File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/eb48b1efc47be198e6915eaa32dd3d/.command.log
Size
2.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/eb48b1efc47be198e6915eaa32dd3d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/eb48b1efc47be198e6915eaa32dd3d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/a4e58d46936215df7c5faf24c27d90/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/e1209cb7ee590b72329e61b2cde527/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
OSBPL10--GADL1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
STX16--NPEPL1
arriba
STON1--GTF2A1L
arriba
TVP23C--CDRT4
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/7 [00:00<?, ?it/s]
Processing OSBPL10--GADL1:   0%|          | 0/7 [00:00<?, ?it/s]
Processing OSBPL10--GADL1:  14%|█▍        | 1/7 [00:00<00:00,  9.09it/s]
Processing TLK2P1--AC110079.1:  14%|█▍        | 1/7 [00:00<00:00,  9.09it/s]
Processing TLK2P1--AC110079.1:  29%|██▊       | 2/7 [00:00<00:00,  9.38it/s]
Processing TLK2--AC240565.1:  29%|██▊       | 2/7 [00:00<00:00,  9.38it/s]  
Processing TLK2--AC240565.1:  43%|████▎     | 3/7 [00:00<00:00,  9.48it/s]
Processing STX16--NPEPL1:  43%|████▎     | 3/7 [00:00<00:00,  9.48it/s]   
Processing STX16--NPEPL1:  57%|█████▋    | 4/7 [00:00<00:00,  9.52it/s]
Processing STON1--GTF2A1L:  57%|█████▋    | 4/7 [00:00<00:00,  9.52it/s]
Processing STON1--GTF2A1L:  71%|███████▏  | 5/7 [00:00<00:00,  9.52it/s]
Processing TVP23C--CDRT4:  71%|███████▏  | 5/7 [00:00<00:00,  9.52it/s] 
Processing TVP23C--CDRT4:  86%|████████▌ | 6/7 [00:00<00:00,  9.54it/s]
Processing KLRC4--KLRK1:  86%|████████▌ | 6/7 [00:00<00:00,  9.54it/s] 
Processing KLRC4--KLRK1: 100%|██████████| 7/7 [00:00<00:00,  9.55it/s]
Processing KLRC4--KLRK1: 100%|██████████| 7/7 [00:00<00:00,  9.50it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory