Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 4865
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 4865
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:4865
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
ACTBP6--ACTB HAVANA gene 6203 10583 . + . FI_gene_label "ACTB^ENSG00000075624.17" ; ID "ACTBP6--ACTB^ACTB^ENSG00000075624.17" ; exon_id "ENSE00003542066.1" ; exon_number 3 ; gene_id "ACTBP6--ACTB^ACTB^ENSG00000075624.17" ; gene_name ACTB ; gene_type protein_coding ; havana_gene "OTTHUMG00000023268.12" ; havana_transcript "OTTHUMT00000324028.2" ; hgnc_id "HGNC:132" ; level 2 ; orig_coord_info "chr7,5529535,5529657,-" ; protein_id "ENSP00000401032.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF dotter_confirmed ; transcript_id "ACTBP6--ACTB^ENST00000414620.1" ; transcript_name "ACTB-201" ; transcript_support_level 4 ; transcript_type protein_coding
ACTBP6--ACTB HAVANA mRNA 6203 10583 . + . FI_gene_label "ACTB^ENSG00000075624.17" ; ID "ACTBP6--ACTB^ENST00000414620.1" ; Parent "ACTBP6--ACTB^ACTB^ENSG00000075624.17" ; exon_id "ENSE00003542066.1" ; exon_number 3 ; gene_id "ACTBP6--ACTB^ACTB^ENSG00000075624.17" ; gene_name ACTB ; gene_type protein_coding ; havana_gene "OTTHUMG00000023268.12" ; havana_transcript "OTTHUMT00000324028.2" ; hgnc_id "HGNC:132" ; level 2 ; orig_coord_info "chr7,5529535,5529657,-" ; protein_id "ENSP00000401032.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF dotter_confirmed ; transcript_id "ACTBP6--ACTB^ENST00000414620.1" ; transcript_name "ACTB-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
AP000347.1--IGLL1 HAVANA gene 21739 24573 . + . FI_gene_label "IGLL1^ENSG00000128322.7" ; ID "AP000347.1--IGLL1^IGLL1^ENSG00000128322.7" ; ccdsid "CCDS13810.1" ; exon_id "ENSE00001912592.1" ; exon_number 1 ; gene_id "AP000347.1--IGLL1^IGLL1^ENSG00000128322.7" ; gene_name IGLL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150673.3" ; havana_transcript "OTTHUMT00000319568.1" ; hgnc_id "HGNC:5870" ; level 2 ; orig_coord_info "chr22,23579985,23580190,-" ; protein_id "ENSP00000249053.3" ; tag basic CCDS ; transcript_id "AP000347.1--IGLL1^ENST00000249053.3" ; transcript_name "IGLL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AP000347.1--IGLL1 HAVANA mRNA 21739 24573 . + . FI_gene_label "IGLL1^ENSG00000128322.7" ; ID "AP000347.1--IGLL1^ENST00000249053.3" ; Parent "AP000347.1--IGLL1^IGLL1^ENSG00000128322.7" ; ccdsid "CCDS13810.1" ; exon_id "ENSE00001912592.1" ; exon_number 1 ; gene_id "AP000347.1--IGLL1^IGLL1^ENSG00000128322.7" ; gene_name IGLL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150673.3" ; havana_transcript "OTTHUMT00000319568.1" ; hgnc_id "HGNC:5870" ; level 2 ; orig_coord_info "chr22,23579985,23580190,-" ; protein_id "ENSP00000249053.3" ; tag basic CCDS ; transcript_id "AP000347.1--IGLL1^ENST00000249053.3" ; transcript_name "IGLL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAIAP2L2--ACO2 HAVANA gene 18308 43241 . + . FI_gene_label "ACO2^ENSG00000100412.17" ; ID "BAIAP2L2--ACO2^ACO2^ENSG00000100412.17" ; ccdsid "CCDS14017.1" ; exon_id "ENSE00001340994.4" ; exon_number 1 ; gene_id "BAIAP2L2--ACO2^ACO2^ENSG00000100412.17" ; gene_name ACO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030544.4" ; havana_transcript "OTTHUMT00000259151.2" ; hgnc_id "HGNC:118" ; level 2 ; orig_coord_info "chr22,41469147,41469182,+" ; protein_id "ENSP00000216254.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAIAP2L2--ACO2^ENST00000216254.9" ; transcript_name "ACO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAIAP2L2--ACO2 HAVANA mRNA 18308 43241 . + . FI_gene_label "ACO2^ENSG00000100412.17" ; ID "BAIAP2L2--ACO2^ENST00000216254.9" ; Parent "BAIAP2L2--ACO2^ACO2^ENSG00000100412.17" ; ccdsid "CCDS14017.1" ; exon_id "ENSE00001340994.4" ; exon_number 1 ; gene_id "BAIAP2L2--ACO2^ACO2^ENSG00000100412.17" ; gene_name ACO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030544.4" ; havana_transcript "OTTHUMT00000259151.2" ; hgnc_id "HGNC:118" ; level 2 ; orig_coord_info "chr22,41469147,41469182,+" ; protein_id "ENSP00000216254.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAIAP2L2--ACO2^ENST00000216254.9" ; transcript_name "ACO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAIAP2L2--ACO2 HAVANA gene 5599 14093 . + . FI_gene_label "BAIAP2L2^ENSG00000128298.18" ; ID "BAIAP2L2--ACO2^BAIAP2L2^ENSG00000128298.18" ; exon_id "ENSE00003912215.1" ; exon_number 1 ; gene_id "BAIAP2L2--ACO2^BAIAP2L2^ENSG00000128298.18" ; gene_name BAIAP2L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151197.5" ; hgnc_id "HGNC:26203" ; level 2 ; orig_coord_info "chr22,38097691,38097782,-" ; protein_id "ENSP00000328876.7" ; tag mRNA_start_NF cds_start_NF inferred_transcript_model RNA_Seq_supported_only ; transcript_id "BAIAP2L2--ACO2^ENST00000332536.10" ; transcript_name "BAIAP2L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
BAIAP2L2--ACO2 HAVANA mRNA 5599 14093 . + . FI_gene_label "BAIAP2L2^ENSG00000128298.18" ; ID "BAIAP2L2--ACO2^ENST00000332536.10" ; Parent "BAIAP2L2--ACO2^BAIAP2L2^ENSG00000128298.18" ; exon_id "ENSE00003912215.1" ; exon_number 1 ; gene_id "BAIAP2L2--ACO2^BAIAP2L2^ENSG00000128298.18" ; gene_name BAIAP2L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151197.5" ; hgnc_id "HGNC:26203" ; level 2 ; orig_coord_info "chr22,38097691,38097782,-" ; protein_id "ENSP00000328876.7" ; tag mRNA_start_NF cds_start_NF inferred_transcript_model RNA_Seq_supported_only ; transcript_id "BAIAP2L2--ACO2^ENST00000332536.10" ; transcript_name "BAIAP2L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BAIAP2L2--AL008582.1 HAVANA gene 5599 14093 . + . FI_gene_label "BAIAP2L2^ENSG00000128298.18" ; ID "BAIAP2L2--AL008582.1^BAIAP2L2^ENSG00000128298.18" ; exon_id "ENSE00003912215.1" ; exon_number 1 ; gene_id "BAIAP2L2--AL008582.1^BAIAP2L2^ENSG00000128298.18" ; gene_name BAIAP2L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151197.5" ; hgnc_id "HGNC:26203" ; level 2 ; orig_coord_info "chr22,38097691,38097782,-" ; protein_id "ENSP00000328876.7" ; tag mRNA_start_NF cds_start_NF inferred_transcript_model RNA_Seq_supported_only ; transcript_id "BAIAP2L2--AL008582.1^ENST00000332536.10" ; transcript_name "BAIAP2L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
