.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-19e09e-R1_A23WJ53LT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/186f8541c294de3e3e6f2edbe092d1/.command.log
Size: 5.4 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-19e09e-R1_A23WJ53LT4_1)
Attempt
Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/dd0fbc2867aacde12be38890c56781/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/186f8541c294de3e3e6f2edbe092d1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/186f8541c294de3e3e6f2edbe092d1/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/c3c024c69396f27a33a29206911309/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

[32mRunning application...[0m
CX3CL1--RBPMS
starfusion
arriba
PCDHGA3--PCDHGA8
arriba
PCDHGA3--PCDHGA9
arriba
PCDHGA3--PCDHGB6
arriba
PCDHGA3--PCDHGA10
arriba
PCDHGA3--PCDHGB7
arriba
PCDHGA3--PCDHGA11
arriba
PCDHGA3--PCDHGA12
arriba
PCDHGA3--PCDHGC3
arriba
PCDHGA3--PCDHGC4
arriba
PCDHGA3--PCDHGC5
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
TVP23C--CDRT4
arriba

  0%|          | 0/22 [00:00<?, ?it/s]
Processing CX3CL1--RBPMS:   0%|          | 0/22 [00:00<?, ?it/s]
Processing CX3CL1--RBPMS:   5%|▍         | 1/22 [00:00<00:02,  9.23it/s]
Processing PCDHGA3--PCDHGA8:   5%|▍         | 1/22 [00:00<00:02,  9.23it/s]
Processing PCDHGA3--PCDHGA8:   9%|▉         | 2/22 [00:00<00:02,  9.46it/s]
Processing PCDHGA3--PCDHGA9:   9%|▉         | 2/22 [00:00<00:02,  9.46it/s]
Processing PCDHGA3--PCDHGA9:  14%|█▎        | 3/22 [00:00<00:01,  9.54it/s]
Processing PCDHGA3--PCDHGB6:  14%|█▎        | 3/22 [00:00<00:01,  9.54it/s]
Processing PCDHGA3--PCDHGB6:  18%|█▊        | 4/22 [00:00<00:01,  9.57it/s]
Processing PCDHGA3--PCDHGA10:  18%|█▊        | 4/22 [00:00<00:01,  9.57it/s]
Processing PCDHGA3--PCDHGA10:  23%|██▎       | 5/22 [00:00<00:01,  9.60it/s]
Processing PCDHGA3--PCDHGB7:  23%|██▎       | 5/22 [00:00<00:01,  9.60it/s] 
Processing PCDHGA3--PCDHGB7:  27%|██▋       | 6/22 [00:00<00:01,  9.61it/s]
Processing PCDHGA3--PCDHGA11:  27%|██▋       | 6/22 [00:00<00:01,  9.61it/s]
Processing PCDHGA3--PCDHGA11:  32%|███▏      | 7/22 [00:00<00:01,  9.62it/s]
Processing PCDHGA3--PCDHGA12:  32%|███▏      | 7/22 [00:00<00:01,  9.62it/s]
Processing PCDHGA3--PCDHGA12:  36%|███▋      | 8/22 [00:00<00:01,  9.63it/s]
Processing PCDHGA3--PCDHGC3:  36%|███▋      | 8/22 [00:00<00:01,  9.63it/s] 
Processing PCDHGA3--PCDHGC3:  41%|████      | 9/22 [00:00<00:01,  9.63it/s]
Processing PCDHGA3--PCDHGC4:  41%|████      | 9/22 [00:00<00:01,  9.63it/s]
Processing PCDHGA3--PCDHGC4:  45%|████▌     | 10/22 [00:01<00:01,  9.64it/s]
Processing PCDHGA3--PCDHGC5:  45%|████▌     | 10/22 [00:01<00:01,  9.64it/s]
Processing PCDHGA3--PCDHGC5:  50%|█████     | 11/22 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC5:  50%|█████     | 11/22 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC5:  55%|█████▍    | 12/22 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC4:  55%|█████▍    | 12/22 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC4:  59%|█████▉    | 13/22 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  59%|█████▉    | 13/22 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  64%|██████▎   | 14/22 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  64%|██████▎   | 14/22 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  68%|██████▊   | 15/22 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  68%|██████▊   | 15/22 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  73%|███████▎  | 16/22 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  73%|███████▎  | 16/22 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  77%|███████▋  | 17/22 [00:01<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGB7:  77%|███████▋  | 17/22 [00:01<00:00,  9.63it/s] 
Processing PCDHGB2--PCDHGB7:  82%|████████▏ | 18/22 [00:01<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  82%|████████▏ | 18/22 [00:01<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  86%|████████▋ | 19/22 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  86%|████████▋ | 19/22 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  91%|█████████ | 20/22 [00:02<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA9:  91%|█████████ | 20/22 [00:02<00:00,  9.63it/s] 
Processing PCDHGB2--PCDHGA9:  95%|█████████▌| 21/22 [00:02<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  95%|█████████▌| 21/22 [00:02<00:00,  9.62it/s]   
Processing TVP23C--CDRT4: 100%|██████████| 22/22 [00:02<00:00,  9.61it/s]
Processing TVP23C--CDRT4: 100%|██████████| 22/22 [00:02<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory