Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/cf7ca25b9363e91f04a9d215a202ee/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/b5a2445c96f2f774c526539a252057/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/020295a311c9fa30f6f9d4e5656db7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/020295a311c9fa30f6f9d4e5656db7/.command.run
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory