Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 26370
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 26370
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:26370
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 5 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
ABCC8--NLRC3 HAVANA gene 1035 39136 . + . FI_gene_label "ABCC8^ENSG00000006071.15" ; ID "ABCC8--NLRC3^ABCC8^ENSG00000006071.15" ; ccdsid "CCDS73264.1" ; exon_id "ENSE00003899289.1" ; exon_number 1 ; gene_id "ABCC8--NLRC3^ABCC8^ENSG00000006071.15" ; gene_name ABCC8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166316.33" ; havana_transcript "OTTHUMT00000496828.1" ; hgnc_id "HGNC:59" ; level 2 ; orig_coord_info "chr11,17476629,17476776,-" ; protein_id "ENSP00000303960.4" ; tag RNA_Seq_supported_partial basic appris_alternative_1 CCDS ; transcript_id "ABCC8--NLRC3^ENST00000302539.9" ; transcript_name "ABCC8-201" ; transcript_support_level 5 ; transcript_type protein_coding
ABCC8--NLRC3 HAVANA mRNA 1035 39136 . + . FI_gene_label "ABCC8^ENSG00000006071.15" ; ID "ABCC8--NLRC3^ENST00000302539.9" ; Parent "ABCC8--NLRC3^ABCC8^ENSG00000006071.15" ; ccdsid "CCDS73264.1" ; exon_id "ENSE00003899289.1" ; exon_number 1 ; gene_id "ABCC8--NLRC3^ABCC8^ENSG00000006071.15" ; gene_name ABCC8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166316.33" ; havana_transcript "OTTHUMT00000496828.1" ; hgnc_id "HGNC:59" ; level 2 ; orig_coord_info "chr11,17476629,17476776,-" ; protein_id "ENSP00000303960.4" ; tag RNA_Seq_supported_partial basic appris_alternative_1 CCDS ; transcript_id "ABCC8--NLRC3^ENST00000302539.9" ; transcript_name "ABCC8-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ABCC8--NLRC3 HAVANA gene 42639 60312 . + . FI_gene_label "NLRC3^ENSG00000167984.18" ; ID "ABCC8--NLRC3^NLRC3^ENSG00000167984.18" ; exon_id "ENSE00003715091.1" ; exon_number 1 ; gene_id "ABCC8--NLRC3^NLRC3^ENSG00000167984.18" ; gene_name NLRC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177561.7" ; havana_transcript "OTTHUMT00000440759.3" ; hgnc_id "HGNC:29889" ; level 2 ; orig_coord_info "chr16,3577149,3577213,-" ; protein_id "ENSP00000323897.9" ; tag basic appris_alternative_2 ; transcript_id "ABCC8--NLRC3^ENST00000324659.12" ; transcript_name "NLRC3-201" ; transcript_support_level 5 ; transcript_type protein_coding
ABCC8--NLRC3 HAVANA mRNA 42639 60312 . + . FI_gene_label "NLRC3^ENSG00000167984.18" ; ID "ABCC8--NLRC3^ENST00000324659.12" ; Parent "ABCC8--NLRC3^NLRC3^ENSG00000167984.18" ; exon_id "ENSE00003715091.1" ; exon_number 1 ; gene_id "ABCC8--NLRC3^NLRC3^ENSG00000167984.18" ; gene_name NLRC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177561.7" ; havana_transcript "OTTHUMT00000440759.3" ; hgnc_id "HGNC:29889" ; level 2 ; orig_coord_info "chr16,3577149,3577213,-" ; protein_id "ENSP00000323897.9" ; tag basic appris_alternative_2 ; transcript_id "ABCC8--NLRC3^ENST00000324659.12" ; transcript_name "NLRC3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC006398.1--WIPF3 HAVANA gene 7784 21780 . + . FI_gene_label "WIPF3^ENSG00000122574.11" ; ID "AC006398.1--WIPF3^WIPF3^ENSG00000122574.11" ; ccdsid "CCDS56472.1" ; exon_id "ENSE00001587547.1" ; exon_number 2 ; gene_id "AC006398.1--WIPF3^WIPF3^ENSG00000122574.11" ; gene_name WIPF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152761.1" ; havana_transcript "OTTHUMT00000327705.1" ; hgnc_id "HGNC:22004" ; level 2 ; orig_coord_info "chr7,29834725,29834814,+" ; protein_id "ENSP00000242140.6" ; tag inferred_exon_combination basic appris_principal_2 CCDS ; transcript_id "AC006398.1--WIPF3^ENST00000242140.9" ; transcript_name "WIPF3-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC006398.1--WIPF3 HAVANA mRNA 7784 21780 . + . FI_gene_label "WIPF3^ENSG00000122574.11" ; ID "AC006398.1--WIPF3^ENST00000242140.9" ; Parent "AC006398.1--WIPF3^WIPF3^ENSG00000122574.11" ; ccdsid "CCDS56472.1" ; exon_id "ENSE00001587547.1" ; exon_number 2 ; gene_id "AC006398.1--WIPF3^WIPF3^ENSG00000122574.11" ; gene_name WIPF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152761.1" ; havana_transcript "OTTHUMT00000327705.1" ; hgnc_id "HGNC:22004" ; level 2 ; orig_coord_info "chr7,29834725,29834814,+" ; protein_id "ENSP00000242140.6" ; tag inferred_exon_combination basic appris_principal_2 CCDS ; transcript_id "AC006398.1--WIPF3^ENST00000242140.9" ; transcript_name "WIPF3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC006466.1--WIPF3 HAVANA gene 4358 18354 . + . FI_gene_label "WIPF3^ENSG00000122574.11" ; ID "AC006466.1--WIPF3^WIPF3^ENSG00000122574.11" ; ccdsid "CCDS56472.1" ; exon_id "ENSE00001587547.1" ; exon_number 2 ; gene_id "AC006466.1--WIPF3^WIPF3^ENSG00000122574.11" ; gene_name WIPF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152761.1" ; havana_transcript "OTTHUMT00000327705.1" ; hgnc_id "HGNC:22004" ; level 2 ; orig_coord_info "chr7,29834725,29834814,+" ; protein_id "ENSP00000242140.6" ; tag inferred_exon_combination basic appris_principal_2 CCDS ; transcript_id "AC006466.1--WIPF3^ENST00000242140.9" ; transcript_name "WIPF3-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC006466.1--WIPF3 HAVANA mRNA 4358 18354 . + . FI_gene_label "WIPF3^ENSG00000122574.11" ; ID "AC006466.1--WIPF3^ENST00000242140.9" ; Parent "AC006466.1--WIPF3^WIPF3^ENSG00000122574.11" ; ccdsid "CCDS56472.1" ; exon_id "ENSE00001587547.1" ; exon_number 2 ; gene_id "AC006466.1--WIPF3^WIPF3^ENSG00000122574.11" ; gene_name WIPF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152761.1" ; havana_transcript "OTTHUMT00000327705.1" ; hgnc_id "HGNC:22004" ; level 2 ; orig_coord_info "chr7,29834725,29834814,+" ; protein_id "ENSP00000242140.6" ; tag inferred_exon_combination basic appris_principal_2 CCDS ; transcript_id "AC006466.1--WIPF3^ENST00000242140.9" ; transcript_name "WIPF3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC024257.2--STAP2 HAVANA gene 5631 15278 . + . FI_gene_label "STAP2^ENSG00000178078.12" ; ID "AC024257.2--STAP2^STAP2^ENSG00000178078.12" ; ccdsid "CCDS45926.1" ; exon_id "ENSE00002980645.2" ; exon_number 1 ; gene_id "AC024257.2--STAP2^STAP2^ENSG00000178078.12" ; gene_name STAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181884.4" ; havana_transcript "OTTHUMT00000458114.2" ; hgnc_id "HGNC:30430" ; level 2 ; orig_coord_info "chr19,4338652,4338753,-" ; protein_id "ENSP00000471052.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "AC024257.2--STAP2^ENST00000594605.6" ; transcript_name "STAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC024257.2--STAP2 HAVANA mRNA 5631 15278 . + . FI_gene_label "STAP2^ENSG00000178078.12" ; ID "AC024257.2--STAP2^ENST00000594605.6" ; Parent "AC024257.2--STAP2^STAP2^ENSG00000178078.12" ; ccdsid "CCDS45926.1" ; exon_id "ENSE00002980645.2" ; exon_number 1 ; gene_id "AC024257.2--STAP2^STAP2^ENSG00000178078.12" ; gene_name STAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181884.4" ; havana_transcript "OTTHUMT00000458114.2" ; hgnc_id "HGNC:30430" ; level 2 ; orig_coord_info "chr19,4338652,4338753,-" ; protein_id "ENSP00000471052.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "AC024257.2--STAP2^ENST00000594605.6" ; transcript_name "STAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC079610.2--IKZF2 HAVANA gene 7237 23374 . + . FI_gene_label "IKZF2^ENSG00000030419.16" ; ID "AC079610.2--IKZF2^IKZF2^ENSG00000030419.16" ; exon_id "ENSE00003626229.1" ; exon_number 1 ; gene_id "AC079610.2--IKZF2^IKZF2^ENSG00000030419.16" ; gene_name IKZF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133005.7" ; havana_transcript "OTTHUMT00000256594.1" ; hgnc_id "HGNC:13177" ; level 2 ; orig_coord_info "chr2,213150181,213150183,-" ; protein_id "ENSP00000342876.2" ; tag basic appris_alternative_1 ; transcript_id "AC079610.2--IKZF2^ENST00000342002.6" ; transcript_name "IKZF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC079610.2--IKZF2 HAVANA mRNA 7237 23374 . + . FI_gene_label "IKZF2^ENSG00000030419.16" ; ID "AC079610.2--IKZF2^ENST00000342002.6" ; Parent "AC079610.2--IKZF2^IKZF2^ENSG00000030419.16" ; exon_id "ENSE00003626229.1" ; exon_number 1 ; gene_id "AC079610.2--IKZF2^IKZF2^ENSG00000030419.16" ; gene_name IKZF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133005.7" ; havana_transcript "OTTHUMT00000256594.1" ; hgnc_id "HGNC:13177" ; level 2 ; orig_coord_info "chr2,213150181,213150183,-" ; protein_id "ENSP00000342876.2" ; tag basic appris_alternative_1 ; transcript_id "AC079610.2--IKZF2^ENST00000342002.6" ; transcript_name "IKZF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC079781.4--ASNS ENSEMBL gene 4220 16952 . + . FI_gene_label "ASNS^ENSG00000070669.17" ; ID "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; ccdsid "CCDS5652.1" ; exon_id "ENSE00001212450.2" ; exon_number 4 ; gene_id "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; gene_name ASNS ; gene_type protein_coding ; havana_gene "OTTHUMG00000022892.14" ; hgnc_id "HGNC:753" ; level 3 ; orig_coord_info "chr7,97868908,97869156,-" ; protein_id "ENSP00000175506.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AC079781.4--ASNS^ENST00000175506.8" ; transcript_name "ASNS-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC079781.4--ASNS ENSEMBL mRNA 4220 16952 . + . FI_gene_label "ASNS^ENSG00000070669.17" ; ID "AC079781.4--ASNS^ENST00000175506.8" ; Parent "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; ccdsid "CCDS5652.1" ; exon_id "ENSE00001212450.2" ; exon_number 4 ; gene_id "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; gene_name ASNS ; gene_type protein_coding ; havana_gene "OTTHUMG00000022892.14" ; hgnc_id "HGNC:753" ; level 3 ; orig_coord_info "chr7,97868908,97869156,-" ; protein_id "ENSP00000175506.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AC079781.4--ASNS^ENST00000175506.8" ; transcript_name "ASNS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC099842.1--SNX29 HAVANA gene 28415 31950 . + . FI_gene_label "SNX29^ENSG00000048471.14" ; ID "AC099842.1--SNX29^SNX29^ENSG00000048471.14" ; exon_id "ENSE00002616399.1" ; exon_number 1 ; gene_id "AC099842.1--SNX29^SNX29^ENSG00000048471.14" ; gene_name SNX29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129827.4" ; havana_transcript "OTTHUMT00000422625.1" ; hgnc_id "HGNC:30542" ; level 2 ; orig_coord_info "chr16,12356253,12356279,+" ; protein_id "ENSP00000455327.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AC099842.1--SNX29^ENST00000562510.1" ; transcript_name "SNX29-201" ; transcript_support_level 3 ; transcript_type protein_coding
AC099842.1--SNX29 HAVANA mRNA 28415 31950 . + . FI_gene_label "SNX29^ENSG00000048471.14" ; ID "AC099842.1--SNX29^ENST00000562510.1" ; Parent "AC099842.1--SNX29^SNX29^ENSG00000048471.14" ; exon_id "ENSE00002616399.1" ; exon_number 1 ; gene_id "AC099842.1--SNX29^SNX29^ENSG00000048471.14" ; gene_name SNX29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129827.4" ; havana_transcript "OTTHUMT00000422625.1" ; hgnc_id "HGNC:30542" ; level 2 ; orig_coord_info "chr16,12356253,12356279,+" ; protein_id "ENSP00000455327.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AC099842.1--SNX29^ENST00000562510.1" ; transcript_name "SNX29-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
ADCY9--CREBBP HAVANA gene 26803 69870 . + . FI_gene_label "CREBBP^ENSG00000005339.15" ; ID "ADCY9--CREBBP^CREBBP^ENSG00000005339.15" ; ccdsid "CCDS10509.1" ; exon_id "ENSE00001871332.3" ; exon_number 1 ; gene_id "ADCY9--CREBBP^CREBBP^ENSG00000005339.15" ; gene_name CREBBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000129431.7" ; havana_transcript "OTTHUMT00000251591.3" ; hgnc_id "HGNC:2348" ; level 2 ; orig_coord_info "chr16,3879832,3879916,-" ; protein_id "ENSP00000262367.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADCY9--CREBBP^ENST00000262367.10" ; transcript_name "CREBBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADCY9--CREBBP HAVANA mRNA 26803 69870 . + . FI_gene_label "CREBBP^ENSG00000005339.15" ; ID "ADCY9--CREBBP^ENST00000262367.10" ; Parent "ADCY9--CREBBP^CREBBP^ENSG00000005339.15" ; ccdsid "CCDS10509.1" ; exon_id "ENSE00001871332.3" ; exon_number 1 ; gene_id "ADCY9--CREBBP^CREBBP^ENSG00000005339.15" ; gene_name CREBBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000129431.7" ; havana_transcript "OTTHUMT00000251591.3" ; hgnc_id "HGNC:2348" ; level 2 ; orig_coord_info "chr16,3879832,3879916,-" ; protein_id "ENSP00000262367.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADCY9--CREBBP^ENST00000262367.10" ; transcript_name "CREBBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADCY9--CREBBP HAVANA gene 1001 22672 . + . FI_gene_label "ADCY9^ENSG00000162104.10" ; ID "ADCY9--CREBBP^ADCY9^ENSG00000162104.10" ; ccdsid "CCDS32382.1" ; exon_id "ENSE00001062629.1" ; exon_number 2 ; gene_id "ADCY9--CREBBP^ADCY9^ENSG00000162104.10" ; gene_name ADCY9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177612.3" ; havana_transcript "OTTHUMT00000438076.2" ; hgnc_id "HGNC:240" ; level 2 ; orig_coord_info "chr16,4113750,4115442,-" ; protein_id "ENSP00000294016.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADCY9--CREBBP^ENST00000294016.8" ; transcript_name "ADCY9-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADCY9--CREBBP HAVANA mRNA 1001 22672 . + . FI_gene_label "ADCY9^ENSG00000162104.10" ; ID "ADCY9--CREBBP^ENST00000294016.8" ; Parent "ADCY9--CREBBP^ADCY9^ENSG00000162104.10" ; ccdsid "CCDS32382.1" ; exon_id "ENSE00001062629.1" ; exon_number 2 ; gene_id "ADCY9--CREBBP^ADCY9^ENSG00000162104.10" ; gene_name ADCY9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177612.3" ; havana_transcript "OTTHUMT00000438076.2" ; hgnc_id "HGNC:240" ; level 2 ; orig_coord_info "chr16,4113750,4115442,-" ; protein_id "ENSP00000294016.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADCY9--CREBBP^ENST00000294016.8" ; transcript_name "ADCY9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AVL9--AC006398.1 HAVANA gene 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--AC006398.1^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--AC006398.1^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--AC006398.1^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
AVL9--AC006398.1 HAVANA mRNA 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--AC006398.1^ENST00000318709.9" ; Parent "AVL9--AC006398.1^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--AC006398.1^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--AC006398.1^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AVL9--AC006466.1 HAVANA gene 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--AC006466.1^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--AC006466.1^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--AC006466.1^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
AVL9--AC006466.1 HAVANA mRNA 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--AC006466.1^ENST00000318709.9" ; Parent "AVL9--AC006466.1^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--AC006466.1^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--AC006466.1^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AVL9--DPY19L2P3 HAVANA gene 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--DPY19L2P3^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--DPY19L2P3^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--DPY19L2P3^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
AVL9--DPY19L2P3 HAVANA mRNA 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--DPY19L2P3^ENST00000318709.9" ; Parent "AVL9--DPY19L2P3^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--DPY19L2P3^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--DPY19L2P3^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AVL9--GPR141 HAVANA gene 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--GPR141^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--GPR141^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--GPR141^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
AVL9--GPR141 HAVANA mRNA 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--GPR141^ENST00000318709.9" ; Parent "AVL9--GPR141^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--GPR141^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--GPR141^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AVL9--GPR141 ENSEMBL gene 39537 40454 . + . FI_gene_label "GPR141^ENSG00000187037.8" ; ID "AVL9--GPR141^GPR141^ENSG00000187037.8" ; ccdsid "CCDS5451.1" ; exon_id "ENSE00001335205.1" ; exon_number 1 ; gene_id "AVL9--GPR141^GPR141^ENSG00000187037.8" ; gene_name GPR141 ; gene_type protein_coding ; havana_gene "OTTHUMG00000102105.4" ; hgnc_id "HGNC:19997" ; level 3 ; orig_coord_info "chr7,37740394,37741308,+" ; protein_id "ENSP00000334540.1" ; tag basic appris_principal_1 CCDS ; transcript_id "AVL9--GPR141^ENST00000334425.1" ; transcript_name "GPR141-201" ; transcript_support_level NA ; transcript_type protein_coding
AVL9--GPR141 ENSEMBL mRNA 39537 40454 . + . FI_gene_label "GPR141^ENSG00000187037.8" ; ID "AVL9--GPR141^ENST00000334425.1" ; Parent "AVL9--GPR141^GPR141^ENSG00000187037.8" ; ccdsid "CCDS5451.1" ; exon_id "ENSE00001335205.1" ; exon_number 1 ; gene_id "AVL9--GPR141^GPR141^ENSG00000187037.8" ; gene_name GPR141 ; gene_type protein_coding ; havana_gene "OTTHUMG00000102105.4" ; hgnc_id "HGNC:19997" ; level 3 ; orig_coord_info "chr7,37740394,37741308,+" ; protein_id "ENSP00000334540.1" ; tag basic appris_principal_1 CCDS ; transcript_id "AVL9--GPR141^ENST00000334425.1" ; transcript_name "GPR141-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
AVL9--LINC02617 HAVANA gene 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--LINC02617^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--LINC02617^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--LINC02617^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
AVL9--LINC02617 HAVANA mRNA 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--LINC02617^ENST00000318709.9" ; Parent "AVL9--LINC02617^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--LINC02617^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--LINC02617^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AVL9--WIPF3 HAVANA gene 33704 47700 . + . FI_gene_label "WIPF3^ENSG00000122574.11" ; ID "AVL9--WIPF3^WIPF3^ENSG00000122574.11" ; ccdsid "CCDS56472.1" ; exon_id "ENSE00001587547.1" ; exon_number 2 ; gene_id "AVL9--WIPF3^WIPF3^ENSG00000122574.11" ; gene_name WIPF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152761.1" ; havana_transcript "OTTHUMT00000327705.1" ; hgnc_id "HGNC:22004" ; level 2 ; orig_coord_info "chr7,29834725,29834814,+" ; protein_id "ENSP00000242140.6" ; tag inferred_exon_combination basic appris_principal_2 CCDS ; transcript_id "AVL9--WIPF3^ENST00000242140.9" ; transcript_name "WIPF3-201" ; transcript_support_level 5 ; transcript_type protein_coding
AVL9--WIPF3 HAVANA mRNA 33704 47700 . + . FI_gene_label "WIPF3^ENSG00000122574.11" ; ID "AVL9--WIPF3^ENST00000242140.9" ; Parent "AVL9--WIPF3^WIPF3^ENSG00000122574.11" ; ccdsid "CCDS56472.1" ; exon_id "ENSE00001587547.1" ; exon_number 2 ; gene_id "AVL9--WIPF3^WIPF3^ENSG00000122574.11" ; gene_name WIPF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152761.1" ; havana_transcript "OTTHUMT00000327705.1" ; hgnc_id "HGNC:22004" ; level 2 ; orig_coord_info "chr7,29834725,29834814,+" ; protein_id "ENSP00000242140.6" ; tag inferred_exon_combination basic appris_principal_2 CCDS ; transcript_id "AVL9--WIPF3^ENST00000242140.9" ; transcript_name "WIPF3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AVL9--WIPF3 HAVANA gene 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--WIPF3^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--WIPF3^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--WIPF3^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
AVL9--WIPF3 HAVANA mRNA 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--WIPF3^ENST00000318709.9" ; Parent "AVL9--WIPF3^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--WIPF3^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--WIPF3^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
B4GALT5--SLA2 HAVANA gene 16222 24767 . + . FI_gene_label "SLA2^ENSG00000101082.14" ; ID "B4GALT5--SLA2^SLA2^ENSG00000101082.14" ; ccdsid "CCDS13282.1" ; exon_id "ENSE00001388358.1" ; exon_number 2 ; gene_id "B4GALT5--SLA2^SLA2^ENSG00000101082.14" ; gene_name SLA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032393.3" ; havana_transcript "OTTHUMT00000079037.3" ; hgnc_id "HGNC:17329" ; level 2 ; orig_coord_info "chr20,36641245,36641335,-" ; protein_id "ENSP00000262866.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "B4GALT5--SLA2^ENST00000262866.9" ; transcript_name "SLA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
B4GALT5--SLA2 HAVANA mRNA 16222 24767 . + . FI_gene_label "SLA2^ENSG00000101082.14" ; ID "B4GALT5--SLA2^ENST00000262866.9" ; Parent "B4GALT5--SLA2^SLA2^ENSG00000101082.14" ; ccdsid "CCDS13282.1" ; exon_id "ENSE00001388358.1" ; exon_number 2 ; gene_id "B4GALT5--SLA2^SLA2^ENSG00000101082.14" ; gene_name SLA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032393.3" ; havana_transcript "OTTHUMT00000079037.3" ; hgnc_id "HGNC:17329" ; level 2 ; orig_coord_info "chr20,36641245,36641335,-" ; protein_id "ENSP00000262866.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "B4GALT5--SLA2^ENST00000262866.9" ; transcript_name "SLA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B4GALT5--SLA2 HAVANA gene 1001 13221 . + . FI_gene_label "B4GALT5^ENSG00000158470.5" ; ID "B4GALT5--SLA2^B4GALT5^ENSG00000158470.5" ; ccdsid "CCDS13420.1" ; exon_id "ENSE00001455930.4" ; exon_number 1 ; gene_id "B4GALT5--SLA2^B4GALT5^ENSG00000158470.5" ; gene_name B4GALT5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033086.3" ; havana_transcript "OTTHUMT00000080543.3" ; hgnc_id "HGNC:928" ; level 2 ; orig_coord_info "chr20,49713576,49713690,-" ; protein_id "ENSP00000360776.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B4GALT5--SLA2^ENST00000371711.4" ; transcript_name "B4GALT5-201" ; transcript_support_level 1 ; transcript_type protein_coding
B4GALT5--SLA2 HAVANA mRNA 1001 13221 . + . FI_gene_label "B4GALT5^ENSG00000158470.5" ; ID "B4GALT5--SLA2^ENST00000371711.4" ; Parent "B4GALT5--SLA2^B4GALT5^ENSG00000158470.5" ; ccdsid "CCDS13420.1" ; exon_id "ENSE00001455930.4" ; exon_number 1 ; gene_id "B4GALT5--SLA2^B4GALT5^ENSG00000158470.5" ; gene_name B4GALT5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033086.3" ; havana_transcript "OTTHUMT00000080543.3" ; hgnc_id "HGNC:928" ; level 2 ; orig_coord_info "chr20,49713576,49713690,-" ; protein_id "ENSP00000360776.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B4GALT5--SLA2^ENST00000371711.4" ; transcript_name "B4GALT5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BRSK2--ANO3-AS1 HAVANA gene 1001 23786 . + . FI_gene_label "BRSK2^ENSG00000174672.16" ; ID "BRSK2--ANO3-AS1^BRSK2^ENSG00000174672.16" ; ccdsid "CCDS41590.1" ; exon_id "ENSE00001491123.2" ; exon_number 1 ; gene_id "BRSK2--ANO3-AS1^BRSK2^ENSG00000174672.16" ; gene_name BRSK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167089.4" ; havana_transcript "OTTHUMT00000393031.1" ; hgnc_id "HGNC:11405" ; level 2 ; orig_coord_info "chr11,1390285,1390375,+" ; protein_id "ENSP00000310697.9" ; tag basic appris_alternative_2 CCDS ; transcript_id "BRSK2--ANO3-AS1^ENST00000308219.13" ; transcript_name "BRSK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BRSK2--ANO3-AS1 HAVANA mRNA 1001 23786 . + . FI_gene_label "BRSK2^ENSG00000174672.16" ; ID "BRSK2--ANO3-AS1^ENST00000308219.13" ; Parent "BRSK2--ANO3-AS1^BRSK2^ENSG00000174672.16" ; ccdsid "CCDS41590.1" ; exon_id "ENSE00001491123.2" ; exon_number 1 ; gene_id "BRSK2--ANO3-AS1^BRSK2^ENSG00000174672.16" ; gene_name BRSK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167089.4" ; havana_transcript "OTTHUMT00000393031.1" ; hgnc_id "HGNC:11405" ; level 2 ; orig_coord_info "chr11,1390285,1390375,+" ; protein_id "ENSP00000310697.9" ; tag basic appris_alternative_2 CCDS ; transcript_id "BRSK2--ANO3-AS1^ENST00000308219.13" ; transcript_name "BRSK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C16orf72--AC099842.1 HAVANA gene 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--AC099842.1^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--AC099842.1^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--AC099842.1^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
C16orf72--AC099842.1 HAVANA mRNA 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--AC099842.1^ENST00000327827.12" ; Parent "C16orf72--AC099842.1^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--AC099842.1^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--AC099842.1^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C16orf72--AC100770.1 HAVANA gene 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--AC100770.1^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--AC100770.1^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--AC100770.1^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
C16orf72--AC100770.1 HAVANA mRNA 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--AC100770.1^ENST00000327827.12" ; Parent "C16orf72--AC100770.1^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--AC100770.1^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--AC100770.1^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C16orf72--AC138776.1 HAVANA gene 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--AC138776.1^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--AC138776.1^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--AC138776.1^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
C16orf72--AC138776.1 HAVANA mRNA 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--AC138776.1^ENST00000327827.12" ; Parent "C16orf72--AC138776.1^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--AC138776.1^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--AC138776.1^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C16orf72--FRG1GP HAVANA gene 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--FRG1GP^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--FRG1GP^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--FRG1GP^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
C16orf72--FRG1GP HAVANA mRNA 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--FRG1GP^ENST00000327827.12" ; Parent "C16orf72--FRG1GP^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--FRG1GP^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--FRG1GP^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C16orf72--LINC02686 HAVANA gene 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--LINC02686^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--LINC02686^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--LINC02686^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
C16orf72--LINC02686 HAVANA mRNA 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--LINC02686^ENST00000327827.12" ; Parent "C16orf72--LINC02686^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--LINC02686^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--LINC02686^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C16orf72--LINC02699 HAVANA gene 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--LINC02699^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--LINC02699^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--LINC02699^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
C16orf72--LINC02699 HAVANA mRNA 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--LINC02699^ENST00000327827.12" ; Parent "C16orf72--LINC02699^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--LINC02699^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--LINC02699^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C16orf72--NAP1L4P1 HAVANA gene 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--NAP1L4P1^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--NAP1L4P1^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--NAP1L4P1^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
C16orf72--NAP1L4P1 HAVANA mRNA 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--NAP1L4P1^ENST00000327827.12" ; Parent "C16orf72--NAP1L4P1^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--NAP1L4P1^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--NAP1L4P1^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C16orf72--SNX29 HAVANA gene 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--SNX29^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--SNX29^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--SNX29^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
C16orf72--SNX29 HAVANA mRNA 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--SNX29^ENST00000327827.12" ; Parent "C16orf72--SNX29^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--SNX29^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--SNX29^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C16orf72--SNX29 HAVANA gene 45343 48878 . + . FI_gene_label "SNX29^ENSG00000048471.14" ; ID "C16orf72--SNX29^SNX29^ENSG00000048471.14" ; exon_id "ENSE00002616399.1" ; exon_number 1 ; gene_id "C16orf72--SNX29^SNX29^ENSG00000048471.14" ; gene_name SNX29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129827.4" ; havana_transcript "OTTHUMT00000422625.1" ; hgnc_id "HGNC:30542" ; level 2 ; orig_coord_info "chr16,12356253,12356279,+" ; protein_id "ENSP00000455327.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "C16orf72--SNX29^ENST00000562510.1" ; transcript_name "SNX29-201" ; transcript_support_level 3 ; transcript_type protein_coding
C16orf72--SNX29 HAVANA mRNA 45343 48878 . + . FI_gene_label "SNX29^ENSG00000048471.14" ; ID "C16orf72--SNX29^ENST00000562510.1" ; Parent "C16orf72--SNX29^SNX29^ENSG00000048471.14" ; exon_id "ENSE00002616399.1" ; exon_number 1 ; gene_id "C16orf72--SNX29^SNX29^ENSG00000048471.14" ; gene_name SNX29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129827.4" ; havana_transcript "OTTHUMT00000422625.1" ; hgnc_id "HGNC:30542" ; level 2 ; orig_coord_info "chr16,12356253,12356279,+" ; protein_id "ENSP00000455327.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "C16orf72--SNX29^ENST00000562510.1" ; transcript_name "SNX29-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
C1QTNF3--AMACR HAVANA gene 1001 8952 . + . FI_gene_label "C1QTNF3^ENSG00000082196.21" ; ID "C1QTNF3--AMACR^C1QTNF3^ENSG00000082196.21" ; ccdsid "CCDS3904.1" ; exon_id "ENSE00001898423.1" ; exon_number 1 ; gene_id "C1QTNF3--AMACR^C1QTNF3^ENSG00000082196.21" ; gene_name C1QTNF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090735.5" ; havana_transcript "OTTHUMT00000207469.1" ; hgnc_id "HGNC:14326" ; level 2 ; orig_coord_info "chr5,34043042,34043125,-" ; protein_id "ENSP00000231338.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "C1QTNF3--AMACR^ENST00000231338.7" ; transcript_name "C1QTNF3-201" ; transcript_support_level 1 ; transcript_type protein_coding
C1QTNF3--AMACR HAVANA mRNA 1001 8952 . + . FI_gene_label "C1QTNF3^ENSG00000082196.21" ; ID "C1QTNF3--AMACR^ENST00000231338.7" ; Parent "C1QTNF3--AMACR^C1QTNF3^ENSG00000082196.21" ; ccdsid "CCDS3904.1" ; exon_id "ENSE00001898423.1" ; exon_number 1 ; gene_id "C1QTNF3--AMACR^C1QTNF3^ENSG00000082196.21" ; gene_name C1QTNF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090735.5" ; havana_transcript "OTTHUMT00000207469.1" ; hgnc_id "HGNC:14326" ; level 2 ; orig_coord_info "chr5,34043042,34043125,-" ; protein_id "ENSP00000231338.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "C1QTNF3--AMACR^ENST00000231338.7" ; transcript_name "C1QTNF3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C1QTNF3--AMACR HAVANA gene 13602 24394 . + . FI_gene_label "AMACR^ENSG00000242110.8" ; ID "C1QTNF3--AMACR^AMACR^ENSG00000242110.8" ; ccdsid "CCDS3902.1" ; exon_id "ENSE00001953485.2" ; exon_number 1 ; gene_id "C1QTNF3--AMACR^AMACR^ENSG00000242110.8" ; gene_name AMACR ; gene_type protein_coding ; havana_gene "OTTHUMG00000090734.3" ; havana_transcript "OTTHUMT00000207467.2" ; hgnc_id "HGNC:451" ; level 2 ; orig_coord_info "chr5,34007773,34008019,-" ; protein_id "ENSP00000334424.6" ; tag basic MANE_Select CCDS ; transcript_id "C1QTNF3--AMACR^ENST00000335606.11" ; transcript_name "AMACR-201" ; transcript_support_level 1 ; transcript_type protein_coding
C1QTNF3--AMACR HAVANA mRNA 13602 24394 . + . FI_gene_label "AMACR^ENSG00000242110.8" ; ID "C1QTNF3--AMACR^ENST00000335606.11" ; Parent "C1QTNF3--AMACR^AMACR^ENSG00000242110.8" ; ccdsid "CCDS3902.1" ; exon_id "ENSE00001953485.2" ; exon_number 1 ; gene_id "C1QTNF3--AMACR^AMACR^ENSG00000242110.8" ; gene_name AMACR ; gene_type protein_coding ; havana_gene "OTTHUMG00000090734.3" ; havana_transcript "OTTHUMT00000207467.2" ; hgnc_id "HGNC:451" ; level 2 ; orig_coord_info "chr5,34007773,34008019,-" ; protein_id "ENSP00000334424.6" ; tag basic MANE_Select CCDS ; transcript_id "C1QTNF3--AMACR^ENST00000335606.11" ; transcript_name "AMACR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--AC091196.1 HAVANA gene 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--AC091196.1^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--AC091196.1^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--AC091196.1^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--AC091196.1 HAVANA mRNA 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--AC091196.1^ENST00000278224.13" ; Parent "CARS1--AC091196.1^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--AC091196.1^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--AC091196.1^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--CD101 ENSEMBL gene 29380 41260 . + . FI_gene_label "CD101^ENSG00000134256.12" ; ID "CARS1--CD101^CD101^ENSG00000134256.12" ; ccdsid "CCDS891.1" ; exon_id "ENSE00001450109.4" ; exon_number 1 ; gene_id "CARS1--CD101^CD101^ENSG00000134256.12" ; gene_name CD101 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012029.1" ; hgnc_id "HGNC:5949" ; level 3 ; orig_coord_info "chr1,117001818,117001860,+" ; protein_id "ENSP00000256652.4" ; tag basic appris_principal_1 CCDS ; transcript_id "CARS1--CD101^ENST00000256652.8" ; transcript_name "CD101-201" ; transcript_support_level 2 ; transcript_type protein_coding
CARS1--CD101 ENSEMBL mRNA 29380 41260 . + . FI_gene_label "CD101^ENSG00000134256.12" ; ID "CARS1--CD101^ENST00000256652.8" ; Parent "CARS1--CD101^CD101^ENSG00000134256.12" ; ccdsid "CCDS891.1" ; exon_id "ENSE00001450109.4" ; exon_number 1 ; gene_id "CARS1--CD101^CD101^ENSG00000134256.12" ; gene_name CD101 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012029.1" ; hgnc_id "HGNC:5949" ; level 3 ; orig_coord_info "chr1,117001818,117001860,+" ; protein_id "ENSP00000256652.4" ; tag basic appris_principal_1 CCDS ; transcript_id "CARS1--CD101^ENST00000256652.8" ; transcript_name "CD101-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CARS1--CD101 HAVANA gene 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--CD101^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--CD101^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--CD101^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--CD101 HAVANA mRNA 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--CD101^ENST00000278224.13" ; Parent "CARS1--CD101^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--CD101^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--CD101^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--LINC02683 HAVANA gene 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--LINC02683^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--LINC02683^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--LINC02683^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--LINC02683 HAVANA mRNA 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--LINC02683^ENST00000278224.13" ; Parent "CARS1--LINC02683^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--LINC02683^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--LINC02683^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--MOB2 HAVANA gene 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--MOB2^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--MOB2^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--MOB2^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--MOB2 HAVANA mRNA 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--MOB2^ENST00000278224.13" ; Parent "CARS1--MOB2^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--MOB2^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--MOB2^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--MOB2 HAVANA gene 30551 38056 . + . FI_gene_label "MOB2^ENSG00000182208.14" ; ID "CARS1--MOB2^MOB2^ENSG00000182208.14" ; ccdsid "CCDS53591.1" ; exon_id "ENSE00002192006.2" ; exon_number 1 ; gene_id "CARS1--MOB2^MOB2^ENSG00000182208.14" ; gene_name MOB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165545.3" ; havana_transcript "OTTHUMT00000384770.2" ; hgnc_id "HGNC:24904" ; level 1 ; orig_coord_info "chr11,1486447,1486556,-" ; protein_id "ENSP00000328694.6" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "CARS1--MOB2^ENST00000329957.7" ; transcript_name "MOB2-201" ; transcript_support_level 2 ; transcript_type protein_coding
CARS1--MOB2 HAVANA mRNA 30551 38056 . + . FI_gene_label "MOB2^ENSG00000182208.14" ; ID "CARS1--MOB2^ENST00000329957.7" ; Parent "CARS1--MOB2^MOB2^ENSG00000182208.14" ; ccdsid "CCDS53591.1" ; exon_id "ENSE00002192006.2" ; exon_number 1 ; gene_id "CARS1--MOB2^MOB2^ENSG00000182208.14" ; gene_name MOB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165545.3" ; havana_transcript "OTTHUMT00000384770.2" ; hgnc_id "HGNC:24904" ; level 1 ; orig_coord_info "chr11,1486447,1486556,-" ; protein_id "ENSP00000328694.6" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "CARS1--MOB2^ENST00000329957.7" ; transcript_name "MOB2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CARS1--PTGFRN HAVANA gene 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--PTGFRN^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--PTGFRN^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--PTGFRN^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--PTGFRN HAVANA mRNA 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--PTGFRN^ENST00000278224.13" ; Parent "CARS1--PTGFRN^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--PTGFRN^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--PTGFRN^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--PTGFRN HAVANA gene 29380 43867 . + . FI_gene_label "PTGFRN^ENSG00000134247.10" ; ID "CARS1--PTGFRN^PTGFRN^ENSG00000134247.10" ; ccdsid "CCDS890.1" ; exon_id "ENSE00001514453.3" ; exon_number 1 ; gene_id "CARS1--PTGFRN^PTGFRN^ENSG00000134247.10" ; gene_name PTGFRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000012028.2" ; havana_transcript "OTTHUMT00000033271.2" ; hgnc_id "HGNC:9601" ; level 2 ; orig_coord_info "chr1,116910204,116910252,+" ; protein_id "ENSP00000376899.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CARS1--PTGFRN^ENST00000393203.3" ; transcript_name "PTGFRN-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--PTGFRN HAVANA mRNA 29380 43867 . + . FI_gene_label "PTGFRN^ENSG00000134247.10" ; ID "CARS1--PTGFRN^ENST00000393203.3" ; Parent "CARS1--PTGFRN^PTGFRN^ENSG00000134247.10" ; ccdsid "CCDS890.1" ; exon_id "ENSE00001514453.3" ; exon_number 1 ; gene_id "CARS1--PTGFRN^PTGFRN^ENSG00000134247.10" ; gene_name PTGFRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000012028.2" ; havana_transcript "OTTHUMT00000033271.2" ; hgnc_id "HGNC:9601" ; level 2 ; orig_coord_info "chr1,116910204,116910252,+" ; protein_id "ENSP00000376899.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CARS1--PTGFRN^ENST00000393203.3" ; transcript_name "PTGFRN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--SPON1 HAVANA gene 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--SPON1^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--SPON1^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--SPON1^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--SPON1 HAVANA mRNA 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--SPON1^ENST00000278224.13" ; Parent "CARS1--SPON1^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--SPON1^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--SPON1^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--SPON1 HAVANA gene 29380 48411 . + . FI_gene_label "SPON1^ENSG00000262655.4" ; ID "CARS1--SPON1^SPON1^ENSG00000262655.4" ; ccdsid "CCDS73262.1" ; exon_id "ENSE00002638217.3" ; exon_number 1 ; gene_id "CARS1--SPON1^SPON1^ENSG00000262655.4" ; gene_name SPON1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181576.4" ; havana_transcript "OTTHUMT00000456656.4" ; hgnc_id "HGNC:11252" ; level 2 ; orig_coord_info "chr11,13962905,13963142,+" ; protein_id "ENSP00000460236.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CARS1--SPON1^ENST00000576479.4" ; transcript_name "SPON1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--SPON1 HAVANA mRNA 29380 48411 . + . FI_gene_label "SPON1^ENSG00000262655.4" ; ID "CARS1--SPON1^ENST00000576479.4" ; Parent "CARS1--SPON1^SPON1^ENSG00000262655.4" ; ccdsid "CCDS73262.1" ; exon_id "ENSE00002638217.3" ; exon_number 1 ; gene_id "CARS1--SPON1^SPON1^ENSG00000262655.4" ; gene_name SPON1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181576.4" ; havana_transcript "OTTHUMT00000456656.4" ; hgnc_id "HGNC:11252" ; level 2 ; orig_coord_info "chr11,13962905,13963142,+" ; protein_id "ENSP00000460236.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CARS1--SPON1^ENST00000576479.4" ; transcript_name "SPON1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--TRPM2 HAVANA gene 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--TRPM2^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--TRPM2^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--TRPM2^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--TRPM2 HAVANA mRNA 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--TRPM2^ENST00000278224.13" ; Parent "CARS1--TRPM2^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--TRPM2^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--TRPM2^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--TRPM2 HAVANA gene 31004 64978 . + . FI_gene_label "TRPM2^ENSG00000142185.16" ; ID "CARS1--TRPM2^TRPM2^ENSG00000142185.16" ; exon_id "ENSE00001877735.1" ; exon_number 1 ; gene_id "CARS1--TRPM2^TRPM2^ENSG00000142185.16" ; gene_name TRPM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040840.5" ; havana_transcript "OTTHUMT00000098087.1" ; hgnc_id "HGNC:12339" ; level 2 ; orig_coord_info "chr21,44353701,44353865,+" ; protein_id "ENSP00000300481.9" ; tag basic ; transcript_id "CARS1--TRPM2^ENST00000300481.13" ; transcript_name "TRPM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--TRPM2 HAVANA mRNA 31004 64978 . + . FI_gene_label "TRPM2^ENSG00000142185.16" ; ID "CARS1--TRPM2^ENST00000300481.13" ; Parent "CARS1--TRPM2^TRPM2^ENSG00000142185.16" ; exon_id "ENSE00001877735.1" ; exon_number 1 ; gene_id "CARS1--TRPM2^TRPM2^ENSG00000142185.16" ; gene_name TRPM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040840.5" ; havana_transcript "OTTHUMT00000098087.1" ; hgnc_id "HGNC:12339" ; level 2 ; orig_coord_info "chr21,44353701,44353865,+" ; protein_id "ENSP00000300481.9" ; tag basic ; transcript_id "CARS1--TRPM2^ENST00000300481.13" ; transcript_name "TRPM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CD101--DLGAP2 ENSEMBL gene 1001 12881 . + . FI_gene_label "CD101^ENSG00000134256.12" ; ID "CD101--DLGAP2^CD101^ENSG00000134256.12" ; ccdsid "CCDS891.1" ; exon_id "ENSE00001450109.4" ; exon_number 1 ; gene_id "CD101--DLGAP2^CD101^ENSG00000134256.12" ; gene_name CD101 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012029.1" ; hgnc_id "HGNC:5949" ; level 3 ; orig_coord_info "chr1,117001818,117001860,+" ; protein_id "ENSP00000256652.4" ; tag basic appris_principal_1 CCDS ; transcript_id "CD101--DLGAP2^ENST00000256652.8" ; transcript_name "CD101-201" ; transcript_support_level 2 ; transcript_type protein_coding
CD101--DLGAP2 ENSEMBL mRNA 1001 12881 . + . FI_gene_label "CD101^ENSG00000134256.12" ; ID "CD101--DLGAP2^ENST00000256652.8" ; Parent "CD101--DLGAP2^CD101^ENSG00000134256.12" ; ccdsid "CCDS891.1" ; exon_id "ENSE00001450109.4" ; exon_number 1 ; gene_id "CD101--DLGAP2^CD101^ENSG00000134256.12" ; gene_name CD101 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012029.1" ; hgnc_id "HGNC:5949" ; level 3 ; orig_coord_info "chr1,117001818,117001860,+" ; protein_id "ENSP00000256652.4" ; tag basic appris_principal_1 CCDS ; transcript_id "CD101--DLGAP2^ENST00000256652.8" ; transcript_name "CD101-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CD101--DLGAP2 HAVANA gene 20291 52174 . + . FI_gene_label "DLGAP2^ENSG00000198010.13" ; ID "CD101--DLGAP2^DLGAP2^ENSG00000198010.13" ; exon_id "ENSE00003796184.1" ; exon_number 1 ; gene_id "CD101--DLGAP2^DLGAP2^ENSG00000198010.13" ; gene_name DLGAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163599.5" ; havana_transcript "OTTHUMT00000489963.1" ; hgnc_id "HGNC:2906" ; level 2 ; orig_coord_info "chr8,822179,822193,+" ; protein_id "ENSP00000400258.3" ; tag inferred_transcript_model basic appris_alternative_2 ; transcript_id "CD101--DLGAP2^ENST00000421627.7" ; transcript_name "DLGAP2-201" ; transcript_support_level 5 ; transcript_type protein_coding
CD101--DLGAP2 HAVANA mRNA 20291 52174 . + . FI_gene_label "DLGAP2^ENSG00000198010.13" ; ID "CD101--DLGAP2^ENST00000421627.7" ; Parent "CD101--DLGAP2^DLGAP2^ENSG00000198010.13" ; exon_id "ENSE00003796184.1" ; exon_number 1 ; gene_id "CD101--DLGAP2^DLGAP2^ENSG00000198010.13" ; gene_name DLGAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163599.5" ; havana_transcript "OTTHUMT00000489963.1" ; hgnc_id "HGNC:2906" ; level 2 ; orig_coord_info "chr8,822179,822193,+" ; protein_id "ENSP00000400258.3" ; tag inferred_transcript_model basic appris_alternative_2 ; transcript_id "CD101--DLGAP2^ENST00000421627.7" ; transcript_name "DLGAP2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CDHR5--MAB21L3 HAVANA gene 1910 8515 . + . FI_gene_label "CDHR5^ENSG00000099834.19" ; ID "CDHR5--MAB21L3^CDHR5^ENSG00000099834.19" ; ccdsid "CCDS7708.1" ; exon_id "ENSE00002160589.1" ; exon_number 1 ; gene_id "CDHR5--MAB21L3^CDHR5^ENSG00000099834.19" ; gene_name CDHR5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132018.6" ; havana_transcript "OTTHUMT00000255024.3" ; hgnc_id "HGNC:7521" ; level 2 ; orig_coord_info "chr11,624818,624902,-" ; protein_id "ENSP00000345726.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "CDHR5--MAB21L3^ENST00000349570.11" ; transcript_name "CDHR5-201" ; transcript_support_level 1 ; transcript_type protein_coding
CDHR5--MAB21L3 HAVANA mRNA 1910 8515 . + . FI_gene_label "CDHR5^ENSG00000099834.19" ; ID "CDHR5--MAB21L3^ENST00000349570.11" ; Parent "CDHR5--MAB21L3^CDHR5^ENSG00000099834.19" ; ccdsid "CCDS7708.1" ; exon_id "ENSE00002160589.1" ; exon_number 1 ; gene_id "CDHR5--MAB21L3^CDHR5^ENSG00000099834.19" ; gene_name CDHR5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132018.6" ; havana_transcript "OTTHUMT00000255024.3" ; hgnc_id "HGNC:7521" ; level 2 ; orig_coord_info "chr11,624818,624902,-" ; protein_id "ENSP00000345726.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "CDHR5--MAB21L3^ENST00000349570.11" ; transcript_name "CDHR5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CDHR5--MAB21L3 HAVANA gene 12195 20712 . + . FI_gene_label "MAB21L3^ENSG00000173212.4" ; ID "CDHR5--MAB21L3^MAB21L3^ENSG00000173212.4" ; ccdsid "CCDS886.1" ; exon_id "ENSE00001450187.1" ; exon_number 2 ; gene_id "CDHR5--MAB21L3^MAB21L3^ENSG00000173212.4" ; gene_name MAB21L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012110.3" ; havana_transcript "OTTHUMT00000033486.1" ; hgnc_id "HGNC:26787" ; level 2 ; orig_coord_info "chr1,116112616,116112663,+" ; protein_id "ENSP00000358512.3" ; tag basic appris_principal_1 CCDS ; transcript_id "CDHR5--MAB21L3^ENST00000369500.3" ; transcript_name "MAB21L3-201" ; transcript_support_level 2 ; transcript_type protein_coding
CDHR5--MAB21L3 HAVANA mRNA 12195 20712 . + . FI_gene_label "MAB21L3^ENSG00000173212.4" ; ID "CDHR5--MAB21L3^ENST00000369500.3" ; Parent "CDHR5--MAB21L3^MAB21L3^ENSG00000173212.4" ; ccdsid "CCDS886.1" ; exon_id "ENSE00001450187.1" ; exon_number 2 ; gene_id "CDHR5--MAB21L3^MAB21L3^ENSG00000173212.4" ; gene_name MAB21L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012110.3" ; havana_transcript "OTTHUMT00000033486.1" ; hgnc_id "HGNC:26787" ; level 2 ; orig_coord_info "chr1,116112616,116112663,+" ; protein_id "ENSP00000358512.3" ; tag basic appris_principal_1 CCDS ; transcript_id "CDHR5--MAB21L3^ENST00000369500.3" ; transcript_name "MAB21L3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CORO7--TMEM114 HAVANA gene 3789 26539 . + . FI_gene_label "CORO7^ENSG00000262246.6" ; ID "CORO7--TMEM114^CORO7^ENSG00000262246.6" ; ccdsid "CCDS10513.1" ; exon_id "ENSE00002209549.1" ; exon_number 1 ; gene_id "CORO7--TMEM114^CORO7^ENSG00000262246.6" ; gene_name CORO7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129465.6" ; havana_transcript "OTTHUMT00000251628.3" ; hgnc_id "HGNC:26161" ; level 2 ; orig_coord_info "chr16,4416459,4416518,-" ; protein_id "ENSP00000251166.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CORO7--TMEM114^ENST00000251166.9" ; transcript_name "CORO7-201" ; transcript_support_level 1 ; transcript_type protein_coding
CORO7--TMEM114 HAVANA mRNA 3789 26539 . + . FI_gene_label "CORO7^ENSG00000262246.6" ; ID "CORO7--TMEM114^ENST00000251166.9" ; Parent "CORO7--TMEM114^CORO7^ENSG00000262246.6" ; ccdsid "CCDS10513.1" ; exon_id "ENSE00002209549.1" ; exon_number 1 ; gene_id "CORO7--TMEM114^CORO7^ENSG00000262246.6" ; gene_name CORO7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129465.6" ; havana_transcript "OTTHUMT00000251628.3" ; hgnc_id "HGNC:26161" ; level 2 ; orig_coord_info "chr16,4416459,4416518,-" ; protein_id "ENSP00000251166.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CORO7--TMEM114^ENST00000251166.9" ; transcript_name "CORO7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CORO7--TMEM114 HAVANA gene 29540 33242 . + . FI_gene_label "TMEM114^ENSG00000232258.6" ; ID "CORO7--TMEM114^TMEM114^ENSG00000232258.6" ; ccdsid "CCDS76819.1" ; exon_id "ENSE00003755294.1" ; exon_number 2 ; gene_id "CORO7--TMEM114^TMEM114^ENSG00000232258.6" ; gene_name TMEM114 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172868.2" ; havana_transcript "OTTHUMT00000479051.1" ; hgnc_id "HGNC:33227" ; level 2 ; orig_coord_info "chr16,8589213,8589270,-" ; protein_id "ENSP00000454261.2" ; tag basic CCDS ; transcript_id "CORO7--TMEM114^ENST00000568335.3" ; transcript_name "TMEM114-202" ; transcript_support_level 3 ; transcript_type protein_coding
CORO7--TMEM114 HAVANA mRNA 29540 33242 . + . FI_gene_label "TMEM114^ENSG00000232258.6" ; ID "CORO7--TMEM114^ENST00000568335.3" ; Parent "CORO7--TMEM114^TMEM114^ENSG00000232258.6" ; ccdsid "CCDS76819.1" ; exon_id "ENSE00003755294.1" ; exon_number 2 ; gene_id "CORO7--TMEM114^TMEM114^ENSG00000232258.6" ; gene_name TMEM114 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172868.2" ; havana_transcript "OTTHUMT00000479051.1" ; hgnc_id "HGNC:33227" ; level 2 ; orig_coord_info "chr16,8589213,8589270,-" ; protein_id "ENSP00000454261.2" ; tag basic CCDS ; transcript_id "CORO7--TMEM114^ENST00000568335.3" ; transcript_name "TMEM114-202" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRYZL2P--SEC16B HAVANA mRNA 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^ENST00000308284.10" ; Parent "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DNAJC24--OLFM5P HAVANA gene 13307 17219 . + . FI_gene_label "DNAJC24^ENSG00000170946.15" ; ID "DNAJC24--OLFM5P^DNAJC24^ENSG00000170946.15" ; exon_id "ENSE00003540278.1" ; exon_number 1 ; gene_id "DNAJC24--OLFM5P^DNAJC24^ENSG00000170946.15" ; gene_name DNAJC24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133712.4" ; havana_transcript "OTTHUMT00000388490.1" ; hgnc_id "HGNC:26979" ; level 2 ; orig_coord_info "chr11,31426287,31426355,+" ; protein_id "ENSP00000379279.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "DNAJC24--OLFM5P^ENST00000395949.2" ; transcript_name "DNAJC24-201" ; transcript_support_level 3 ; transcript_type nonsense_mediated_decay
DNAJC24--OLFM5P HAVANA mRNA 13307 17219 . + . FI_gene_label "DNAJC24^ENSG00000170946.15" ; ID "DNAJC24--OLFM5P^ENST00000395949.2" ; Parent "DNAJC24--OLFM5P^DNAJC24^ENSG00000170946.15" ; exon_id "ENSE00003540278.1" ; exon_number 1 ; gene_id "DNAJC24--OLFM5P^DNAJC24^ENSG00000170946.15" ; gene_name DNAJC24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133712.4" ; havana_transcript "OTTHUMT00000388490.1" ; hgnc_id "HGNC:26979" ; level 2 ; orig_coord_info "chr11,31426287,31426355,+" ; protein_id "ENSP00000379279.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "DNAJC24--OLFM5P^ENST00000395949.2" ; transcript_name "DNAJC24-201" ; transcript_support_level 3 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
DTNA--COX7B2 HAVANA gene 25837 48695 . + . FI_gene_label "DTNA^ENSG00000134769.22" ; ID "DTNA--COX7B2^DTNA^ENSG00000134769.22" ; ccdsid "CCDS56062.1" ; exon_id "ENSE00003609645.1" ; exon_number 2 ; gene_id "DTNA--COX7B2^DTNA^ENSG00000134769.22" ; gene_name DTNA ; gene_type protein_coding ; havana_gene "OTTHUMG00000132309.6" ; havana_transcript "OTTHUMT00000411818.1" ; hgnc_id "HGNC:3057" ; level 2 ; orig_coord_info "chr18,34820869,34820915,+" ; protein_id "ENSP00000269192.7" ; tag basic CCDS ; transcript_id "DTNA--COX7B2^ENST00000269192.11" ; transcript_name "DTNA-201" ; transcript_support_level 2 ; transcript_type protein_coding
DTNA--COX7B2 HAVANA mRNA 25837 48695 . + . FI_gene_label "DTNA^ENSG00000134769.22" ; ID "DTNA--COX7B2^ENST00000269192.11" ; Parent "DTNA--COX7B2^DTNA^ENSG00000134769.22" ; ccdsid "CCDS56062.1" ; exon_id "ENSE00003609645.1" ; exon_number 2 ; gene_id "DTNA--COX7B2^DTNA^ENSG00000134769.22" ; gene_name DTNA ; gene_type protein_coding ; havana_gene "OTTHUMG00000132309.6" ; havana_transcript "OTTHUMT00000411818.1" ; hgnc_id "HGNC:3057" ; level 2 ; orig_coord_info "chr18,34820869,34820915,+" ; protein_id "ENSP00000269192.7" ; tag basic CCDS ; transcript_id "DTNA--COX7B2^ENST00000269192.11" ; transcript_name "DTNA-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DTNA--COX7B2 HAVANA gene 55546 60362 . + . FI_gene_label "COX7B2^ENSG00000170516.17" ; ID "DTNA--COX7B2^COX7B2^ENSG00000170516.17" ; ccdsid "CCDS3472.2" ; exon_id "ENSE00001136419.3" ; exon_number 3 ; gene_id "DTNA--COX7B2^COX7B2^ENSG00000170516.17" ; gene_name COX7B2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000099423.5" ; havana_transcript "OTTHUMT00000216885.3" ; hgnc_id "HGNC:24381" ; level 2 ; orig_coord_info "chr4,46734950,46735192,-" ; protein_id "ENSP00000347799.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "DTNA--COX7B2^ENST00000355591.8" ; transcript_name "COX7B2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DTNA--COX7B2 HAVANA mRNA 55546 60362 . + . FI_gene_label "COX7B2^ENSG00000170516.17" ; ID "DTNA--COX7B2^ENST00000355591.8" ; Parent "DTNA--COX7B2^COX7B2^ENSG00000170516.17" ; ccdsid "CCDS3472.2" ; exon_id "ENSE00001136419.3" ; exon_number 3 ; gene_id "DTNA--COX7B2^COX7B2^ENSG00000170516.17" ; gene_name COX7B2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000099423.5" ; havana_transcript "OTTHUMT00000216885.3" ; hgnc_id "HGNC:24381" ; level 2 ; orig_coord_info "chr4,46734950,46735192,-" ; protein_id "ENSP00000347799.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "DTNA--COX7B2^ENST00000355591.8" ; transcript_name "COX7B2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ELP4--ANO3 HAVANA gene 58264 90965 . + . FI_gene_label "ANO3^ENSG00000134343.14" ; ID "ELP4--ANO3^ANO3^ENSG00000134343.14" ; ccdsid "CCDS31447.1" ; exon_id "ENSE00001359524.2" ; exon_number 1 ; gene_id "ELP4--ANO3^ANO3^ENSG00000134343.14" ; gene_name ANO3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166096.7" ; havana_transcript "OTTHUMT00000387806.3" ; hgnc_id "HGNC:14004" ; level 2 ; orig_coord_info "chr11,26332276,26332321,+" ; protein_id "ENSP00000256737.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ELP4--ANO3^ENST00000256737.8" ; transcript_name "ANO3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ELP4--ANO3 HAVANA mRNA 58264 90965 . + . FI_gene_label "ANO3^ENSG00000134343.14" ; ID "ELP4--ANO3^ENST00000256737.8" ; Parent "ELP4--ANO3^ANO3^ENSG00000134343.14" ; ccdsid "CCDS31447.1" ; exon_id "ENSE00001359524.2" ; exon_number 1 ; gene_id "ELP4--ANO3^ANO3^ENSG00000134343.14" ; gene_name ANO3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166096.7" ; havana_transcript "OTTHUMT00000387806.3" ; hgnc_id "HGNC:14004" ; level 2 ; orig_coord_info "chr11,26332276,26332321,+" ; protein_id "ENSP00000256737.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ELP4--ANO3^ENST00000256737.8" ; transcript_name "ANO3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ELP4--ANO3 HAVANA gene 1008 45148 . + . FI_gene_label "ELP4^ENSG00000109911.19" ; ID "ELP4--ANO3^ELP4^ENSG00000109911.19" ; exon_id "ENSE00001358659.4" ; exon_number 1 ; gene_id "ELP4--ANO3^ELP4^ENSG00000109911.19" ; gene_name ELP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142919.11" ; havana_transcript "OTTHUMT00000492036.1" ; hgnc_id "HGNC:1171" ; level 2 ; orig_coord_info "chr11,31509785,31510007,+" ; protein_id "ENSP00000298937.9" ; tag NAGNAG_splice_site RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "ELP4--ANO3^ENST00000350638.10" ; transcript_name "ELP4-201" ; transcript_support_level 5 ; transcript_type protein_coding
ELP4--ANO3 HAVANA mRNA 1008 45148 . + . FI_gene_label "ELP4^ENSG00000109911.19" ; ID "ELP4--ANO3^ENST00000350638.10" ; Parent "ELP4--ANO3^ELP4^ENSG00000109911.19" ; exon_id "ENSE00001358659.4" ; exon_number 1 ; gene_id "ELP4--ANO3^ELP4^ENSG00000109911.19" ; gene_name ELP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142919.11" ; havana_transcript "OTTHUMT00000492036.1" ; hgnc_id "HGNC:1171" ; level 2 ; orig_coord_info "chr11,31509785,31510007,+" ; protein_id "ENSP00000298937.9" ; tag NAGNAG_splice_site RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "ELP4--ANO3^ENST00000350638.10" ; transcript_name "ELP4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
