File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/78b9c23c2aad8678ae881be146a9dd/.command.log
Size
742 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (FFPE_HD789_01_RNA_13_A23WJ53LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/fe104db6b70f950e572c54a303ed8f/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/78b9c23c2aad8678ae881be146a9dd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/78b9c23c2aad8678ae881be146a9dd/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  FFPE_HD789_01_RNA_13_A23WJ53LT4_1: vaf_p90=0.703761 -> CONTAMINATED (~63.7%)

Output saved to: FFPE_HD789_01_RNA_13_A23WJ53LT4_1.predictions.csv
Summary: 1/1 samples flagged as contaminated