BAIAP2L2--AL008582.1 HAVANA mRNA 5599 14093 . + . FI_gene_label "BAIAP2L2^ENSG00000128298.18" ; ID "BAIAP2L2--AL008582.1^ENST00000332536.10" ; Parent "BAIAP2L2--AL008582.1^BAIAP2L2^ENSG00000128298.18" ; exon_id "ENSE00003912215.1" ; exon_number 1 ; gene_id "BAIAP2L2--AL008582.1^BAIAP2L2^ENSG00000128298.18" ; gene_name BAIAP2L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151197.5" ; hgnc_id "HGNC:26203" ; level 2 ; orig_coord_info "chr22,38097691,38097782,-" ; protein_id "ENSP00000328876.7" ; tag mRNA_start_NF cds_start_NF inferred_transcript_model RNA_Seq_supported_only ; transcript_id "BAIAP2L2--AL008582.1^ENST00000332536.10" ; transcript_name "BAIAP2L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BAIAP2L2--TEF HAVANA gene 18361 26528 . + . FI_gene_label "TEF^ENSG00000167074.15" ; ID "BAIAP2L2--TEF^TEF^ENSG00000167074.15" ; ccdsid "CCDS14014.1" ; exon_id "ENSE00001860832.2" ; exon_number 1 ; gene_id "BAIAP2L2--TEF^TEF^ENSG00000167074.15" ; gene_name TEF ; gene_type protein_coding ; havana_gene "OTTHUMG00000150968.3" ; havana_transcript "OTTHUMT00000320692.2" ; hgnc_id "HGNC:11722" ; level 2 ; orig_coord_info "chr22,41382045,41382201,+" ; protein_id "ENSP00000266304.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAIAP2L2--TEF^ENST00000266304.9" ; transcript_name "TEF-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAIAP2L2--TEF HAVANA mRNA 18361 26528 . + . FI_gene_label "TEF^ENSG00000167074.15" ; ID "BAIAP2L2--TEF^ENST00000266304.9" ; Parent "BAIAP2L2--TEF^TEF^ENSG00000167074.15" ; ccdsid "CCDS14014.1" ; exon_id "ENSE00001860832.2" ; exon_number 1 ; gene_id "BAIAP2L2--TEF^TEF^ENSG00000167074.15" ; gene_name TEF ; gene_type protein_coding ; havana_gene "OTTHUMG00000150968.3" ; havana_transcript "OTTHUMT00000320692.2" ; hgnc_id "HGNC:11722" ; level 2 ; orig_coord_info "chr22,41382045,41382201,+" ; protein_id "ENSP00000266304.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAIAP2L2--TEF^ENST00000266304.9" ; transcript_name "TEF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAIAP2L2--TEF HAVANA gene 5599 14093 . + . FI_gene_label "BAIAP2L2^ENSG00000128298.18" ; ID "BAIAP2L2--TEF^BAIAP2L2^ENSG00000128298.18" ; exon_id "ENSE00003912215.1" ; exon_number 1 ; gene_id "BAIAP2L2--TEF^BAIAP2L2^ENSG00000128298.18" ; gene_name BAIAP2L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151197.5" ; hgnc_id "HGNC:26203" ; level 2 ; orig_coord_info "chr22,38097691,38097782,-" ; protein_id "ENSP00000328876.7" ; tag mRNA_start_NF cds_start_NF inferred_transcript_model RNA_Seq_supported_only ; transcript_id "BAIAP2L2--TEF^ENST00000332536.10" ; transcript_name "BAIAP2L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
BAIAP2L2--TEF HAVANA mRNA 5599 14093 . + . FI_gene_label "BAIAP2L2^ENSG00000128298.18" ; ID "BAIAP2L2--TEF^ENST00000332536.10" ; Parent "BAIAP2L2--TEF^BAIAP2L2^ENSG00000128298.18" ; exon_id "ENSE00003912215.1" ; exon_number 1 ; gene_id "BAIAP2L2--TEF^BAIAP2L2^ENSG00000128298.18" ; gene_name BAIAP2L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151197.5" ; hgnc_id "HGNC:26203" ; level 2 ; orig_coord_info "chr22,38097691,38097782,-" ; protein_id "ENSP00000328876.7" ; tag mRNA_start_NF cds_start_NF inferred_transcript_model RNA_Seq_supported_only ; transcript_id "BAIAP2L2--TEF^ENST00000332536.10" ; transcript_name "BAIAP2L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCDC50--LINC00877 HAVANA gene 1310 19538 . + . FI_gene_label "CCDC50^ENSG00000152492.15" ; ID "CCDC50--LINC00877^CCDC50^ENSG00000152492.15" ; ccdsid "CCDS33912.1" ; exon_id "ENSE00001922047.2" ; exon_number 1 ; gene_id "CCDC50--LINC00877^CCDC50^ENSG00000152492.15" ; gene_name CCDC50 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156177.3" ; havana_transcript "OTTHUMT00000343316.3" ; hgnc_id "HGNC:18111" ; level 2 ; orig_coord_info "chr3,191329675,191329723,+" ; protein_id "ENSP00000376249.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC50--LINC00877^ENST00000392455.9" ; transcript_name "CCDC50-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC50--LINC00877 HAVANA mRNA 1310 19538 . + . FI_gene_label "CCDC50^ENSG00000152492.15" ; ID "CCDC50--LINC00877^ENST00000392455.9" ; Parent "CCDC50--LINC00877^CCDC50^ENSG00000152492.15" ; ccdsid "CCDS33912.1" ; exon_id "ENSE00001922047.2" ; exon_number 1 ; gene_id "CCDC50--LINC00877^CCDC50^ENSG00000152492.15" ; gene_name CCDC50 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156177.3" ; havana_transcript "OTTHUMT00000343316.3" ; hgnc_id "HGNC:18111" ; level 2 ; orig_coord_info "chr3,191329675,191329723,+" ; protein_id "ENSP00000376249.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC50--LINC00877^ENST00000392455.9" ; transcript_name "CCDC50-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC90B--PICALM HAVANA gene 1054 11143 . + . FI_gene_label "CCDC90B^ENSG00000137500.9" ; ID "CCDC90B--PICALM^CCDC90B^ENSG00000137500.9" ; exon_id "ENSE00002142151.1" ; exon_number 1 ; gene_id "CCDC90B--PICALM^CCDC90B^ENSG00000137500.9" ; gene_name CCDC90B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167078.2" ; havana_transcript "OTTHUMT00000392943.1" ; hgnc_id "HGNC:28108" ; level 2 ; orig_coord_info "chr11,83285873,83285972,-" ; protein_id "ENSP00000260054.4" ; transcript_id "CCDC90B--PICALM^ENST00000260054.8" ; transcript_name "CCDC90B-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
CCDC90B--PICALM HAVANA mRNA 1054 11143 . + . FI_gene_label "CCDC90B^ENSG00000137500.9" ; ID "CCDC90B--PICALM^ENST00000260054.8" ; Parent "CCDC90B--PICALM^CCDC90B^ENSG00000137500.9" ; exon_id "ENSE00002142151.1" ; exon_number 1 ; gene_id "CCDC90B--PICALM^CCDC90B^ENSG00000137500.9" ; gene_name CCDC90B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167078.2" ; havana_transcript "OTTHUMT00000392943.1" ; hgnc_id "HGNC:28108" ; level 2 ; orig_coord_info "chr11,83285873,83285972,-" ; protein_id "ENSP00000260054.4" ; transcript_id "CCDC90B--PICALM^ENST00000260054.8" ; transcript_name "CCDC90B-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
CCDC90B--PICALM HAVANA gene 17605 41315 . + . FI_gene_label "PICALM^ENSG00000073921.18" ; ID "CCDC90B--PICALM^PICALM^ENSG00000073921.18" ; exon_id "ENSE00002187592.1" ; exon_number 1 ; gene_id "CCDC90B--PICALM^PICALM^ENSG00000073921.18" ; gene_name PICALM ; gene_type protein_coding ; havana_gene "OTTHUMG00000166981.5" ; havana_transcript "OTTHUMT00000392228.1" ; hgnc_id "HGNC:15514" ; level 2 ; orig_coord_info "chr11,86068651,86068780,-" ; protein_id "ENSP00000348718.5" ; tag basic ; transcript_id "CCDC90B--PICALM^ENST00000356360.9" ; transcript_name "PICALM-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC90B--PICALM HAVANA mRNA 17605 41315 . + . FI_gene_label "PICALM^ENSG00000073921.18" ; ID "CCDC90B--PICALM^ENST00000356360.9" ; Parent "CCDC90B--PICALM^PICALM^ENSG00000073921.18" ; exon_id "ENSE00002187592.1" ; exon_number 1 ; gene_id "CCDC90B--PICALM^PICALM^ENSG00000073921.18" ; gene_name PICALM ; gene_type protein_coding ; havana_gene "OTTHUMG00000166981.5" ; havana_transcript "OTTHUMT00000392228.1" ; hgnc_id "HGNC:15514" ; level 2 ; orig_coord_info "chr11,86068651,86068780,-" ; protein_id "ENSP00000348718.5" ; tag basic ; transcript_id "CCDC90B--PICALM^ENST00000356360.9" ; transcript_name "PICALM-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GLUL--RHBDL2 HAVANA gene 18980 28167 . + . FI_gene_label "RHBDL2^ENSG00000158315.11" ; ID "GLUL--RHBDL2^RHBDL2^ENSG00000158315.11" ; ccdsid "CCDS30680.1" ; exon_id "ENSE00003892180.1" ; exon_number 2 ; gene_id "GLUL--RHBDL2^RHBDL2^ENSG00000158315.11" ; gene_name RHBDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000487.4" ; havana_transcript "OTTHUMT00000001216.1" ; hgnc_id "HGNC:16083" ; level 2 ; orig_coord_info "chr1,38918967,38919212,-" ; protein_id "ENSP00000289248.2" ; tag basic appris_principal_1 CCDS ; transcript_id "GLUL--RHBDL2^ENST00000289248.6" ; transcript_name "RHBDL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
GLUL--RHBDL2 HAVANA mRNA 18980 28167 . + . FI_gene_label "RHBDL2^ENSG00000158315.11" ; ID "GLUL--RHBDL2^ENST00000289248.6" ; Parent "GLUL--RHBDL2^RHBDL2^ENSG00000158315.11" ; ccdsid "CCDS30680.1" ; exon_id "ENSE00003892180.1" ; exon_number 2 ; gene_id "GLUL--RHBDL2^RHBDL2^ENSG00000158315.11" ; gene_name RHBDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000487.4" ; havana_transcript "OTTHUMT00000001216.1" ; hgnc_id "HGNC:16083" ; level 2 ; orig_coord_info "chr1,38918967,38919212,-" ; protein_id "ENSP00000289248.2" ; tag basic appris_principal_1 CCDS ; transcript_id "GLUL--RHBDL2^ENST00000289248.6" ; transcript_name "RHBDL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
GLUL--RHBDL2 ENSEMBL gene 1001 11223 . + . FI_gene_label "GLUL^ENSG00000135821.19" ; ID "GLUL--RHBDL2^GLUL^ENSG00000135821.19" ; ccdsid "CCDS1344.1" ; exon_id "ENSE00003616388.1" ; exon_number 3 ; gene_id "GLUL--RHBDL2^GLUL^ENSG00000135821.19" ; gene_name GLUL ; gene_type protein_coding ; havana_gene "OTTHUMG00000037407.3" ; hgnc_id "HGNC:4341" ; level 3 ; orig_coord_info "chr1,182388572,182388737,-" ; protein_id "ENSP00000307900.5" ; tag basic appris_principal_1 CCDS ; transcript_id "GLUL--RHBDL2^ENST00000311223.9" ; transcript_name "GLUL-201" ; transcript_support_level 1 ; transcript_type protein_coding
GLUL--RHBDL2 ENSEMBL mRNA 1001 11223 . + . FI_gene_label "GLUL^ENSG00000135821.19" ; ID "GLUL--RHBDL2^ENST00000311223.9" ; Parent "GLUL--RHBDL2^GLUL^ENSG00000135821.19" ; ccdsid "CCDS1344.1" ; exon_id "ENSE00003616388.1" ; exon_number 3 ; gene_id "GLUL--RHBDL2^GLUL^ENSG00000135821.19" ; gene_name GLUL ; gene_type protein_coding ; havana_gene "OTTHUMG00000037407.3" ; hgnc_id "HGNC:4341" ; level 3 ; orig_coord_info "chr1,182388572,182388737,-" ; protein_id "ENSP00000307900.5" ; tag basic appris_principal_1 CCDS ; transcript_id "GLUL--RHBDL2^ENST00000311223.9" ; transcript_name "GLUL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC00272--RHBDL2 HAVANA gene 8020 17207 . + . FI_gene_label "RHBDL2^ENSG00000158315.11" ; ID "LINC00272--RHBDL2^RHBDL2^ENSG00000158315.11" ; ccdsid "CCDS30680.1" ; exon_id "ENSE00003892180.1" ; exon_number 2 ; gene_id "LINC00272--RHBDL2^RHBDL2^ENSG00000158315.11" ; gene_name RHBDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000487.4" ; havana_transcript "OTTHUMT00000001216.1" ; hgnc_id "HGNC:16083" ; level 2 ; orig_coord_info "chr1,38918967,38919212,-" ; protein_id "ENSP00000289248.2" ; tag basic appris_principal_1 CCDS ; transcript_id "LINC00272--RHBDL2^ENST00000289248.6" ; transcript_name "RHBDL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
LINC00272--RHBDL2 HAVANA mRNA 8020 17207 . + . FI_gene_label "RHBDL2^ENSG00000158315.11" ; ID "LINC00272--RHBDL2^ENST00000289248.6" ; Parent "LINC00272--RHBDL2^RHBDL2^ENSG00000158315.11" ; ccdsid "CCDS30680.1" ; exon_id "ENSE00003892180.1" ; exon_number 2 ; gene_id "LINC00272--RHBDL2^RHBDL2^ENSG00000158315.11" ; gene_name RHBDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000487.4" ; havana_transcript "OTTHUMT00000001216.1" ; hgnc_id "HGNC:16083" ; level 2 ; orig_coord_info "chr1,38918967,38919212,-" ; protein_id "ENSP00000289248.2" ; tag basic appris_principal_1 CCDS ; transcript_id "LINC00272--RHBDL2^ENST00000289248.6" ; transcript_name "RHBDL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHA13 HAVANA gene 8595 17035 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHA13 HAVANA mRNA 8595 17035 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA3--PCDHA13^ENST00000289272.3" ; Parent "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHA13 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHA13^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHA13 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHA13^ENST00000532566.3" ; Parent "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHA13^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC1 HAVANA gene 8595 18610 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHAC1 HAVANA mRNA 8595 18610 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA3--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC1 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC1^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHAC1 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC1^ENST00000532566.3" ; Parent "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC1^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC2 HAVANA gene 8601 19336 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHAC2 HAVANA mRNA 8601 19336 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA3--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC2 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC2^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHAC2 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC2^ENST00000532566.3" ; Parent "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC2^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PICALM--DLG2 HAVANA gene 49524 91841 . + . FI_gene_label "DLG2^ENSG00000150672.18" ; ID "PICALM--DLG2^DLG2^ENSG00000150672.18" ; ccdsid "CCDS55782.1" ; exon_id "ENSE00001532570.2" ; exon_number 1 ; gene_id "PICALM--DLG2^DLG2^ENSG00000150672.18" ; gene_name DLG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134309.9" ; hgnc_id "HGNC:2901" ; level 2 ; orig_coord_info "chr11,84316825,84317145,-" ; protein_id "ENSP00000280241.8" ; tag basic CCDS ; transcript_id "PICALM--DLG2^ENST00000280241.12" ; transcript_name "DLG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
PICALM--DLG2 HAVANA mRNA 49524 91841 . + . FI_gene_label "DLG2^ENSG00000150672.18" ; ID "PICALM--DLG2^ENST00000280241.12" ; Parent "PICALM--DLG2^DLG2^ENSG00000150672.18" ; ccdsid "CCDS55782.1" ; exon_id "ENSE00001532570.2" ; exon_number 1 ; gene_id "PICALM--DLG2^DLG2^ENSG00000150672.18" ; gene_name DLG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134309.9" ; hgnc_id "HGNC:2901" ; level 2 ; orig_coord_info "chr11,84316825,84317145,-" ; protein_id "ENSP00000280241.8" ; tag basic CCDS ; transcript_id "PICALM--DLG2^ENST00000280241.12" ; transcript_name "DLG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PICALM--DLG2 HAVANA gene 2103 25813 . + . FI_gene_label "PICALM^ENSG00000073921.18" ; ID "PICALM--DLG2^PICALM^ENSG00000073921.18" ; exon_id "ENSE00002187592.1" ; exon_number 1 ; gene_id "PICALM--DLG2^PICALM^ENSG00000073921.18" ; gene_name PICALM ; gene_type protein_coding ; havana_gene "OTTHUMG00000166981.5" ; havana_transcript "OTTHUMT00000392228.1" ; hgnc_id "HGNC:15514" ; level 2 ; orig_coord_info "chr11,86068651,86068780,-" ; protein_id "ENSP00000348718.5" ; tag basic ; transcript_id "PICALM--DLG2^ENST00000356360.9" ; transcript_name "PICALM-201" ; transcript_support_level 5 ; transcript_type protein_coding
PICALM--DLG2 HAVANA mRNA 2103 25813 . + . FI_gene_label "PICALM^ENSG00000073921.18" ; ID "PICALM--DLG2^ENST00000356360.9" ; Parent "PICALM--DLG2^PICALM^ENSG00000073921.18" ; exon_id "ENSE00002187592.1" ; exon_number 1 ; gene_id "PICALM--DLG2^PICALM^ENSG00000073921.18" ; gene_name PICALM ; gene_type protein_coding ; havana_gene "OTTHUMG00000166981.5" ; havana_transcript "OTTHUMT00000392228.1" ; hgnc_id "HGNC:15514" ; level 2 ; orig_coord_info "chr11,86068651,86068780,-" ; protein_id "ENSP00000348718.5" ; tag basic ; transcript_id "PICALM--DLG2^ENST00000356360.9" ; transcript_name "PICALM-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RNF19B--WIPF2 HAVANA gene 1001 11503 . + . FI_gene_label "RNF19B^ENSG00000116514.17" ; ID "RNF19B--WIPF2^RNF19B^ENSG00000116514.17" ; ccdsid "CCDS72754.1" ; exon_id "ENSE00003907808.1" ; exon_number 1 ; gene_id "RNF19B--WIPF2^RNF19B^ENSG00000116514.17" ; gene_name RNF19B ; gene_type protein_coding ; havana_gene "OTTHUMG00000004013.4" ; havana_transcript "OTTHUMT00000391687.1" ; hgnc_id "HGNC:26886" ; level 2 ; orig_coord_info "chr1,32964051,32964685,-" ; protein_id "ENSP00000235150.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "RNF19B--WIPF2^ENST00000235150.5" ; transcript_name "RNF19B-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF19B--WIPF2 HAVANA mRNA 1001 11503 . + . FI_gene_label "RNF19B^ENSG00000116514.17" ; ID "RNF19B--WIPF2^ENST00000235150.5" ; Parent "RNF19B--WIPF2^RNF19B^ENSG00000116514.17" ; ccdsid "CCDS72754.1" ; exon_id "ENSE00003907808.1" ; exon_number 1 ; gene_id "RNF19B--WIPF2^RNF19B^ENSG00000116514.17" ; gene_name RNF19B ; gene_type protein_coding ; havana_gene "OTTHUMG00000004013.4" ; havana_transcript "OTTHUMT00000391687.1" ; hgnc_id "HGNC:26886" ; level 2 ; orig_coord_info "chr1,32964051,32964685,-" ; protein_id "ENSP00000235150.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "RNF19B--WIPF2^ENST00000235150.5" ; transcript_name "RNF19B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF19B--WIPF2 HAVANA gene 14508 30396 . + . FI_gene_label "WIPF2^ENSG00000171475.14" ; ID "RNF19B--WIPF2^WIPF2^ENSG00000171475.14" ; ccdsid "CCDS11364.1" ; exon_id "ENSE00003596032.1" ; exon_number 2 ; gene_id "RNF19B--WIPF2^WIPF2^ENSG00000171475.14" ; gene_name WIPF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133331.4" ; havana_transcript "OTTHUMT00000257157.2" ; hgnc_id "HGNC:30923" ; level 2 ; orig_coord_info "chr17,40256460,40256522,+" ; protein_id "ENSP00000320924.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RNF19B--WIPF2^ENST00000323571.9" ; transcript_name "WIPF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF19B--WIPF2 HAVANA mRNA 14508 30396 . + . FI_gene_label "WIPF2^ENSG00000171475.14" ; ID "RNF19B--WIPF2^ENST00000323571.9" ; Parent "RNF19B--WIPF2^WIPF2^ENSG00000171475.14" ; ccdsid "CCDS11364.1" ; exon_id "ENSE00003596032.1" ; exon_number 2 ; gene_id "RNF19B--WIPF2^WIPF2^ENSG00000171475.14" ; gene_name WIPF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133331.4" ; havana_transcript "OTTHUMT00000257157.2" ; hgnc_id "HGNC:30923" ; level 2 ; orig_coord_info "chr17,40256460,40256522,+" ; protein_id "ENSP00000320924.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RNF19B--WIPF2^ENST00000323571.9" ; transcript_name "WIPF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RRAGC--RGL1 HAVANA gene 14566 38682 . + . FI_gene_label "RGL1^ENSG00000143344.16" ; ID "RRAGC--RGL1^RGL1^ENSG00000143344.16" ; ccdsid "CCDS1359.1" ; exon_id "ENSE00002713317.1" ; exon_number 2 ; gene_id "RRAGC--RGL1^RGL1^ENSG00000143344.16" ; gene_name RGL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035328.3" ; havana_transcript "OTTHUMT00000085481.3" ; hgnc_id "HGNC:30281" ; level 2 ; orig_coord_info "chr1,183742158,183742289,+" ; protein_id "ENSP00000303192.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "RRAGC--RGL1^ENST00000304685.8" ; transcript_name "RGL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RRAGC--RGL1 HAVANA mRNA 14566 38682 . + . FI_gene_label "RGL1^ENSG00000143344.16" ; ID "RRAGC--RGL1^ENST00000304685.8" ; Parent "RRAGC--RGL1^RGL1^ENSG00000143344.16" ; ccdsid "CCDS1359.1" ; exon_id "ENSE00002713317.1" ; exon_number 2 ; gene_id "RRAGC--RGL1^RGL1^ENSG00000143344.16" ; gene_name RGL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035328.3" ; havana_transcript "OTTHUMT00000085481.3" ; hgnc_id "HGNC:30281" ; level 2 ; orig_coord_info "chr1,183742158,183742289,+" ; protein_id "ENSP00000303192.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "RRAGC--RGL1^ENST00000304685.8" ; transcript_name "RGL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RRAGC--RGL1 HAVANA gene 1001 11565 . + . FI_gene_label "RRAGC^ENSG00000116954.8" ; ID "RRAGC--RGL1^RRAGC^ENSG00000116954.8" ; ccdsid "CCDS430.1" ; exon_id "ENSE00001899779.2" ; exon_number 1 ; gene_id "RRAGC--RGL1^RRAGC^ENSG00000116954.8" ; gene_name RRAGC ; gene_type protein_coding ; havana_gene "OTTHUMG00000000490.3" ; havana_transcript "OTTHUMT00000001222.3" ; hgnc_id "HGNC:19902" ; level 2 ; orig_coord_info "chr1,38859410,38859646,-" ; protein_id "ENSP00000362092.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RRAGC--RGL1^ENST00000373001.4" ; transcript_name "RRAGC-201" ; transcript_support_level 1 ; transcript_type protein_coding
RRAGC--RGL1 HAVANA mRNA 1001 11565 . + . FI_gene_label "RRAGC^ENSG00000116954.8" ; ID "RRAGC--RGL1^ENST00000373001.4" ; Parent "RRAGC--RGL1^RRAGC^ENSG00000116954.8" ; ccdsid "CCDS430.1" ; exon_id "ENSE00001899779.2" ; exon_number 1 ; gene_id "RRAGC--RGL1^RRAGC^ENSG00000116954.8" ; gene_name RRAGC ; gene_type protein_coding ; havana_gene "OTTHUMG00000000490.3" ; havana_transcript "OTTHUMT00000001222.3" ; hgnc_id "HGNC:19902" ; level 2 ; orig_coord_info "chr1,38859410,38859646,-" ; protein_id "ENSP00000362092.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RRAGC--RGL1^ENST00000373001.4" ; transcript_name "RRAGC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SGMS1--ASAH2 HAVANA gene 26199 48113 . + . FI_gene_label "ASAH2^ENSG00000188611.16" ; ID "SGMS1--ASAH2^ASAH2^ENSG00000188611.16" ; exon_id "ENSE00001678326.1" ; exon_number 1 ; gene_id "SGMS1--ASAH2^ASAH2^ENSG00000188611.16" ; gene_name ASAH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018223.4" ; havana_transcript "OTTHUMT00000346921.1" ; hgnc_id "HGNC:18860" ; level 2 ; orig_coord_info "chr10,50248484,50248553,-" ; protein_id "ENSP00000329886.6" ; tag basic ; transcript_id "SGMS1--ASAH2^ENST00000329428.10" ; transcript_name "ASAH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SGMS1--ASAH2 HAVANA mRNA 26199 48113 . + . FI_gene_label "ASAH2^ENSG00000188611.16" ; ID "SGMS1--ASAH2^ENST00000329428.10" ; Parent "SGMS1--ASAH2^ASAH2^ENSG00000188611.16" ; exon_id "ENSE00001678326.1" ; exon_number 1 ; gene_id "SGMS1--ASAH2^ASAH2^ENSG00000188611.16" ; gene_name ASAH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018223.4" ; havana_transcript "OTTHUMT00000346921.1" ; hgnc_id "HGNC:18860" ; level 2 ; orig_coord_info "chr10,50248484,50248553,-" ; protein_id "ENSP00000329886.6" ; tag basic ; transcript_id "SGMS1--ASAH2^ENST00000329428.10" ; transcript_name "ASAH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SGMS1--ASAH2 ENSEMBL gene 11156 16060 . + . FI_gene_label "SGMS1^ENSG00000198964.14" ; ID "SGMS1--ASAH2^SGMS1^ENSG00000198964.14" ; exon_id "ENSE00002206547.1" ; exon_number 1 ; gene_id "SGMS1--ASAH2^SGMS1^ENSG00000198964.14" ; gene_name SGMS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018231.8" ; hgnc_id "HGNC:29799" ; level 3 ; orig_coord_info "chr10,50343492,50344114,-" ; protein_id "ENSP00000355235.2" ; tag basic ; transcript_id "SGMS1--ASAH2^ENST00000361543.3" ; transcript_name "SGMS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SGMS1--ASAH2 ENSEMBL mRNA 11156 16060 . + . FI_gene_label "SGMS1^ENSG00000198964.14" ; ID "SGMS1--ASAH2^ENST00000361543.3" ; Parent "SGMS1--ASAH2^SGMS1^ENSG00000198964.14" ; exon_id "ENSE00002206547.1" ; exon_number 1 ; gene_id "SGMS1--ASAH2^SGMS1^ENSG00000198964.14" ; gene_name SGMS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018231.8" ; hgnc_id "HGNC:29799" ; level 3 ; orig_coord_info "chr10,50343492,50344114,-" ; protein_id "ENSP00000355235.2" ; tag basic ; transcript_id "SGMS1--ASAH2^ENST00000361543.3" ; transcript_name "SGMS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SRGAP1--RXYLT1-AS1 HAVANA gene 1001 46352 . + . FI_gene_label "SRGAP1^ENSG00000196935.9" ; ID "SRGAP1--RXYLT1-AS1^SRGAP1^ENSG00000196935.9" ; ccdsid "CCDS8967.1" ; exon_id "ENSE00002278180.2" ; exon_number 1 ; gene_id "SRGAP1--RXYLT1-AS1^SRGAP1^ENSG00000196935.9" ; gene_name SRGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168750.3" ; havana_transcript "OTTHUMT00000400896.3" ; hgnc_id "HGNC:17382" ; level 2 ; orig_coord_info "chr12,63844817,63844883,+" ; protein_id "ENSP00000347198.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SRGAP1--RXYLT1-AS1^ENST00000355086.8" ; transcript_name "SRGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SRGAP1--RXYLT1-AS1 HAVANA mRNA 1001 46352 . + . FI_gene_label "SRGAP1^ENSG00000196935.9" ; ID "SRGAP1--RXYLT1-AS1^ENST00000355086.8" ; Parent "SRGAP1--RXYLT1-AS1^SRGAP1^ENSG00000196935.9" ; ccdsid "CCDS8967.1" ; exon_id "ENSE00002278180.2" ; exon_number 1 ; gene_id "SRGAP1--RXYLT1-AS1^SRGAP1^ENSG00000196935.9" ; gene_name SRGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168750.3" ; havana_transcript "OTTHUMT00000400896.3" ; hgnc_id "HGNC:17382" ; level 2 ; orig_coord_info "chr12,63844817,63844883,+" ; protein_id "ENSP00000347198.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SRGAP1--RXYLT1-AS1^ENST00000355086.8" ; transcript_name "SRGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TEDDM1--RHBDL2 HAVANA gene 7701 16888 . + . FI_gene_label "RHBDL2^ENSG00000158315.11" ; ID "TEDDM1--RHBDL2^RHBDL2^ENSG00000158315.11" ; ccdsid "CCDS30680.1" ; exon_id "ENSE00003892180.1" ; exon_number 2 ; gene_id "TEDDM1--RHBDL2^RHBDL2^ENSG00000158315.11" ; gene_name RHBDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000487.4" ; havana_transcript "OTTHUMT00000001216.1" ; hgnc_id "HGNC:16083" ; level 2 ; orig_coord_info "chr1,38918967,38919212,-" ; protein_id "ENSP00000289248.2" ; tag basic appris_principal_1 CCDS ; transcript_id "TEDDM1--RHBDL2^ENST00000289248.6" ; transcript_name "RHBDL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
TEDDM1--RHBDL2 HAVANA mRNA 7701 16888 . + . FI_gene_label "RHBDL2^ENSG00000158315.11" ; ID "TEDDM1--RHBDL2^ENST00000289248.6" ; Parent "TEDDM1--RHBDL2^RHBDL2^ENSG00000158315.11" ; ccdsid "CCDS30680.1" ; exon_id "ENSE00003892180.1" ; exon_number 2 ; gene_id "TEDDM1--RHBDL2^RHBDL2^ENSG00000158315.11" ; gene_name RHBDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000487.4" ; havana_transcript "OTTHUMT00000001216.1" ; hgnc_id "HGNC:16083" ; level 2 ; orig_coord_info "chr1,38918967,38919212,-" ; protein_id "ENSP00000289248.2" ; tag basic appris_principal_1 CCDS ; transcript_id "TEDDM1--RHBDL2^ENST00000289248.6" ; transcript_name "RHBDL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TEDDM1--RHBDL2 HAVANA gene 1001 3551 . + . FI_gene_label "TEDDM1^ENSG00000203730.3" ; ID "TEDDM1--RHBDL2^TEDDM1^ENSG00000203730.3" ; ccdsid "CCDS30953.1" ; exon_id "ENSE00001445039.2" ; exon_number 1 ; gene_id "TEDDM1--RHBDL2^TEDDM1^ENSG00000203730.3" ; gene_name TEDDM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037398.2" ; havana_transcript "OTTHUMT00000091029.2" ; hgnc_id "HGNC:30233" ; level 2 ; orig_coord_info "chr1,182399667,182400485,-" ; protein_id "ENSP00000356536.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TEDDM1--RHBDL2^ENST00000367565.2" ; transcript_name "TEDDM1-201" ; transcript_support_level NA ; transcript_type protein_coding
TEDDM1--RHBDL2 HAVANA mRNA 1001 3551 . + . FI_gene_label "TEDDM1^ENSG00000203730.3" ; ID "TEDDM1--RHBDL2^ENST00000367565.2" ; Parent "TEDDM1--RHBDL2^TEDDM1^ENSG00000203730.3" ; ccdsid "CCDS30953.1" ; exon_id "ENSE00001445039.2" ; exon_number 1 ; gene_id "TEDDM1--RHBDL2^TEDDM1^ENSG00000203730.3" ; gene_name TEDDM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037398.2" ; havana_transcript "OTTHUMT00000091029.2" ; hgnc_id "HGNC:30233" ; level 2 ; orig_coord_info "chr1,182399667,182400485,-" ; protein_id "ENSP00000356536.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TEDDM1--RHBDL2^ENST00000367565.2" ; transcript_name "TEDDM1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
TMBIM6--RHBDL2 HAVANA gene 4958 19125 . + . FI_gene_label "TMBIM6^ENSG00000139644.13" ; ID "TMBIM6--RHBDL2^TMBIM6^ENSG00000139644.13" ; ccdsid "CCDS31797.1" ; exon_id "ENSE00003564981.1" ; exon_number 2 ; gene_id "TMBIM6--RHBDL2^TMBIM6^ENSG00000139644.13" ; gene_name TMBIM6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169652.9" ; havana_transcript "OTTHUMT00000405289.3" ; hgnc_id "HGNC:11723" ; level 2 ; orig_coord_info "chr12,49752494,49752549,+" ; protein_id "ENSP00000267115.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMBIM6--RHBDL2^ENST00000267115.10" ; transcript_name "TMBIM6-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMBIM6--RHBDL2 HAVANA mRNA 4958 19125 . + . FI_gene_label "TMBIM6^ENSG00000139644.13" ; ID "TMBIM6--RHBDL2^ENST00000267115.10" ; Parent "TMBIM6--RHBDL2^TMBIM6^ENSG00000139644.13" ; ccdsid "CCDS31797.1" ; exon_id "ENSE00003564981.1" ; exon_number 2 ; gene_id "TMBIM6--RHBDL2^TMBIM6^ENSG00000139644.13" ; gene_name TMBIM6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169652.9" ; havana_transcript "OTTHUMT00000405289.3" ; hgnc_id "HGNC:11723" ; level 2 ; orig_coord_info "chr12,49752494,49752549,+" ; protein_id "ENSP00000267115.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMBIM6--RHBDL2^ENST00000267115.10" ; transcript_name "TMBIM6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMBIM6--RHBDL2 HAVANA gene 23275 32462 . + . FI_gene_label "RHBDL2^ENSG00000158315.11" ; ID "TMBIM6--RHBDL2^RHBDL2^ENSG00000158315.11" ; ccdsid "CCDS30680.1" ; exon_id "ENSE00003892180.1" ; exon_number 2 ; gene_id "TMBIM6--RHBDL2^RHBDL2^ENSG00000158315.11" ; gene_name RHBDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000487.4" ; havana_transcript "OTTHUMT00000001216.1" ; hgnc_id "HGNC:16083" ; level 2 ; orig_coord_info "chr1,38918967,38919212,-" ; protein_id "ENSP00000289248.2" ; tag basic appris_principal_1 CCDS ; transcript_id "TMBIM6--RHBDL2^ENST00000289248.6" ; transcript_name "RHBDL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
