Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/fadb7d9f9f7a1a2279e4b732a6186f/aih-tih-sc-284856-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/37aea75a0314c8503274f1132b3d8e/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/37aea75a0314c8503274f1132b3d8e/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
paired = 68633037
unpaired = 1111567
MERGED PAIRED END READS = 68633037
MATES PROCESSED = 138377641
TOTAL READS = 69744604
DISTINCT READS = 4.89886e+07
DISTINCT COUNTS = 346
MAX COUNT = 198958
COUNTS OF 1 = 3.6651e+07
MAX TERMS = 100
OBSERVED COUNTS (198959)
1 36651042
2 8484587
3 2326084
4 776577
5 317051
6 152534
7 83371
8 50638
9 32965
10 22625
11 16455
12 12277
13 9628
14 7284
15 6003
16 4897
17 3909
18 3248
19 2948
20 2446
21 1959
22 1734
23 1508
24 1428
25 1161
26 1104
27 901
28 863
29 820
30 678
31 651
32 586
33 509
34 477
35 422
36 406
37 374
38 341
39 324
40 296
41 277
42 252
43 257
44 226
45 202
46 195
47 187
48 177
49 156
50 163
51 125
52 133
53 117
54 133
55 110
56 90
57 81
58 76
59 88
60 91
61 80
62 79
63 73
64 64
65 71
66 57
67 56
68 52
69 53
70 60
71 44
72 49
73 47
74 36
75 44
76 34
77 36
78 35
79 42
80 24
81 34
82 31
83 35
84 29
85 38
86 25
87 29
88 24
89 28
90 20
91 20
92 20
93 19
94 24
95 19
96 12
97 17
98 23
99 12
100 20
101 15
102 11
103 14
104 13
105 12
106 22
107 16
108 8
109 16
110 9
111 12
112 14
113 9
114 6
115 17
116 16
117 13
118 9
119 14
120 7
121 13
122 6
123 9
124 11
125 9
126 12
127 8
128 4
129 6
130 6
131 7
132 13
133 6
134 3
135 5
136 14
137 7
138 7
139 5
140 8
141 6
142 5
143 3
144 3
145 4
146 3
147 4
148 7
149 8
150 5
151 5
152 5
153 7
154 1
155 4
156 2
157 1
158 8
159 2
160 6
161 5
162 2
163 3
164 5
165 5
166 6
167 3
168 3
169 4
170 4
171 4
172 3
173 1
174 5
176 2
177 3
178 2
179 2
180 1
181 4
182 2
183 1
184 2
185 4
186 3
187 3
189 5
190 3
191 1
192 1
193 4
194 2
195 3
196 2
197 4
198 3
199 3
200 6
202 3
203 1
204 1
205 1
206 2
207 4
208 4
209 2
210 6
211 1
212 2
213 3
214 2
215 1
216 1
217 1
218 1
219 4
220 1
221 1
223 4
224 3
225 1
226 3
227 2
228 1
229 1
231 1
232 1
234 1
236 2
237 3
238 3
239 2
240 1
241 2
242 3
243 2
244 2
245 1
246 1
247 1
248 1
250 2
251 2
253 1
256 1
257 2
258 1
260 1
261 1
263 1
265 1
266 1
267 1
268 1
269 1
270 1
271 1
272 1
273 1
274 1
275 2
279 1
281 1
282 1
283 2
284 1
285 1
286 2
287 2
289 2
291 1
292 1
293 2
297 1
299 1
301 1
305 2
306 1
307 1
308 1
309 1
310 1
312 1
313 1
314 1
316 1
318 1
319 1
321 1
322 1
323 1
326 1
327 2
328 2
336 1
338 1
344 1
346 1
350 2
354 2
356 1
364 1
366 1
377 1
380 1
386 1
392 1
397 1
400 1
403 1
406 1
410 1
419 1
420 1
423 1
424 1
430 1
431 1
436 1
437 1
445 1
448 2
449 1
450 2
454 1
467 1
479 1
495 2
513 1
525 1
526 1
540 1
541 1
580 1
664 1
759 1
817 1
835 1
860 1
949 1
1171 1
1749 1
1843 1
1844 1
7050 1
198958 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.............._........_......._....._...._._...........................
._..._......_........................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]