783.895732
EM: Round [45] log likelihood: -241783.889130
EM: Round [46] log likelihood: -241783.882758
EM: Round [47] log likelihood: -241783.876601
EM: Round [48] log likelihood: -241783.870643
EM: Round [49] log likelihood: -241783.864871
EM: Round [50] log likelihood: -241783.859273
EM: Round [51] log likelihood: -241783.853838
EM: Round [52] log likelihood: -241783.848556
EM: Round [53] log likelihood: -241783.843419
EM: Round [54] log likelihood: -241783.838418
EM: Round [55] log likelihood: -241783.833546
EM: Round [56] log likelihood: -241783.828798
EM: Round [57] log likelihood: -241783.824166
EM: Round [58] log likelihood: -241783.819645
EM: Round [59] log likelihood: -241783.815231
EM: Round [60] log likelihood: -241783.810918
EM: Round [61] log likelihood: -241783.806703
EM: Round [62] log likelihood: -241783.802580
EM: Round [63] log likelihood: -241783.798547
EM: Round [64] log likelihood: -241783.794601
EM: Round [65] log likelihood: -241783.790737
EM: Round [66] log likelihood: -241783.786954
EM: Round [67] log likelihood: -241783.783247
EM: Round [68] log likelihood: -241783.779615
EM: Round [69] log likelihood: -241783.776056
EM: Round [70] log likelihood: -241783.772566
EM: Round [71] log likelihood: -241783.769143
EM: Round [72] log likelihood: -241783.765787
EM: Round [73] log likelihood: -241783.762493
EM: Round [74] log likelihood: -241783.759262
EM: Round [75] log likelihood: -241783.756091
EM: Round [76] log likelihood: -241783.752978
EM: Round [77] log likelihood: -241783.749921
EM: Round [78] log likelihood: -241783.746920
EM: Round [79] log likelihood: -241783.743973
EM: Round [80] log likelihood: -241783.741078
EM: Round [81] log likelihood: -241783.738234
EM: Round [82] log likelihood: -241783.735439
EM: Round [83] log likelihood: -241783.732694
EM: Round [84] log likelihood: -241783.729995
EM: Round [85] log likelihood: -241783.727343
EM: Round [86] log likelihood: -241783.724736
EM: Round [87] log likelihood: -241783.722173
EM: Round [88] log likelihood: -241783.719654
EM: Round [89] log likelihood: -241783.717176
EM: Round [90] log likelihood: -241783.714740
EM: Round [91] log likelihood: -241783.712344
EM: Round [92] log likelihood: -241783.709987
EM: Round [93] log likelihood: -241783.707669
EM: Round [94] log likelihood: -241783.705389
EM: Round [95] log likelihood: -241783.703146
EM: Round [96] log likelihood: -241783.700939
EM: Round [97] log likelihood: -241783.698767
EM: Round [98] log likelihood: -241783.696630
EM: Round [99] log likelihood: -241783.694527
EM: Round [100] log likelihood: -241783.692458
EM: Round [101] log likelihood: -241783.690421
EM: Round [102] log likelihood: -241783.688416
EM: Round [103] log likelihood: -241783.686443
EM: Round [104] log likelihood: -241783.684500
EM: Round [105] log likelihood: -241783.682588
EM: Round [106] log likelihood: -241783.680705
EM: Round [107] log likelihood: -241783.678852
EM: Round [108] log likelihood: -241783.677027
EM: Round [109] log likelihood: -241783.675230
EM: Round [110] log likelihood: -241783.673461
EM: Round [111] log likelihood: -241783.671718
EM: Round [112] log likelihood: -241783.670002
EM: Round [113] log likelihood: -241783.668312
EM: Round [114] log likelihood: -241783.666648
EM: Round [115] log likelihood: -241783.665009
EM: Round [116] log likelihood: -241783.663395
EM: Round [117] log likelihood: -241783.661804
EM: Round [118] log likelihood: -241783.660238
EM: Round [119] log likelihood: -241783.658695
EM: Round [120] log likelihood: -241783.657175
EM: Round [121] log likelihood: -241783.655677
EM: Round [122] log likelihood: -241783.654202
EM: Round [123] log likelihood: -241783.652749
EM: Round [124] log likelihood: -241783.651317
EM: Round [125] log likelihood: -241783.649906
EM: Round [126] log likelihood: -241783.648516
EM: Round [127] log likelihood: -241783.647146
EM: Round [128] log likelihood: -241783.645796
EM: Round [129] log likelihood: -241783.644466
EM: Round [130] log likelihood: -241783.643156
EM: Round [131] log likelihood: -241783.641864
EM: Round [132] log likelihood: -241783.640592
EM: Round [133] log likelihood: -241783.639337
EM: Round [134] log likelihood: -241783.638101
EM: Round [135] log likelihood: -241783.636883
EM: Round [136] log likelihood: -241783.635682
EM: Round [137] log likelihood: -241783.634499
EM: Round [138] log likelihood: -241783.633333
EM: Round [139] log likelihood: -241783.632183
EM: Round [140] log likelihood: -241783.631050
EM: Round [141] log likelihood: -241783.629933
EM: Round [142] log likelihood: -241783.628832
EM: Round [143] log likelihood: -241783.627747
EM: Round [144] log likelihood: -241783.626677
EM: Round [145] log likelihood: -241783.625622
EM: Round [146] log likelihood: -241783.624583
EM: Round [147] log likelihood: -241783.623558
EM: Round [148] log likelihood: -241783.622547
EM: Round [149] log likelihood: -241783.621551
EM: Round [150] log likelihood: -241783.620569
EM: Round [151] log likelihood: -241783.619601
EM: Round [152] log likelihood: -241783.618647
EM: Round [153] log likelihood: -241783.617706
EM: Round [154] log likelihood: -241783.616778
EM: Round [155] log likelihood: -241783.615863
EM: Round [156] log likelihood: -241783.614961
EM: Round [157] log likelihood: -241783.614072
EM: Round [158] log likelihood: -241783.613195
EM: Round [159] log likelihood: -241783.612331
EM: Round [160] log likelihood: -241783.611478
EM: Round [161] log likelihood: -241783.610638
EM: Round [162] log likelihood: -241783.609809
EM: Round [163] log likelihood: -241783.608992
EM: Round [164] log likelihood: -241783.608186
EM: Round [165] log likelihood: -241783.607391
EM: Round [166] log likelihood: -241783.606607
EM: Round [167] log likelihood: -241783.605834
EM: Round [168] log likelihood: -241783.605072
EM: Round [169] log likelihood: -241783.604321
EM: Round [170] log likelihood: -241783.603580
EM: Round [171] log likelihood: -241783.602849
EM: Round [172] log likelihood: -241783.602128
EM: Round [173] log likelihood: -241783.601417
EM: Round [174] log likelihood: -241783.600716
EM: Round [175] log likelihood: -241783.600024
EM: Round [176] log likelihood: -241783.599343
EM: Round [177] log likelihood: -241783.598670
EM: Round [178] log likelihood: -241783.598007
EM: Round [179] log likelihood: -241783.597353
EM: Round [180] log likelihood: -241783.596707
EM: Round [181] log likelihood: -241783.596071
EM: Round [182] log likelihood: -241783.595443
EM: Round [183] log likelihood: -241783.594824
EM: Round [184] log likelihood: -241783.594214
EM: Round [185] log likelihood: -241783.593612
EM: Round [186] log likelihood: -241783.593018
EM: Round [187] log likelihood: -241783.592432
EM: Round [188] log likelihood: -241783.591854
EM: Round [189] log likelihood: -241783.591284
EM: Round [190] log likelihood: -241783.590722
EM: Round [191] log likelihood: -241783.590167
EM: Round [192] log likelihood: -241783.589620
EM: Round [193] log likelihood: -241783.589081
EM: Round [194] log likelihood: -241783.588548
EM: Round [195] log likelihood: -241783.588023
EM: Round [196] log likelihood: -241783.587506
EM: Round [197] log likelihood: -241783.586995
EM: Round [198] log likelihood: -241783.586491
EM: Round [199] log likelihood: -241783.585994
EM: Round [200] log likelihood: -241783.585503
EM: Round [201] log likelihood: -241783.585020
EM: Round [202] log likelihood: -241783.584543
EM: Round [203] log likelihood: -241783.584072
EM: Round [204] log likelihood: -241783.583608
EM: Round [205] log likelihood: -241783.583149
EM: Round [206] log likelihood: -241783.582698
EM: Round [207] log likelihood: -241783.582252
EM: Round [208] log likelihood: -241783.581812
EM: Round [209] log likelihood: -241783.581378
EM: Round [210] log likelihood: -241783.580950
EM: Round [211] log likelihood: -241783.580528
EM: Round [212] log likelihood: -241783.580112
EM: Round [213] log likelihood: -241783.579701
EM: Round [214] log likelihood: -241783.579295
EM: Round [215] log likelihood: -241783.578895
EM: Round [216] log likelihood: -241783.578501
EM: Round [217] log likelihood: -241783.578112
EM: Round [218] log likelihood: -241783.577728
EM: Round [219] log likelihood: -241783.577349
EM: Round [220] log likelihood: -241783.576975
EM: Round [221] log likelihood: -241783.576606
EM: Round [222] log likelihood: -241783.576242
EM: Round [223] log likelihood: -241783.575883
EM: Round [224] log likelihood: -241783.575529
EM: Round [225] log likelihood: -241783.575180
EM: Round [226] log likelihood: -241783.574835
EM: Round [227] log likelihood: -241783.574495
EM: Round [228] log likelihood: -241783.574160
EM: Round [229] log likelihood: -241783.573829
EM: Round [230] log likelihood: -241783.573502
EM: Round [231] log likelihood: -241783.573180
EM: Round [232] log likelihood: -241783.572862
EM: Round [233] log likelihood: -241783.572548
EM: Round [234] log likelihood: -241783.572239
EM: Round [235] log likelihood: -241783.571933
EM: Round [236] log likelihood: -241783.571632
EM: Round [237] log likelihood: -241783.571335
EM: Round [238] log likelihood: -241783.571041
EM: Round [239] log likelihood: -241783.570752
EM: Round [240] log likelihood: -241783.570466
EM: Round [241] log likelihood: -241783.570185
EM: Round [242] log likelihood: -241783.569907
EM: Round [243] log likelihood: -241783.569632
EM: Round [244] log likelihood: -241783.569362
EM: Round [245] log likelihood: -241783.569095
EM: Round [246] log likelihood: -241783.568831
EM: Round [247] log likelihood: -241783.568571
EM: Round [248] log likelihood: -241783.568315
EM: Round [249] log likelihood: -241783.568062
EM: Round [250] log likelihood: -241783.567812
EM: Round [251] log likelihood: -241783.567566
EM: Round [252] log likelihood: -241783.567322
EM: Round [253] log likelihood: -241783.567082
EM: Round [254] log likelihood: -241783.566846
EM: Round [255] log likelihood: -241783.566612
EM: Round [256] log likelihood: -241783.566382
EM: Round [257] log likelihood: -241783.566154
EM: Round [258] log likelihood: -241783.565930
EM: Round [259] log likelihood: -241783.565708
EM: Round [260] log likelihood: -241783.565490
EM: Round [261] log likelihood: -241783.565274
EM: Round [262] log likelihood: -241783.565062
EM: Round [263] log likelihood: -241783.564852
EM: Round [264] log likelihood: -241783.564645
EM: Round [265] log likelihood: -241783.564440
EM: Round [266] log likelihood: -241783.564238
EM: Round [267] log likelihood: -241783.564039
EM: Round [268] log likelihood: -241783.563843
EM: Round [269] log likelihood: -241783.563649
EM: Round [270] log likelihood: -241783.563458
EM: Round [271] log likelihood: -241783.563269
EM: Round [272] log likelihood: -241783.563083
EM: Round [273] log likelihood: -241783.562899
EM: Round [274] log likelihood: -241783.562718
EM: Round [275] log likelihood: -241783.562539
EM: Round [276] log likelihood: -241783.562363
EM: Round [277] log likelihood: -241783.562188
EM: Round [278] log likelihood: -241783.562017
EM: Round [279] log likelihood: -241783.561847
EM: Round [280] log likelihood: -241783.561680
EM: Round [281] log likelihood: -241783.561514
EM: Round [282] log likelihood: -241783.561351
EM: Round [283] log likelihood: -241783.561191
EM: Round [284] log likelihood: -241783.561032
EM: Round [285] log likelihood: -241783.560875
EM: Round [286] log likelihood: -241783.560721
EM: Round [287] log likelihood: -241783.560568
EM: Round [288] log likelihood: -241783.560418
EM: Round [289] log likelihood: -241783.560269
EM: Round [290] log likelihood: -241783.560122
EM: Round [291] log likelihood: -241783.559978
EM: Round [292] log likelihood: -241783.559835
EM: Round [293] log likelihood: -241783.559694
EM: Round [294] log likelihood: -241783.559555
EM: Round [295] log likelihood: -241783.559418
EM: Round [296] log likelihood: -241783.559283
EM: Round [297] log likelihood: -241783.559149
EM: Round [298] log likelihood: -241783.559017
EM: Round [299] log likelihood: -241783.558887
EM: Round [300] log likelihood: -241783.558759
EM: Round [301] log likelihood: -241783.558632
EM: Round [302] log likelihood: -241783.558507
EM: Round [303] log likelihood: -241783.558384
EM: Round [304] log likelihood: -241783.558262
EM: Round [305] log likelihood: -241783.558142
EM: Round [306] log likelihood: -241783.558023
EM: Round [307] log likelihood: -241783.557906
EM: Round [308] log likelihood: -241783.557791
EM: Round [309] log likelihood: -241783.557677
EM: Round [310] log likelihood: -241783.557565
EM: Round [311] log likelihood: -241783.557454
EM: Round [312] log likelihood: -241783.557344
EM: Round [313] log likelihood: -241783.557236
EM: Round [314] log likelihood: -241783.557129
EM: Round [315] log likelihood: -241783.557024
EM: Round [316] log likelihood: -241783.556920
EM: Round [317] log likelihood: -241783.556818
EM: Round [318] log likelihood: -241783.556717
EM: Round [319] log likelihood: -241783.556617
EM: Stopping iterations at round 319 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -241874.319554
EM: Round [1] log likelihood: -241769.634876
EM: Round [2] log likelihood: -241729.032964
EM: Round [3] log likelihood: -241709.399621
EM: Round [4] log likelihood: -241699.003665
EM: Round [5] log likelihood: -241693.235003
EM: Round [6] log likelihood: -241689.917886
EM: Round [7] log likelihood: -241687.942474
EM: Round [8] log likelihood: -241686.723265
EM: Round [9] log likelihood: -241685.944024
EM: Round [10] log likelihood: -241685.429436
EM: Round [11] log likelihood: -241685.079326
EM: Round [12] log likelihood: -241684.834564
EM: Round [13] log likelihood: -241684.659109
EM: Round [14] log likelihood: -241684.530330
EM: Round [15] log likelihood: -241684.433634
EM: Round [16] log likelihood: -241684.359395
EM: Round [17] log likelihood: -241684.301138
EM: Round [18] log likelihood: -241684.254433
EM: Round [19] log likelihood: -241684.216205
EM: Round [20] log likelihood: -241684.184292
EM: Round [21] log likelihood: -241684.157153
EM: Round [22] log likelihood: -241684.133679
EM: Round [23] log likelihood: -241684.113060
EM: Round [24] log likelihood: -241684.094699
EM: Round [25] log likelihood: -241684.078154
EM: Round [26] log likelihood: -241684.063087
EM: Round [27] log likelihood: -241684.049242
EM: Round [28] log likelihood: -241684.036422
EM: Round [29] log likelihood: -241684.024471
EM: Round [30] log likelihood: -241684.013267
EM: Round [31] log likelihood: -241684.002710
EM: Round [32] log likelihood: -241683.992722
EM: Round [33] log likelihood: -241683.983237
EM: Round [34] log likelihood: -241683.974201
EM: Round [35] log likelihood: -241683.965567
EM: Round [36] log likelihood: -241683.957299
EM: Round [37] log likelihood: -241683.949362
EM: Round [38] log likelihood: -241683.941729
EM: Round [39] log likelihood: -241683.934375
EM: Round [40] log likelihood: -241683.927279
EM: Round [41] log likelihood: -241683.920423
EM: Round [42] log likelihood: -241683.913789
EM: Round [43] log likelihood: -241683.907363
EM: Round [44] log likelihood: -241683.901131
EM: Round [45] log likelihood: -241683.895083
EM: Round [46] log likelihood: -241683.889207
EM: Round [47] log likelihood: -241683.883494
EM: Round [48] log likelihood: -241683.877935
EM: Round [49] log likelihood: -241683.872522
EM: Round [50] log likelihood: -241683.867248
EM: Round [51] log likelihood: -241683.862106
EM: Round [52] log likelihood: -241683.857090
EM: Round [53] log likelihood: -241683.852194
EM: Round [54] log likelihood: -241683.847414
EM: Round [55] log likelihood: -241683.842744
EM: Round [56] log likelihood: -241683.838180
EM: Round [57] log likelihood: -241683.833717
EM: Round [58] log likelihood: -241683.829352
EM: Round [59] log likelihood: -241683.825082
EM: Round [60] log likelihood: -241683.820902
EM: Round [61] log likelihood: -241683.816809
EM: Round [62] log likelihood: -241683.812802
EM: Round [63] log likelihood: -241683.808875
EM: Round [64] log likelihood: -241683.805028
EM: Round [65] log likelihood: -241683.801257
EM: Round [66] log likelihood: -241683.797560
EM: Round [67] log likelihood: -241683.793935
EM: Round [68] log likelihood: -241683.790379
EM: Round [69] log likelihood: -241683.786891
EM: Round [70] log likelihood: -241683.783469
EM: Round [71] log likelihood: -241683.780110
EM: Round [72] log likelihood: -241683.776813
EM: Round [73] log likelihood: -241683.773577
EM: Round [74] log likelihood: -241683.770399
EM: Round [75] log likelihood: -241683.767279
EM: Round [76] log likelihood: -241683.764214
EM: Round [77] log likelihood: -241683.761203
EM: Round [78] log likelihood: -241683.758245
EM: Round [79] log likelihood: -241683.755339
EM: Round [80] log likelihood: -241683.752483
EM: Round [81] log likelihood: -241683.749677
EM: Round [82] log likelihood: -241683.746918
EM: Round [83] log likelihood: -241683.744206
EM: Round [84] log likelihood: -241683.741540
EM: Round [85] log likelihood: -241683.738919
EM: Round [86] log likelihood: -241683.736341
EM: Round [87] log likelihood: -241683.733806
EM: Round [88] log likelihood: -241683.731313
EM: Round [89] log likelihood: -241683.728861
EM: Round [90] log likelihood: -241683.726449
EM: Round [91] log likelihood: -241683.724076
EM: Round [92] log likelihood: -241683.721742
EM: Round [93] log likelihood: -241683.719445
EM: Round [94] log likelihood: -241683.717185
EM: Round [95] log likelihood: -241683.714961
EM: Round [96] log likelihood: -241683.712773
EM: Round [97] log likelihood: -241683.710619
EM: Round [98] log likelihood: -241683.708499
EM: Round [99] log likelihood: -241683.706413
EM: Round [100] log likelihood: -241683.704359
EM: Round [101] log likelihood: -241683.702337
EM: Round [102] log likelihood: -241683.700346
EM: Round [103] log likelihood: -241683.698387
EM: Round [104] log likelihood: -241683.696457
EM: Round [105] log likelihood: -241683.694557
EM: Round [106] log likelihood: -241683.692687
EM: Round [107] log likelihood: -241683.690845
EM: Round [108] log likelihood: -241683.689031
EM: Round [109] log likelihood: -241683.687244
EM: Round [110] log likelihood: -241683.685485
EM: Round [111] log likelihood: -241683.683752
EM: Round [112] log likelihood: -241683.682046
EM: Round [113] log likelihood: -241683.680365
EM: Round [114] log likelihood: -241683.678709
EM: Round [115] log likelihood: -241683.677078
EM: Round [116] log likelihood: -241683.675471
EM: Round [117] log likelihood: -241683.673889
EM: Round [118] log likelihood: -241683.672329
EM: Round [119] log likelihood: -241683.670793
EM: Round [120] log likelihood: -241683.669280
EM: Round [121] log likelihood: -241683.667789
EM: Round [122] log likelihood: -241683.666319
EM: Round [123] log likelihood: -241683.664872
EM: Round [124] log likelihood: -241683.663445
EM: Round [125] log likelihood: -241683.662040
EM: Round [126] log likelihood: -241683.660655
EM: Round [127] log likelihood: -241683.659290
EM: Round [128] log likelihood: -241683.657945
EM: Round [129] log likelihood: -241683.656619
EM: Round [130] log likelihood: -241683.655313
EM: Round [131] log likelihood: -241683.654026
EM: Round [132] log likelihood: -241683.652757
EM: Round [133] log likelihood: -241683.651506
EM: Round [134] log likelihood: -241683.650274
EM: Round [135] log likelihood: -241683.649059
EM: Round [136] log likelihood: -241683.647862
EM: Round [137] log likelihood: -241683.646681
EM: Round [138] log likelihood: -241683.645518
EM: Round [139] log likelihood: -241683.644371
EM: Round [140] log likelihood: -241683.643241
EM: Round [141] log likelihood: -241683.642127
EM: Round [142] log likelihood: -241683.641028
EM: Round [143] log likelihood: -241683.639946
EM: Round [144] log likelihood: -241683.638878
EM: Round [145] log likelihood: -241683.637826
EM: Round [146] log likelihood: -241683.636788
EM: Round [147] log likelihood: -241683.635766
EM: Round [148] log likelihood: -241683.634757
EM: Round [149] log likelihood: -241683.633763
EM: Round [150] log likelihood: -241683.632783
EM: Round [151] log likelihood: -241683.631817
EM: Round [152] log likelihood: -241683.630864
EM: Round [153] log likelihood: -241683.629925
EM: Round [154] log likelihood: -241683.628998
EM: Round [155] log likelihood: -241683.628085
EM: Round [156] log likelihood: -241683.627185
EM: Round [157] log likelihood: -241683.626297
EM: Round [158] log likelihood: -241683.625421
EM: Round [159] log likelihood: -241683.624558
EM: Round [160] log likelihood: -241683.623707
EM: Round [161] log likelihood: -241683.622867
EM: Round [162] log likelihood: -241683.622039
EM: Round [163] log likelihood: -241683.621223
EM: Round [164] log likelihood: -241683.620418
EM: Round [165] log likelihood: -241683.619624
EM: Round [166] log likelihood: -241683.618842
EM: Round [167] log likelihood: -241683.618070
EM: Round [168] log likelihood: -241683.617308
EM: Round [169] log likelihood: -241683.616558
EM: Round [170] log likelihood: -241683.615817
EM: Round [171] log likelihood: -241683.615087
EM: Round [172] log likelihood: -241683.614367
EM: Round [173] log likelihood: -241683.613657
EM: Round [174] log likelihood: -241683.612956
EM: Round [175] log likelihood: -241683.612266
EM: Round [176] log likelihood: -241683.611584
EM: Round [177] log likelihood: -241683.610912
EM: Round [178] log likelihood: -241683.610250
EM: Round [179] log likelihood: -241683.609596
EM: Round [180] log likelihood: -241683.608951
EM: Round [181] log likelihood: -241683.608315
EM: Round [182] log likelihood: -241683.607688
EM: Round [183] log likelihood: -241683.607070
EM: Round [184] log likelihood: -241683.606460
EM: Round [185] log likelihood: -241683.605858
EM: Round [186] log likelihood: -241683.605264
EM: Round [187] log likelihood: -241683.604679
EM: Round [188] log likelihood: -241683.604101
EM: Round [189] log likelihood: -241683.603532
EM: Round [190] log likelihood: -241683.602970
EM: Round [191] log likelihood: -241683.602415
EM: Round [192] log likelihood: -241683.601869
EM: Round [193] log likelihood: -241683.601330
EM: Round [194] log likelihood: -241683.600798
EM: Round [195] log likelihood: -241683.600273
EM: Round [196] log likelihood: -241683.599755
EM: Round [197] log likelihood: -241683.599245
EM: Round [198] log likelihood: -241683.598741
EM: Round [199] log likelihood: -241683.598244
EM: Round [200] log likelihood: -241683.597754
EM: Round [201] log likelihood: -241683.597271
EM: Round [202] log likelihood: -241683.596794
EM: Round [203] log likelihood: -241683.596323
EM: Round [204] log likelihood: -241683.595859
EM: Round [205] log likelihood: -241683.595401
EM: Round [206] log likelihood: -241683.594949
EM: Round [207] log likelihood: -241683.594504
EM: Round [208] log likelihood: -241683.594064
EM: Round [209] log likelihood: -241683.593630
EM: Round [210] log likelihood: -241683.593203
EM: Round [211] log likelihood: -241683.592781
EM: Round [212] log likelihood: -241683.592364
EM: Round [213] log likelihood: -241683.591953
EM: Round [214] log likelihood: -241683.591548
EM: Round [215] log likelihood: -241683.591148
EM: Round [216] log likelihood: -241683.590754
EM: Round [217] log likelihood: -241683.590365
EM: Round [218] log likelihood: -241683.589981
EM: Round [219] log likelihood: -241683.589602
EM: Round [220] log likelihood: -241683.589228
EM: Round [221] log likelihood: -241683.588860
EM: Round [222] log likelihood: -241683.588496
EM: Round [223] log likelihood: -241683.588137
EM: Round [224] log likelihood: -241683.587783
EM: Round [225] log likelihood: -241683.587434
EM: Round [226] log likelihood: -241683.587089
EM: Round [227] log likelihood: -241683.586749
EM: Round [228] log likelihood: -241683.586414
EM: Round [229] log likelihood: -241683.586083
EM: Round [230] log likelihood: -241683.585756
EM: Round [231] log likelihood: -241683.585434
EM: Round [232] log likelihood: -241683.585116
EM: Round [233] log likelihood: -241683.584802
EM: Round [234] log likelihood: -241683.584493
EM: Round [235] log likelihood: -241683.584188
EM: Round [236] log likelihood: -241683.583886
EM: Round [237] log likelihood: -241683.583589
EM: Round [238] log likelihood: -241683.583296
EM: Round [239] log likelihood: -241683.583007
EM: Round [240] log likelihood: -241683.582721
EM: Round [241] log likelihood: -241683.582439
EM: Round [242] log likelihood: -241683.582161
EM: Round [243] log likelihood: -241683.581887
EM: Round [244] log likelihood: -241683.581617
EM: Round [245] log likelihood: -241683.581350
EM: Round [246] log likelihood: -241683.581086
EM: Round [247] log likelihood: -241683.580826
EM: Round [248] log likelihood: -241683.580570
EM: Round [249] log likelihood: -241683.580317
EM: Round [250] log likelihood: -241683.580067
EM: Round [251] log likelihood: -241683.579821
EM: Round [252] log likelihood: -241683.579577
EM: Round [253] log likelihood: -241683.579338
EM: Round [254] log likelihood: -241683.579101
EM: Round [255] log likelihood: -241683.578867
EM: Round [256] log likelihood: -241683.578637
EM: Round [257] log likelihood: -241683.578409
EM: Round [258] log likelihood: -241683.578185
EM: Round [259] log likelihood: -241683.577964
EM: Round [260] log likelihood: -241683.577745
EM: Round [261] log likelihood: -241683.577530
EM: Round [262] log likelihood: -241683.577317
EM: Round [263] log likelihood: -241683.577107
EM: Round [264] log likelihood: -241683.576900
EM: Round [265] log likelihood: -241683.576695
EM: Round [266] log likelihood: -241683.576494
EM: Round [267] log likelihood: -241683.576295
EM: Round [268] log likelihood: -241683.576098
EM: Round [269] log likelihood: -241683.575905
EM: Round [270] log likelihood: -241683.575713
EM: Round [271] log likelihood: -241683.575525
EM: Round [272] log likelihood: -241683.575338
EM: Round [273] log likelihood: -241683.575155
EM: Round [274] log likelihood: -241683.574973
EM: Round [275] log likelihood: -241683.574795
EM: Round [276] log likelihood: -241683.574618
EM: Round [277] log likelihood: -241683.574444
EM: Round [278] log likelihood: -241683.574272
EM: Round [279] log likelihood: -241683.574102
EM: Round [280] log likelihood: -241683.573935
EM: Round [281] log likelihood: -241683.573770
EM: Round [282] log likelihood: -241683.573607
EM: Round [283] log likelihood: -241683.573446
EM: Round [284] log likelihood: -241683.573287
EM: Round [285] log likelihood: -241683.573131
EM: Round [286] log likelihood: -241683.572976
EM: Round [287] log likelihood: -241683.572823
EM: Round [288] log likelihood: -241683.572673
EM: Round [289] log likelihood: -241683.572524
EM: Round [290] log likelihood: -241683.572378
EM: Round [291] log likelihood: -241683.572233
EM: Round [292] log likelihood: -241683.572091
EM: Round [293] log likelihood: -241683.571950
EM: Round [294] log likelihood: -241683.571811
EM: Round [295] log likelihood: -241683.571674
EM: Round [296] log likelihood: -241683.571538
EM: Round [297] log likelihood: -241683.571405
EM: Round [298] log likelihood: -241683.571273
EM: Round [299] log likelihood: -241683.571143
EM: Round [300] log likelihood: -241683.571014
EM: Round [301] log likelihood: -241683.570888
EM: Round [302] log likelihood: -241683.570763
EM: Round [303] log likelihood: -241683.570639
EM: Round [304] log likelihood: -241683.570518
EM: Round [305] log likelihood: -241683.570397
EM: Round [306] log likelihood: -241683.570279
EM: Round [307] log likelihood: -241683.570162
EM: Round [308] log likelihood: -241683.570046
EM: Round [309] log likelihood: -241683.569933
EM: Round [310] log likelihood: -241683.569820
EM: Round [311] log likelihood: -241683.569709
EM: Round [312] log likelihood: -241683.569600
EM: Round [313] log likelihood: -241683.569492
EM: Round [314] log likelihood: -241683.569385
EM: Round [315] log likelihood: -241683.569280
EM: Round [316] log likelihood: -241683.569176
EM: Round [317] log likelihood: -241683.569073
EM: Round [318] log likelihood: -241683.568972
EM: Round [319] log likelihood: -241683.568872
EM: Stopping iterations at round 319 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 221517982 > /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir > /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir --annotate /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir
-done, see /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 1795, filtered: 11666)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.HhG37byncT/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.HhG37byncT/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000282458.1]
WARNING, no entry stored in dbm for [ENSG00000234769.7]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000268081.1]
WARNING, no entry stored in dbm for [ENSG00000230559.1]
WARNING, no entry stored in dbm for [ENSG00000225661.7]
WARNING, no entry stored in dbm for [ENSG00000139239.7]
WARNING, no entry stored in dbm for [ENSG00000204622.11]
WARNING, no entry stored in dbm for [ENSG00000235290.1]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000186704.9]
WARNING, no entry stored in dbm for [ENSG00000224609.8]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000270780.1]
WARNING, no entry stored in dbm for [ENSG00000251314.2]
WARNING, no entry stored in dbm for [ENSG00000277977.1]
WARNING, no entry stored in dbm for [ENSG00000284747.1]
WARNING, no entry stored in dbm for [ENSG00000240401.9]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000213498.3]
WARNING, no entry stored in dbm for [ENSG00000204832.10]
WARNING, no entry stored in dbm for [ENSG00000249348.1]
WARNING, no entry stored in dbm for [ENSG00000231760.5]
WARNING, no entry stored in dbm for [ENSG00000267414.1]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000287411.1]
WARNING, no entry stored in dbm for [ENSG00000257074.3]
WARNING, no entry stored in dbm for [ENSG00000241030.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000265735.2]
WARNING, no entry stored in dbm for [ENSG00000263740.2]
WARNING, no entry stored in dbm for [ENSG00000276168.1]
WARNING, no entry stored in dbm for [ENSG00000123965.13]
WARNING, no entry stored in dbm for [ENSG00000286830.1]
WARNING, no entry stored in dbm for [ENSG00000181577.16]
WARNING, no entry stored in dbm for [ENSG00000249752.1]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000287624.1]
WARNING, no entry stored in dbm for [ENSG00000270094.1]
WARNING, no entry stored in dbm for [ENSG00000266504.1]
WARNING, no entry stored in dbm for [ENSG00000236405.1]
WARNING, no entry stored in dbm for [ENSG00000229891.2]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000227733.10]
WARNING, no entry stored in dbm for [ENSG00000233299.1]
WARNING, no entry stored in dbm for [ENSG00000230630.5]
WARNING, no entry stored in dbm for [ENSG00000250827.1]
WARNING, no entry stored in dbm for [ENSG00000270025.2]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000229498.1]
WARNING, no entry stored in dbm for [ENSG00000282885.2]
WARNING, no entry stored in dbm for [ENSG00000225096.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000230779.1]
WARNING, no entry stored in dbm for [ENSG00000220685.3]
WARNING, no entry stored in dbm for [ENSG00000232528.3]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000254559.1]
WARNING, no entry stored in dbm for [ENSG00000254951.7]
WARNING, no entry stored in dbm for [ENSG00000267040.6]
WARNING, no entry stored in dbm for [ENSG00000254485.5]
WARNING, no entry stored in dbm for [ENSG00000261329.6]
WARNING, no entry stored in dbm for [ENSG00000186148.13]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000205485.13]
WARNING, no entry stored in dbm for [ENSG00000277977.1]
WARNING, no entry stored in dbm for [ENSG00000243715.1]
WARNING, no entry stored in dbm for [ENSG00000228303.1]
WARNING, no entry stored in dbm for [ENSG00000242779.7]
WARNING, no entry stored in dbm for [ENSG00000269516.6]
WARNING, no entry stored in dbm for [ENSG00000185986.12]
WARNING, no entry stored in dbm for [ENSG00000267419.2]
WARNING, no entry stored in dbm for [ENSG00000257159.1]
WARNING, no entry stored in dbm for [ENSG00000264345.2]
WARNING, no entry stored in dbm for [ENSG00000268658.5]
WARNING, no entry stored in dbm for [ENSG00000258561.2]
WARNING, no entry stored in dbm for [ENSG00000234420.7]
WARNING, no entry stored in dbm for [ENSG00000251003.9]
WARNING, no entry stored in dbm for [ENSG00000177410.13]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000286662.2]
WARNING, no entry stored in dbm for [ENSG00000259605.3]
WARNING, no entry stored in dbm for [ENSG00000241336.2]
WARNING, no entry stored in dbm for [ENSG00000230202.1]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000250903.9]
WARNING, no entry stored in dbm for [ENSG00000185596.16]
WARNING, no entry stored in dbm for [ENSG00000146556.14]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000219770.1]
WARNING, no entry stored in dbm for [ENSG00000249956.4]
WARNING, no entry stored in dbm for [ENSG00000250376.1]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000225022.1]
WARNING, no entry stored in dbm for [ENSG00000224188.1]
WARNING, no entry stored in dbm for [ENSG00000258893.1]
WARNING, no entry stored in dbm for [ENSG00000242641.6]
WARNING, no entry stored in dbm for [ENSG00000215105.4]
WARNING, no entry stored in dbm for [ENSG00000288046.1]
WARNING, no entry stored in dbm for [ENSG00000250227.1]
WARNING, no entry stored in dbm for [ENSG00000232894.1]
WARNING, no entry stored in dbm for [ENSG00000287246.1]
WARNING, no entry stored in dbm for [ENSG00000232719.1]
WARNING, no entry stored in dbm for [ENSG00000231937.1]
WARNING, no entry stored in dbm for [ENSG00000237233.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000214881.4]
WARNING, no entry stored in dbm for [ENSG00000266904.6]
WARNING, no entry stored in dbm for [ENSG00000278530.4]
WARNING, no entry stored in dbm for [ENSG00000267253.1]
WARNING, no entry stored in dbm for [ENSG00000185596.16]
WARNING, no entry stored in dbm for [ENSG00000229436.1]
WARNING, no entry stored in dbm for [ENSG00000222328.1]
WARNING, no entry stored in dbm for [ENSG00000282502.1]
WARNING, no entry stored in dbm for [ENSG00000266904.6]
WARNING, no entry stored in dbm for [ENSG00000224966.4]
WARNING, no entry stored in dbm for [ENSG00000239883.8]
WARNING, no entry stored in dbm for [ENSG00000213856.3]
WARNING, no entry stored in dbm for [ENSG00000125462.19]
WARNING, no entry stored in dbm for [ENSG00000287498.1]
WARNING, no entry stored in dbm for [ENSG00000241383.2]
WARNING, no entry stored in dbm for [ENSG00000241316.8]
WARNING, no entry stored in dbm for [ENSG00000247708.8]
WARNING, no entry stored in dbm for [ENSG00000247708.8]
WARNING, no entry stored in dbm for [ENSG00000262879.6]
WARNING, no entry stored in dbm for [ENSG00000218586.3]
WARNING, no entry stored in dbm for [ENSG00000205583.13]
WARNING, no entry stored in dbm for [ENSG00000259642.2]
WARNING, no entry stored in dbm for [ENSG00000257773.1]
WARNING, no entry stored in dbm for [ENSG00000265261.1]
WARNING, no entry stored in dbm for [ENSG00000260276.2]
WARNING, no entry stored in dbm for [ENSG00000266835.6]
WARNING, no entry stored in dbm for [ENSG00000242808.10]
WARNING, no entry stored in dbm for [ENSG00000133624.13]
WARNING, no entry stored in dbm for [ENSG00000269893.8]
WARNING, no entry stored in dbm for [ENSG00000269893.8]
WARNING, no entry stored in dbm for [ENSG00000247157.7]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [ENSG00000271984.1]
WARNING, no entry stored in dbm for [ENSG00000215790.8]
WARNING, no entry stored in dbm for [ENSG00000238217.6]
WARNING, no entry stored in dbm for [ENSG00000263505.1]
WARNING, no entry stored in dbm for [ENSG00000242324.1]
WARNING, no entry stored in dbm for [ENSG00000171101.13]
WARNING, no entry stored in dbm for [ENSG00000262801.6]
WARNING, no entry stored in dbm for [ENSG00000224628.2]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000225538.2]
WARNING, no entry stored in dbm for [ENSG00000230223.8]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000230451.2]
WARNING, no entry stored in dbm for [ENSG00000239881.1]
WARNING, no entry stored in dbm for [ENSG00000244538.1]
WARNING, no entry stored in dbm for [ENSG00000243920.2]
WARNING, no entry stored in dbm for [ENSG00000196656.7]
WARNING, no entry stored in dbm for [ENSG00000200972.1]
WARNING, no entry stored in dbm for [ENSG00000243742.5]
WARNING, no entry stored in dbm for [ENSG00000237475.2]
WARNING, no entry stored in dbm for [ENSG00000241367.1]
WARNING, no entry stored in dbm for [ENSG00000213542.3]
WARNING, no entry stored in dbm for [ENSG00000184139.8]
WARNING, no entry stored in dbm for [ENSG00000211459.2]
WARNING, no entry stored in dbm for [ENSG00000235065.1]
WARNING, no entry stored in dbm for [ENSG00000244237.1]
WARNING, no entry stored in dbm for [ENSG00000226407.1]
WARNING, no entry stored in dbm for [ENSG00000239199.1]
WARNING, no entry stored in dbm for [ENSG00000243181.2]
WARNING, no entry stored in dbm for [ENSG00000201806.1]
WARNING, no entry stored in dbm for [ENSG00000286403.1]
WARNING, no entry stored in dbm for [ENSG00000227371.1]
WARNING, no entry stored in dbm for [ENSG00000229388.1]
WARNING, no entry stored in dbm for [ENSG00000272197.2]
WARNING, no entry stored in dbm for [ENSG00000263432.2]
WARNING, no entry stored in dbm for [ENSG00000239560.3]
WARNING, no entry stored in dbm for [ENSG00000264322.2]
WARNING, no entry stored in dbm for [ENSG00000239942.2]
WARNING, no entry stored in dbm for [ENSG00000242170.3]
WARNING, no entry stored in dbm for [ENSG00000240853.3]
WARNING, no entry stored in dbm for [ENSG00000263988.2]
WARNING, no entry stored in dbm for [ENSG00000223039.1]
WARNING, no entry stored in dbm for [ENSG00000222974.1]
WARNING, no entry stored in dbm for [ENSG00000201010.1]
WARNING, no entry stored in dbm for [ENSG00000222974.1]
WARNING, no entry stored in dbm for [ENSG00000199420.1]
WARNING, no entry stored in dbm for [ENSG00000222974.1]
WARNING, no entry stored in dbm for [ENSG00000231259.5]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000214970.8]
WARNING, no entry stored in dbm for [ENSG00000278147.1]
WARNING, no entry stored in dbm for [ENSG00000278147.1]
WARNING, no entry stored in dbm for [ENSG00000277448.1]
WARNING, no entry stored in dbm for [ENSG00000229531.6]
WARNING, no entry stored in dbm for [ENSG00000259905.7]
WARNING, no entry stored in dbm for [ENSG00000230629.2]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000248215.6]
WARNING, no entry stored in dbm for [ENSG00000204055.5]
WARNING, no entry stored in dbm for [ENSG00000277743.1]
WARNING, no entry stored in dbm for [ENSG00000215692.2]
WARNING, no entry stored in dbm for [ENSG00000257634.1]
WARNING, no entry stored in dbm for [ENSG00000099725.14]
WARNING, no entry stored in dbm for [ENSG00000272892.1]
WARNING, no entry stored in dbm for [ENSG00000214178.3]
WARNING, no entry stored in dbm for [ENSG00000266036.1]
WARNING, no entry stored in dbm for [ENSG00000228546.2]
WARNING, no entry stored in dbm for [ENSG00000250778.1]
WARNING, no entry stored in dbm for [ENSG00000274461.2]
WARNING, no entry stored in dbm for [ENSG00000250416.2]
WARNING, no entry stored in dbm for [ENSG00000240935.6]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000256751.6]
WARNING, no entry stored in dbm for [ENSG00000249307.7]
WARNING, no entry stored in dbm for [ENSG00000237352.4]
WARNING, no entry stored in dbm for [ENSG00000261003.1]
WARNING, no entry stored in dbm for [ENSG00000236394.2]
WARNING, no entry stored in dbm for [ENSG00000279558.1]
WARNING, no entry stored in dbm for [ENSG00000279558.1]
WARNING, no entry stored in dbm for [ENSG00000275110.1]
WARNING, no entry stored in dbm for [ENSG00000255875.2]
WARNING, no entry stored in dbm for [ENSG00000233997.5]
WARNING, no entry stored in dbm for [ENSG00000272559.1]
WARNING, no entry stored in dbm for [ENSG00000227445.1]
WARNING, no entry stored in dbm for [ENSG00000247556.6]
WARNING, no entry stored in dbm for [ENSG00000167920.10]
WARNING, no entry stored in dbm for [ENSG00000237187.9]
WARNING, no entry stored in dbm for [ENSG00000265593.1]
WARNING, no entry stored in dbm for [ENSG00000215086.2]
WARNING, no entry stored in dbm for [ENSG00000218227.3]
WARNING, no entry stored in dbm for [ENSG00000176700.20]
WARNING, no entry stored in dbm for [ENSG00000236859.7]
WARNING, no entry stored in dbm for [ENSG00000249167.2]
WARNING, no entry stored in dbm for [ENSG00000266365.1]
WARNING, no entry stored in dbm for [ENSG00000259948.2]
WARNING, no entry stored in dbm for [ENSG00000270231.4]
WARNING, no entry stored in dbm for [ENSG00000230163.1]
WARNING, no entry stored in dbm for [ENSG00000267934.1]
WARNING, no entry stored in dbm for [ENSG00000236682.2]
WARNING, no entry stored in dbm for [ENSG00000223396.4]
WARNING, no entry stored in dbm for [ENSG00000228323.2]
WARNING, no entry stored in dbm for [ENSG00000228323.2]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000250299.6]
WARNING, no entry stored in dbm for [ENSG00000154874.15]
WARNING, no entry stored in dbm for [ENSG00000233217.2]
WARNING, no entry stored in dbm for [ENSG00000224643.5]
WARNING, no entry stored in dbm for [ENSG00000260290.2]
WARNING, no entry stored in dbm for [ENSG00000230323.6]
WARNING, no entry stored in dbm for [ENSG00000236172.7]
WARNING, no entry stored in dbm for [ENSG00000277892.1]
WARNING, no entry stored in dbm for [ENSG00000228526.7]
WARNING, no entry stored in dbm for [ENSG00000271647.1]
WARNING, no entry stored in dbm for [ENSG00000270799.1]
WARNING, no entry stored in dbm for [ENSG00000198358.4]
WARNING, no entry stored in dbm for [ENSG00000280356.1]
WARNING, no entry stored in dbm for [ENSG00000237943.7]
WARNING, no entry stored in dbm for [ENSG00000285257.1]
WARNING, no entry stored in dbm for [ENSG00000287148.1]
WARNING, no entry stored in dbm for [ENSG00000226581.2]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000215241.4]
WARNING, no entry stored in dbm for [ENSG00000226711.7]
WARNING, no entry stored in dbm for [ENSG00000214039.9]
WARNING, no entry stored in dbm for [ENSG00000238042.5]
WARNING, no entry stored in dbm for [ENSG00000248132.3]
WARNING, no entry stored in dbm for [ENSG00000234766.2]
WARNING, no entry stored in dbm for [ENSG00000237491.10]
WARNING, no entry stored in dbm for [ENSG00000233304.7]
WARNING, no entry stored in dbm for [ENSG00000228262.10]
WARNING, no entry stored in dbm for [ENSG00000281404.2]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000224577.3]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000232973.13]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000234918.1]
WARNING, no entry stored in dbm for [ENSG00000249816.7]
WARNING, no entry stored in dbm for [ENSG00000240875.6]
WARNING, no entry stored in dbm for [ENSG00000258700.6]
WARNING, no entry stored in dbm for [ENSG00000231419.6]
WARNING, no entry stored in dbm for [ENSG00000278811.4]
WARNING, no entry stored in dbm for [ENSG00000197503.4]
WARNING, no entry stored in dbm for [ENSG00000236354.1]
WARNING, no entry stored in dbm for [ENSG00000224511.2]
WARNING, no entry stored in dbm for [ENSG00000278907.1]
WARNING, no entry stored in dbm for [ENSG00000226317.3]
WARNING, no entry stored in dbm for [ENSG00000133624.13]
WARNING, no entry stored in dbm for [ENSG00000214076.3]
WARNING, no entry stored in dbm for [ENSG00000240498.9]
WARNING, no entry stored in dbm for [ENSG00000214073.2]
WARNING, no entry stored in dbm for [ENSG00000233930.4]
WARNING, no entry stored in dbm for [ENSG00000286948.1]
WARNING, no entry stored in dbm for [ENSG00000229320.3]
WARNING, no entry stored in dbm for [ENSG00000223657.2]
WARNING, no entry stored in dbm for [ENSG00000214248.2]
WARNING, no entry stored in dbm for [ENSG00000285899.1]
WARNING, no entry stored in dbm for [ENSG00000185710.9]
WARNING, no entry stored in dbm for [ENSG00000234593.3]
WARNING, no entry stored in dbm for [ENSG00000271986.2]
WARNING, no entry stored in dbm for [ENSG00000269821.1]
WARNING, no entry stored in dbm for [ENSG00000270864.1]
WARNING, no entry stored in dbm for [ENSG00000261834.2]
WARNING, no entry stored in dbm for [ENSG00000233098.9]
WARNING, no entry stored in dbm for [ENSG00000255733.6]
WARNING, no entry stored in dbm for [ENSG00000184188.6]
WARNING, no entry stored in dbm for [ENSG00000260726.2]
WARNING, no entry stored in dbm for [ENSG00000251557.2]
WARNING, no entry stored in dbm for [ENSG00000213305.3]
WARNING, no entry stored in dbm for [ENSG00000228653.2]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000270494.1]
WARNING, no entry stored in dbm for [ENSG00000215283.3]
WARNING, no entry stored in dbm for [ENSG00000255391.1]
WARNING, no entry stored in dbm for [ENSG00000188681.11]
WARNING, no entry stored in dbm for [ENSG00000280809.4]
WARNING, no entry stored in dbm for [ENSG00000266290.1]
WARNING, no entry stored in dbm for [ENSG00000279066.1]
WARNING, no entry stored in dbm for [ENSG00000276550.4]
WARNING, no entry stored in dbm for [ENSG00000230630.5]
WARNING, no entry stored in dbm for [ENSG00000248690.8]
WARNING, no entry stored in dbm for [ENSG00000236467.8]
WARNING, no entry stored in dbm for [ENSG00000198237.8]
WARNING, no entry stored in dbm for [ENSG00000284671.1]
WARNING, no entry stored in dbm for [ENSG00000251250.3]
WARNING, no entry stored in dbm for [ENSG00000285847.2]
WARNING, no entry stored in dbm for [ENSG00000247708.8]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000263276.1]
WARNING, no entry stored in dbm for [ENSG00000233223.3]
WARNING, no entry stored in dbm for [ENSG00000267519.6]
WARNING, no entry stored in dbm for [ENSG00000255471.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000260459.2]
WARNING, no entry stored in dbm for [ENSG00000231646.6]
WARNING, no entry stored in dbm for [ENSG00000287129.1]
WARNING, no entry stored in dbm for [ENSG00000235020.5]
WARNING, no entry stored in dbm for [ENSG00000223421.1]
WARNING, no entry stored in dbm for [ENSG00000255052.5]
WARNING, no entry stored in dbm for [ENSG00000254016.3]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000248019.3]
WARNING, no entry stored in dbm for [ENSG00000251376.1]
WARNING, no entry stored in dbm for [ENSG00000200972.1]
WARNING, no entry stored in dbm for [ENSG00000185684.15]
WARNING, no entry stored in dbm for [ENSG00000234152.1]
WARNING, no entry stored in dbm for [ENSG00000213140.3]
WARNING, no entry stored in dbm for [ENSG00000254185.1]
WARNING, no entry stored in dbm for [ENSG00000199672.1]
WARNING, no entry stored in dbm for [ENSG00000228887.3]
WARNING, no entry stored in dbm for [ENSG00000229280.1]
WARNING, no entry stored in dbm for [ENSG00000250182.3]
WARNING, no entry stored in dbm for [ENSG00000278893.1]
WARNING, no entry stored in dbm for [ENSG00000267327.2]
WARNING, no entry stored in dbm for [ENSG00000270098.1]
WARNING, no entry stored in dbm for [ENSG00000259637.1]
WARNING, no entry stored in dbm for [ENSG00000206774.1]
WARNING, no entry stored in dbm for [ENSG00000234840.2]
WARNING, no entry stored in dbm for [ENSG00000265217.2]
WARNING, no entry stored in dbm for [ENSG00000260261.2]
WARNING, no entry stored in dbm for [ENSG00000258695.2]
WARNING, no entry stored in dbm for [ENSG00000214826.5]
WARNING, no entry stored in dbm for [ENSG00000154198.14]
WARNING, no entry stored in dbm for [ENSG00000154198.14]
WARNING, no entry stored in dbm for [ENSG00000233622.3]
WARNING, no entry stored in dbm for [ENSG00000227418.6]
WARNING, no entry stored in dbm for [ENSG00000225493.1]
WARNING, no entry stored in dbm for [ENSG00000287635.1]
WARNING, no entry stored in dbm for [ENSG00000280927.1]
WARNING, no entry stored in dbm for [ENSG00000245694.10]
WARNING, no entry stored in dbm for [ENSG00000220181.1]
WARNING, no entry stored in dbm for [ENSG00000244128.7]
WARNING, no entry stored in dbm for [ENSG00000282933.2]
WARNING, no entry stored in dbm for [ENSG00000231336.1]
WARNING, no entry stored in dbm for [ENSG00000259299.1]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000268362.6]
WARNING, no entry stored in dbm for [ENSG00000259755.1]
WARNING, no entry stored in dbm for [ENSG00000226662.2]
WARNING, no entry stored in dbm for [ENSG00000215908.10]
WARNING, no entry stored in dbm for [ENSG00000217733.2]
WARNING, no entry stored in dbm for [ENSG00000257042.1]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000267108.1]
WARNING, no entry stored in dbm for [ENSG00000224944.2]
WARNING, no entry stored in dbm for [ENSG00000272168.8]
WARNING, no entry stored in dbm for [ENSG00000205488.9]
WARNING, no entry stored in dbm for [ENSG00000288596.2]
WARNING, no entry stored in dbm for [ENSG00000285417.1]
WARNING, no entry stored in dbm for [ENSG00000286156.1]
WARNING, no entry stored in dbm for [ENSG00000256128.6]
WARNING, no entry stored in dbm for [ENSG00000215861.6]
WARNING, no entry stored in dbm for [ENSG00000278768.2]
WARNING, no entry stored in dbm for [ENSG00000286548.1]
WARNING, no entry stored in dbm for [ENSG00000225752.1]
WARNING, no entry stored in dbm for [ENSG00000257252.6]
WARNING, no entry stored in dbm for [ENSG00000244723.3]
WARNING, no entry stored in dbm for [ENSG00000206066.3]
WARNING, no entry stored in dbm for [ENSG00000287029.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000214455.4]
WARNING, no entry stored in dbm for [ENSG00000254590.1]
WARNING, no entry stored in dbm for [ENSG00000236235.1]
WARNING, no entry stored in dbm for [ENSG00000230133.2]
WARNING, no entry stored in dbm for [ENSG00000203489.3]
WARNING, no entry stored in dbm for [ENSG00000271581.1]
WARNING, no entry stored in dbm for [ENSG00000285643.1]
WARNING, no entry stored in dbm for [ENSG00000232576.2]
WARNING, no entry stored in dbm for [ENSG00000285634.2]
WARNING, no entry stored in dbm for [ENSG00000229422.2]
WARNING, no entry stored in dbm for [ENSG00000225096.3]
WARNING, no entry stored in dbm for [ENSG00000218872.1]
WARNING, no entry stored in dbm for [ENSG00000258448.1]
WARNING, no entry stored in dbm for [ENSG00000232499.2]
WARNING, no entry stored in dbm for [ENSG00000287398.1]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000235749.3]
WARNING, no entry stored in dbm for [ENSG00000232347.1]
WARNING, no entry stored in dbm for [ENSG00000258748.1]
WARNING, no entry stored in dbm for [ENSG00000197744.5]
WARNING, no entry stored in dbm for [ENSG00000230001.1]
WARNING, no entry stored in dbm for [ENSG00000230001.1]
WARNING, no entry stored in dbm for [ENSG00000258711.2]
WARNING, no entry stored in dbm for [ENSG00000227301.1]
WARNING, no entry stored in dbm for [ENSG00000246203.2]
WARNING, no entry stored in dbm for [ENSG00000230676.1]
WARNING, no entry stored in dbm for [ENSG00000272906.1]
WARNING, no entry stored in dbm for [ENSG00000285424.1]
WARNING, no entry stored in dbm for [ENSG00000233183.3]
WARNING, no entry stored in dbm for [ENSG00000176882.5]
WARNING, no entry stored in dbm for [ENSG00000258875.6]
WARNING, no entry stored in dbm for [ENSG00000286835.1]
WARNING, no entry stored in dbm for [ENSG00000225279.2]
WARNING, no entry stored in dbm for [ENSG00000285278.1]
WARNING, no entry stored in dbm for [ENSG00000286546.1]
WARNING, no entry stored in dbm for [ENSG00000279403.1]
WARNING, no entry stored in dbm for [ENSG00000285899.1]
WARNING, no entry stored in dbm for [ENSG00000224294.1]
WARNING, no entry stored in dbm for [ENSG00000286933.1]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000265018.6]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000274403.1]
WARNING, no entry stored in dbm for [ENSG00000241684.6]
WARNING, no entry stored in dbm for [ENSG00000277702.1]
WARNING, no entry stored in dbm for [ENSG00000277702.1]
WARNING, no entry stored in dbm for [ENSG00000277146.1]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000276805.2]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000263585.1]
WARNING, no entry stored in dbm for [ENSG00000261760.8]
WARNING, no entry stored in dbm for [ENSG00000240069.1]
WARNING, no entry stored in dbm for [ENSG00000247130.2]
WARNING, no entry stored in dbm for [ENSG00000180229.12]
WARNING, no entry stored in dbm for [ENSG00000261404.7]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000179755.3]
WARNING, no entry stored in dbm for [ENSG00000272710.2]
WARNING, no entry stored in dbm for [ENSG00000284605.1]
WARNING, no entry stored in dbm for [ENSG00000255367.3]
WARNING, no entry stored in dbm for [ENSG00000283345.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000288022.1]
WARNING, no entry stored in dbm for [ENSG00000248240.1]
WARNING, no entry stored in dbm for [ENSG00000267383.7]
WARNING, no entry stored in dbm for [ENSG00000249763.1]
WARNING, no entry stored in dbm for [ENSG00000226767.1]
WARNING, no entry stored in dbm for [ENSG00000250410.1]
WARNING, no entry stored in dbm for [ENSG00000263271.1]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000227038.3]
WARNING, no entry stored in dbm for [ENSG00000239572.3]
WARNING, no entry stored in dbm for [ENSG00000238273.3]
WARNING, no entry stored in dbm for [ENSG00000277332.1]
WARNING, no entry stored in dbm for [ENSG00000277332.1]
WARNING, no entry stored in dbm for [ENSG00000197149.5]
WARNING, no entry stored in dbm for [ENSG00000239920.2]
WARNING, no entry stored in dbm for [ENSG00000282375.1]
WARNING, no entry stored in dbm for [ENSG00000228303.1]
WARNING, no entry stored in dbm for [ENSG00000287971.1]
WARNING, no entry stored in dbm for [ENSG00000244468.1]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000286895.1]
WARNING, no entry stored in dbm for [ENSG00000288075.1]
WARNING, no entry stored in dbm for [ENSG00000178636.8]
WARNING, no entry stored in dbm for [ENSG00000247345.2]
WARNING, no entry stored in dbm for [ENSG00000205976.4]
WARNING, no entry stored in dbm for [ENSG00000279555.1]
WARNING, no entry stored in dbm for [ENSG00000265936.1]
WARNING, no entry stored in dbm for [ENSG00000214259.3]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000237666.2]
WARNING, no entry stored in dbm for [ENSG00000266208.1]
WARNING, no entry stored in dbm for [ENSG00000288663.1]
WARNING, no entry stored in dbm for [ENSG00000287789.1]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000223812.8]
WARNING, no entry stored in dbm for [ENSG00000231359.3]
WARNING, no entry stored in dbm for [ENSG00000213942.3]
WARNING, no entry stored in dbm for [ENSG00000259945.1]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000285600.1]
WARNING, no entry stored in dbm for [ENSG00000267601.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000251079.6]
WARNING, no entry stored in dbm for [ENSG00000253574.5]
WARNING, no entry stored in dbm for [ENSG00000186019.11]
WARNING, no entry stored in dbm for [ENSG00000287448.1]
WARNING, no entry stored in dbm for [ENSG00000286307.1]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000286449.1]
WARNING, no entry stored in dbm for [ENSG00000287052.1]
WARNING, no entry stored in dbm for [ENSG00000285587.1]
WARNING, no entry stored in dbm for [ENSG00000203643.3]
WARNING, no entry stored in dbm for [ENSG00000260409.1]
WARNING, no entry stored in dbm for [ENSG00000259383.1]
WARNING, no entry stored in dbm for [ENSG00000240401.9]
WARNING, no entry stored in dbm for [ENSG00000274184.1]
WARNING, no entry stored in dbm for [ENSG00000268573.1]
WARNING, no entry stored in dbm for [ENSG00000284490.1]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000255106.1]
WARNING, no entry stored in dbm for [ENSG00000241741.1]
WARNING, no entry stored in dbm for [ENSG00000287229.1]
WARNING, no entry stored in dbm for [ENSG00000286797.1]
WARNING, no entry stored in dbm for [ENSG00000284671.1]
WARNING, no entry stored in dbm for [ENSG00000284649.1]
WARNING, no entry stored in dbm for [ENSG00000284671.1]
WARNING, no entry stored in dbm for [ENSG00000230189.7]
WARNING, no entry stored in dbm for [ENSG00000244510.2]
WARNING, no entry stored in dbm for [ENSG00000273015.2]
WARNING, no entry stored in dbm for [ENSG00000226472.8]
WARNING, no entry stored in dbm for [ENSG00000286739.1]
WARNING, no entry stored in dbm for [ENSG00000275665.1]
WARNING, no entry stored in dbm for [ENSG00000284380.1]
WARNING, no entry stored in dbm for [ENSG00000269745.1]
WARNING, no entry stored in dbm for [ENSG00000218227.3]
WARNING, no entry stored in dbm for [ENSG00000267606.1]
WARNING, no entry stored in dbm for [ENSG00000276232.1]
WARNING, no entry stored in dbm for [ENSG00000230979.3]
WARNING, no entry stored in dbm for [ENSG00000266933.2]
WARNING, no entry stored in dbm for [ENSG00000214719.13]
WARNING, no entry stored in dbm for [ENSG00000271500.1]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000241057.2]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000228204.2]
WARNING, no entry stored in dbm for [ENSG00000277283.1]
WARNING, no entry stored in dbm for [ENSG00000228113.7]
WARNING, no entry stored in dbm for [ENSG00000180581.7]
WARNING, no entry stored in dbm for [ENSG00000261538.1]
WARNING, no entry stored in dbm for [ENSG00000231749.3]
WARNING, no entry stored in dbm for [ENSG00000231749.3]
WARNING, no entry stored in dbm for [ENSG00000287858.1]


	* STAR-Fusion complete.  See output: /tmp/nxf.HhG37byncT/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)