File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/b0d26afeee259f50dc33446323abf6/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-0992e4-R1_A23WJ53LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/5c36837c638fc793025d7601003bd6/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/b0d26afeee259f50dc33446323abf6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/b0d26afeee259f50dc33446323abf6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/f24ca14c9bc5351d9befb2fab27def/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 363744523
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-0992e4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	363744523
Known Splicing Events:	360462226
Partial Novel Splicing Events:	1649555
Novel Splicing Events:	1507935
Filtered Splicing Events:	124807

Total splicing  Junctions:	638607
Known Splicing Junctions:	289515
Partial Novel Splicing Junctions:	175152
Novel Splicing Junctions:	173940

===================================================================
Create BED file ...
Create Interact file ...