TMBIM6--RHBDL2 HAVANA mRNA 23275 32462 . + . FI_gene_label "RHBDL2^ENSG00000158315.11" ; ID "TMBIM6--RHBDL2^ENST00000289248.6" ; Parent "TMBIM6--RHBDL2^RHBDL2^ENSG00000158315.11" ; ccdsid "CCDS30680.1" ; exon_id "ENSE00003892180.1" ; exon_number 2 ; gene_id "TMBIM6--RHBDL2^RHBDL2^ENSG00000158315.11" ; gene_name RHBDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000487.4" ; havana_transcript "OTTHUMT00000001216.1" ; hgnc_id "HGNC:16083" ; level 2 ; orig_coord_info "chr1,38918967,38919212,-" ; protein_id "ENSP00000289248.2" ; tag basic appris_principal_1 CCDS ; transcript_id "TMBIM6--RHBDL2^ENST00000289248.6" ; transcript_name "RHBDL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WIPF2--RRAGC HAVANA gene 1001 16889 . + . FI_gene_label "WIPF2^ENSG00000171475.14" ; ID "WIPF2--RRAGC^WIPF2^ENSG00000171475.14" ; ccdsid "CCDS11364.1" ; exon_id "ENSE00003596032.1" ; exon_number 2 ; gene_id "WIPF2--RRAGC^WIPF2^ENSG00000171475.14" ; gene_name WIPF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133331.4" ; havana_transcript "OTTHUMT00000257157.2" ; hgnc_id "HGNC:30923" ; level 2 ; orig_coord_info "chr17,40256460,40256522,+" ; protein_id "ENSP00000320924.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "WIPF2--RRAGC^ENST00000323571.9" ; transcript_name "WIPF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
WIPF2--RRAGC HAVANA mRNA 1001 16889 . + . FI_gene_label "WIPF2^ENSG00000171475.14" ; ID "WIPF2--RRAGC^ENST00000323571.9" ; Parent "WIPF2--RRAGC^WIPF2^ENSG00000171475.14" ; ccdsid "CCDS11364.1" ; exon_id "ENSE00003596032.1" ; exon_number 2 ; gene_id "WIPF2--RRAGC^WIPF2^ENSG00000171475.14" ; gene_name WIPF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133331.4" ; havana_transcript "OTTHUMT00000257157.2" ; hgnc_id "HGNC:30923" ; level 2 ; orig_coord_info "chr17,40256460,40256522,+" ; protein_id "ENSP00000320924.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "WIPF2--RRAGC^ENST00000323571.9" ; transcript_name "WIPF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WIPF2--RRAGC HAVANA gene 19890 30454 . + . FI_gene_label "RRAGC^ENSG00000116954.8" ; ID "WIPF2--RRAGC^RRAGC^ENSG00000116954.8" ; ccdsid "CCDS430.1" ; exon_id "ENSE00001899779.2" ; exon_number 1 ; gene_id "WIPF2--RRAGC^RRAGC^ENSG00000116954.8" ; gene_name RRAGC ; gene_type protein_coding ; havana_gene "OTTHUMG00000000490.3" ; havana_transcript "OTTHUMT00000001222.3" ; hgnc_id "HGNC:19902" ; level 2 ; orig_coord_info "chr1,38859410,38859646,-" ; protein_id "ENSP00000362092.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WIPF2--RRAGC^ENST00000373001.4" ; transcript_name "RRAGC-201" ; transcript_support_level 1 ; transcript_type protein_coding
WIPF2--RRAGC HAVANA mRNA 19890 30454 . + . FI_gene_label "RRAGC^ENSG00000116954.8" ; ID "WIPF2--RRAGC^ENST00000373001.4" ; Parent "WIPF2--RRAGC^RRAGC^ENSG00000116954.8" ; ccdsid "CCDS430.1" ; exon_id "ENSE00001899779.2" ; exon_number 1 ; gene_id "WIPF2--RRAGC^RRAGC^ENSG00000116954.8" ; gene_name RRAGC ; gene_type protein_coding ; havana_gene "OTTHUMG00000000490.3" ; havana_transcript "OTTHUMT00000001222.3" ; hgnc_id "HGNC:19902" ; level 2 ; orig_coord_info "chr1,38859410,38859646,-" ; protein_id "ENSP00000362092.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WIPF2--RRAGC^ENST00000373001.4" ; transcript_name "RRAGC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACTBP6--ACTB HAVANA gene 1001 2090 . + . FI_gene_label "ACTBP6^ENSG00000203413.3" ; ID "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3" ; exon_id "ENSE00002116857.1" ; exon_number 1 ; gene_id "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3" ; gene_name ACTBP6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000164632.2" ; havana_transcript "OTTHUMT00000379462.2" ; hgnc_id "HGNC:139" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,84948585,84949674,+" ; tag pseudo_consens basic ; transcript_id "ACTBP6--ACTB^ENST00000520036.1" ; transcript_name "ACTBP6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ACTBP6--ACTB HAVANA RNA 1001 2090 . + . FI_gene_label "ACTBP6^ENSG00000203413.3" ; ID "ACTBP6--ACTB^ENST00000520036.1" ; Parent "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3" ; exon_id "ENSE00002116857.1" ; exon_number 1 ; gene_id "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3" ; gene_name ACTBP6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000164632.2" ; havana_transcript "OTTHUMT00000379462.2" ; hgnc_id "HGNC:139" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,84948585,84949674,+" ; tag pseudo_consens basic ; transcript_id "ACTBP6--ACTB^ENST00000520036.1" ; transcript_name "ACTBP6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AP000347.1--IGLL1 HAVANA gene 8244 18675 . + . FI_gene_label "AP000347.1^ENSG00000272578.5" ; ID "AP000347.1--IGLL1^AP000347.1^ENSG00000272578.5" ; exon_id "ENSE00001748689.1" ; exon_number 1 ; gene_id "AP000347.1--IGLL1^AP000347.1^ENSG00000272578.5" ; gene_name "AP000347.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000186353.2" ; havana_transcript "OTTHUMT00000471975.1" ; level 2 ; orig_coord_info "chr22,23690232,23693185,-" ; tag basic ; transcript_id "AP000347.1--IGLL1^ENST00000417194.5" ; transcript_name "AP000347.1-201" ; transcript_support_level 1 ; transcript_type processed_transcript
AP000347.1--IGLL1 HAVANA RNA 8244 18675 . + . FI_gene_label "AP000347.1^ENSG00000272578.5" ; ID "AP000347.1--IGLL1^ENST00000417194.5" ; Parent "AP000347.1--IGLL1^AP000347.1^ENSG00000272578.5" ; exon_id "ENSE00001748689.1" ; exon_number 1 ; gene_id "AP000347.1--IGLL1^AP000347.1^ENSG00000272578.5" ; gene_name "AP000347.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000186353.2" ; havana_transcript "OTTHUMT00000471975.1" ; level 2 ; orig_coord_info "chr22,23690232,23693185,-" ; tag basic ; transcript_id "AP000347.1--IGLL1^ENST00000417194.5" ; transcript_name "AP000347.1-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
BAIAP2L2--AL008582.1 HAVANA gene 17094 17535 . + . FI_gene_label "AL008582.1^ENSG00000273424.1" ; ID "BAIAP2L2--AL008582.1^AL008582.1^ENSG00000273424.1" ; exon_id "ENSE00003706318.1" ; exon_number 1 ; gene_id "BAIAP2L2--AL008582.1^AL008582.1^ENSG00000273424.1" ; gene_name "AL008582.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000186116.1" ; havana_transcript "OTTHUMT00000472277.1" ; level 2 ; orig_coord_info "chr22,41430934,41431375,+" ; tag basic ; transcript_id "BAIAP2L2--AL008582.1^ENST00000609612.1" ; transcript_name "AL008582.1-201" ; transcript_support_level NA ; transcript_type lncRNA
BAIAP2L2--AL008582.1 HAVANA RNA 17094 17535 . + . FI_gene_label "AL008582.1^ENSG00000273424.1" ; ID "BAIAP2L2--AL008582.1^ENST00000609612.1" ; Parent "BAIAP2L2--AL008582.1^AL008582.1^ENSG00000273424.1" ; exon_id "ENSE00003706318.1" ; exon_number 1 ; gene_id "BAIAP2L2--AL008582.1^AL008582.1^ENSG00000273424.1" ; gene_name "AL008582.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000186116.1" ; havana_transcript "OTTHUMT00000472277.1" ; level 2 ; orig_coord_info "chr22,41430934,41431375,+" ; tag basic ; transcript_id "BAIAP2L2--AL008582.1^ENST00000609612.1" ; transcript_name "AL008582.1-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
CCDC50--LINC00877 HAVANA gene 30451 35134 . + . FI_gene_label "LINC00877^ENSG00000241163.8" ; ID "CCDC50--LINC00877^LINC00877^ENSG00000241163.8" ; exon_id "ENSE00001812226.1" ; exon_number 1 ; gene_id "CCDC50--LINC00877^LINC00877^ENSG00000241163.8" ; gene_name LINC00877 ; gene_type lncRNA ; havana_gene "OTTHUMG00000158784.20" ; havana_transcript "OTTHUMT00000352212.2" ; hgnc_id "HGNC:27706" ; level 2 ; orig_coord_info "chr3,72100788,72100869,-" ; transcript_id "CCDC50--LINC00877^ENST00000462492.5" ; transcript_name "LINC00877-201" ; transcript_support_level 3 ; transcript_type lncRNA
CCDC50--LINC00877 HAVANA RNA 30451 35134 . + . FI_gene_label "LINC00877^ENSG00000241163.8" ; ID "CCDC50--LINC00877^ENST00000462492.5" ; Parent "CCDC50--LINC00877^LINC00877^ENSG00000241163.8" ; exon_id "ENSE00001812226.1" ; exon_number 1 ; gene_id "CCDC50--LINC00877^LINC00877^ENSG00000241163.8" ; gene_name LINC00877 ; gene_type lncRNA ; havana_gene "OTTHUMG00000158784.20" ; havana_transcript "OTTHUMT00000352212.2" ; hgnc_id "HGNC:27706" ; level 2 ; orig_coord_info "chr3,72100788,72100869,-" ; transcript_id "CCDC50--LINC00877^ENST00000462492.5" ; transcript_name "LINC00877-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
LINC00272--RHBDL2 HAVANA gene 1001 3870 . + . FI_gene_label "LINC00272^ENSG00000203729.8" ; ID "LINC00272--RHBDL2^LINC00272^ENSG00000203729.8" ; exon_id "ENSE00001445037.1" ; exon_number 1 ; gene_id "LINC00272--RHBDL2^LINC00272^ENSG00000203729.8" ; gene_name LINC00272 ; gene_type lncRNA ; havana_gene "OTTHUMG00000037402.2" ; havana_transcript "OTTHUMT00000091036.2" ; hgnc_id "HGNC:26898" ; level 2 ; orig_coord_info "chr1,182407621,182408032,+" ; tag basic ; transcript_id "LINC00272--RHBDL2^ENST00000367563.7" ; transcript_name "LINC00272-201" ; transcript_support_level 1 ; transcript_type lncRNA
LINC00272--RHBDL2 HAVANA RNA 1001 3870 . + . FI_gene_label "LINC00272^ENSG00000203729.8" ; ID "LINC00272--RHBDL2^ENST00000367563.7" ; Parent "LINC00272--RHBDL2^LINC00272^ENSG00000203729.8" ; exon_id "ENSE00001445037.1" ; exon_number 1 ; gene_id "LINC00272--RHBDL2^LINC00272^ENSG00000203729.8" ; gene_name LINC00272 ; gene_type lncRNA ; havana_gene "OTTHUMG00000037402.2" ; havana_transcript "OTTHUMT00000091036.2" ; hgnc_id "HGNC:26898" ; level 2 ; orig_coord_info "chr1,182407621,182408032,+" ; tag basic ; transcript_id "LINC00272--RHBDL2^ENST00000367563.7" ; transcript_name "LINC00272-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
SRGAP1--RXYLT1-AS1 HAVANA gene 49353 52915 . + . FI_gene_label "RXYLT1-AS1^ENSG00000255850.2" ; ID "SRGAP1--RXYLT1-AS1^RXYLT1-AS1^ENSG00000255850.2" ; exon_id "ENSE00002289797.1" ; exon_number 1 ; gene_id "SRGAP1--RXYLT1-AS1^RXYLT1-AS1^ENSG00000255850.2" ; gene_name "RXYLT1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168731.2" ; havana_transcript "OTTHUMT00000400829.1" ; hgnc_id "HGNC:48910" ; level 2 ; orig_coord_info "chr12,63821929,63822156,-" ; tag basic ; transcript_id "SRGAP1--RXYLT1-AS1^ENST00000546214.1" ; transcript_name "RXYLT1-AS1-201" ; transcript_support_level 4 ; transcript_type lncRNA
SRGAP1--RXYLT1-AS1 HAVANA RNA 49353 52915 . + . FI_gene_label "RXYLT1-AS1^ENSG00000255850.2" ; ID "SRGAP1--RXYLT1-AS1^ENST00000546214.1" ; Parent "SRGAP1--RXYLT1-AS1^RXYLT1-AS1^ENSG00000255850.2" ; exon_id "ENSE00002289797.1" ; exon_number 1 ; gene_id "SRGAP1--RXYLT1-AS1^RXYLT1-AS1^ENSG00000255850.2" ; gene_name "RXYLT1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168731.2" ; havana_transcript "OTTHUMT00000400829.1" ; hgnc_id "HGNC:48910" ; level 2 ; orig_coord_info "chr12,63821929,63822156,-" ; tag basic ; transcript_id "SRGAP1--RXYLT1-AS1^ENST00000546214.1" ; transcript_name "RXYLT1-AS1-201" ; transcript_support_level 4 ; transcript_type lncRNA
448 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
940 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 45 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
Lets remove isoform BAIAP2L2--ACO2^ENST00000678269.1
1 identical isoforms removed
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed