Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/a34f9a4d1b3e70e53d5628f699bcac/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/cfb3dfa567fd7b66a074eb35a02271/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/a34f9a4d1b3e70e53d5628f699bcac/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/e03d778989310adaea80d7dc46c6ab/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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