File Info

Filename
aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/bc3a232737b9a17e6b9d3033c50af5/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:50:24
                             Started mapping on |	Jun 08 07:53:09
                                    Finished on |	Jun 08 08:28:44
       Mapping speed, Million of reads per hour |	371.59

                          Number of input reads |	220370873
                      Average input read length |	251
                                    UNIQUE READS:
                   Uniquely mapped reads number |	207381540
                        Uniquely mapped reads % |	94.11%
                          Average mapped length |	251.36
                       Number of splices: Total |	227168781
            Number of splices: Annotated (sjdb) |	224404581
                       Number of splices: GT/AG |	224875054
                       Number of splices: GC/AG |	1619914
                       Number of splices: AT/AC |	203083
               Number of splices: Non-canonical |	470730
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.06
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.66
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9441633
             % of reads mapped to multiple loci |	4.28%
        Number of reads mapped to too many loci |	216886
             % of reads mapped to too many loci |	0.10%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	322441
       % of reads unmapped: too many mismatches |	0.15%
            Number of reads unmapped: too short |	1532410
                 % of reads unmapped: too short |	0.70%
                Number of reads unmapped: other |	134301
                     % of reads unmapped: other |	0.06%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2480384
                            % of chimeric reads |	1.13%