FAM3B--AC008740.1 HAVANA gene 2100 13548 . + . FI_gene_label "FAM3B^ENSG00000183844.17" ; ID "FAM3B--AC008740.1^FAM3B^ENSG00000183844.17" ; ccdsid "CCDS13671.1" ; exon_id "ENSE00001416667.2" ; exon_number 1 ; gene_id "FAM3B--AC008740.1^FAM3B^ENSG00000183844.17" ; gene_name FAM3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000086752.3" ; havana_transcript "OTTHUMT00000195142.2" ; hgnc_id "HGNC:1253" ; level 2 ; orig_coord_info "chr21,41316880,41316898,+" ; protein_id "ENSP00000350673.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAM3B--AC008740.1^ENST00000357985.7" ; transcript_name "FAM3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM3B--AC008740.1 HAVANA mRNA 2100 13548 . + . FI_gene_label "FAM3B^ENSG00000183844.17" ; ID "FAM3B--AC008740.1^ENST00000357985.7" ; Parent "FAM3B--AC008740.1^FAM3B^ENSG00000183844.17" ; ccdsid "CCDS13671.1" ; exon_id "ENSE00001416667.2" ; exon_number 1 ; gene_id "FAM3B--AC008740.1^FAM3B^ENSG00000183844.17" ; gene_name FAM3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000086752.3" ; havana_transcript "OTTHUMT00000195142.2" ; hgnc_id "HGNC:1253" ; level 2 ; orig_coord_info "chr21,41316880,41316898,+" ; protein_id "ENSP00000350673.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAM3B--AC008740.1^ENST00000357985.7" ; transcript_name "FAM3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FAM3B--SNX29P1 HAVANA gene 2100 13548 . + . FI_gene_label "FAM3B^ENSG00000183844.17" ; ID "FAM3B--SNX29P1^FAM3B^ENSG00000183844.17" ; ccdsid "CCDS13671.1" ; exon_id "ENSE00001416667.2" ; exon_number 1 ; gene_id "FAM3B--SNX29P1^FAM3B^ENSG00000183844.17" ; gene_name FAM3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000086752.3" ; havana_transcript "OTTHUMT00000195142.2" ; hgnc_id "HGNC:1253" ; level 2 ; orig_coord_info "chr21,41316880,41316898,+" ; protein_id "ENSP00000350673.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAM3B--SNX29P1^ENST00000357985.7" ; transcript_name "FAM3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM3B--SNX29P1 HAVANA mRNA 2100 13548 . + . FI_gene_label "FAM3B^ENSG00000183844.17" ; ID "FAM3B--SNX29P1^ENST00000357985.7" ; Parent "FAM3B--SNX29P1^FAM3B^ENSG00000183844.17" ; ccdsid "CCDS13671.1" ; exon_id "ENSE00001416667.2" ; exon_number 1 ; gene_id "FAM3B--SNX29P1^FAM3B^ENSG00000183844.17" ; gene_name FAM3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000086752.3" ; havana_transcript "OTTHUMT00000195142.2" ; hgnc_id "HGNC:1253" ; level 2 ; orig_coord_info "chr21,41316880,41316898,+" ; protein_id "ENSP00000350673.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAM3B--SNX29P1^ENST00000357985.7" ; transcript_name "FAM3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FSIP1--AC013652.1 HAVANA mRNA 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^ENST00000350221.4" ; Parent "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
H1-7--STAP2 HAVANA gene 1001 2300 . + . FI_gene_label "H1-7^ENSG00000187166.1" ; ID "H1-7--STAP2^H1-7^ENSG00000187166.1" ; ccdsid "CCDS8762.1" ; exon_id "ENSE00001331770.2" ; exon_number 1 ; gene_id "H1-7--STAP2^H1-7^ENSG00000187166.1" ; gene_name "H1-7" ; gene_type protein_coding ; havana_gene "OTTHUMG00000169904.1" ; havana_transcript "OTTHUMT00000406516.1" ; hgnc_id "HGNC:24893" ; level 2 ; orig_coord_info "chr12,48329292,48330056,+" ; protein_id "ENSP00000334805.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "H1-7--STAP2^ENST00000335017.1" ; transcript_name "H1-7-201" ; transcript_support_level NA ; transcript_type protein_coding
H1-7--STAP2 HAVANA mRNA 1001 2300 . + . FI_gene_label "H1-7^ENSG00000187166.1" ; ID "H1-7--STAP2^ENST00000335017.1" ; Parent "H1-7--STAP2^H1-7^ENSG00000187166.1" ; ccdsid "CCDS8762.1" ; exon_id "ENSE00001331770.2" ; exon_number 1 ; gene_id "H1-7--STAP2^H1-7^ENSG00000187166.1" ; gene_name "H1-7" ; gene_type protein_coding ; havana_gene "OTTHUMG00000169904.1" ; havana_transcript "OTTHUMT00000406516.1" ; hgnc_id "HGNC:24893" ; level 2 ; orig_coord_info "chr12,48329292,48330056,+" ; protein_id "ENSP00000334805.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "H1-7--STAP2^ENST00000335017.1" ; transcript_name "H1-7-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
H1-7--STAP2 HAVANA gene 6784 16431 . + . FI_gene_label "STAP2^ENSG00000178078.12" ; ID "H1-7--STAP2^STAP2^ENSG00000178078.12" ; ccdsid "CCDS45926.1" ; exon_id "ENSE00002980645.2" ; exon_number 1 ; gene_id "H1-7--STAP2^STAP2^ENSG00000178078.12" ; gene_name STAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181884.4" ; havana_transcript "OTTHUMT00000458114.2" ; hgnc_id "HGNC:30430" ; level 2 ; orig_coord_info "chr19,4338652,4338753,-" ; protein_id "ENSP00000471052.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "H1-7--STAP2^ENST00000594605.6" ; transcript_name "STAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
H1-7--STAP2 HAVANA mRNA 6784 16431 . + . FI_gene_label "STAP2^ENSG00000178078.12" ; ID "H1-7--STAP2^ENST00000594605.6" ; Parent "H1-7--STAP2^STAP2^ENSG00000178078.12" ; ccdsid "CCDS45926.1" ; exon_id "ENSE00002980645.2" ; exon_number 1 ; gene_id "H1-7--STAP2^STAP2^ENSG00000178078.12" ; gene_name STAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181884.4" ; havana_transcript "OTTHUMT00000458114.2" ; hgnc_id "HGNC:30430" ; level 2 ; orig_coord_info "chr19,4338652,4338753,-" ; protein_id "ENSP00000471052.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "H1-7--STAP2^ENST00000594605.6" ; transcript_name "STAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HTATIP2--FAM3B HAVANA gene 11636 23084 . + . FI_gene_label "FAM3B^ENSG00000183844.17" ; ID "HTATIP2--FAM3B^FAM3B^ENSG00000183844.17" ; ccdsid "CCDS13671.1" ; exon_id "ENSE00001416667.2" ; exon_number 1 ; gene_id "HTATIP2--FAM3B^FAM3B^ENSG00000183844.17" ; gene_name FAM3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000086752.3" ; havana_transcript "OTTHUMT00000195142.2" ; hgnc_id "HGNC:1253" ; level 2 ; orig_coord_info "chr21,41316880,41316898,+" ; protein_id "ENSP00000350673.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HTATIP2--FAM3B^ENST00000357985.7" ; transcript_name "FAM3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
HTATIP2--FAM3B HAVANA mRNA 11636 23084 . + . FI_gene_label "FAM3B^ENSG00000183844.17" ; ID "HTATIP2--FAM3B^ENST00000357985.7" ; Parent "HTATIP2--FAM3B^FAM3B^ENSG00000183844.17" ; ccdsid "CCDS13671.1" ; exon_id "ENSE00001416667.2" ; exon_number 1 ; gene_id "HTATIP2--FAM3B^FAM3B^ENSG00000183844.17" ; gene_name FAM3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000086752.3" ; havana_transcript "OTTHUMT00000195142.2" ; hgnc_id "HGNC:1253" ; level 2 ; orig_coord_info "chr21,41316880,41316898,+" ; protein_id "ENSP00000350673.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HTATIP2--FAM3B^ENST00000357985.7" ; transcript_name "FAM3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HTATIP2--FAM3B HAVANA gene 1059 7536 . + . FI_gene_label "HTATIP2^ENSG00000109854.14" ; ID "HTATIP2--FAM3B^HTATIP2^ENSG00000109854.14" ; ccdsid "CCDS44553.1" ; exon_id "ENSE00002210708.1" ; exon_number 1 ; gene_id "HTATIP2--FAM3B^HTATIP2^ENSG00000109854.14" ; gene_name HTATIP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166015.6" ; havana_transcript "OTTHUMT00000387443.1" ; hgnc_id "HGNC:16637" ; level 2 ; orig_coord_info "chr11,20363812,20363912,+" ; protein_id "ENSP00000392985.2" ; tag basic CCDS ; transcript_id "HTATIP2--FAM3B^ENST00000419348.6" ; transcript_name "HTATIP2-201" ; transcript_support_level 2 ; transcript_type protein_coding
HTATIP2--FAM3B HAVANA mRNA 1059 7536 . + . FI_gene_label "HTATIP2^ENSG00000109854.14" ; ID "HTATIP2--FAM3B^ENST00000419348.6" ; Parent "HTATIP2--FAM3B^HTATIP2^ENSG00000109854.14" ; ccdsid "CCDS44553.1" ; exon_id "ENSE00002210708.1" ; exon_number 1 ; gene_id "HTATIP2--FAM3B^HTATIP2^ENSG00000109854.14" ; gene_name HTATIP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166015.6" ; havana_transcript "OTTHUMT00000387443.1" ; hgnc_id "HGNC:16637" ; level 2 ; orig_coord_info "chr11,20363812,20363912,+" ; protein_id "ENSP00000392985.2" ; tag basic CCDS ; transcript_id "HTATIP2--FAM3B^ENST00000419348.6" ; transcript_name "HTATIP2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
HTATIP2--NAV2 HAVANA gene 11841 67073 . + . FI_gene_label "NAV2^ENSG00000166833.22" ; ID "HTATIP2--NAV2^NAV2^ENSG00000166833.22" ; ccdsid "CCDS7850.1" ; exon_id "ENSE00003846126.1" ; exon_number 1 ; gene_id "HTATIP2--NAV2^NAV2^ENSG00000166833.22" ; gene_name NAV2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151837.7" ; havana_transcript "OTTHUMT00000324114.1" ; hgnc_id "HGNC:15997" ; level 2 ; orig_coord_info "chr11,19713696,19713962,+" ; protein_id "ENSP00000309577.6" ; tag basic MANE_Select CCDS ; transcript_id "HTATIP2--NAV2^ENST00000349880.9" ; transcript_name "NAV2-201" ; transcript_support_level 1 ; transcript_type protein_coding
HTATIP2--NAV2 HAVANA mRNA 11841 67073 . + . FI_gene_label "NAV2^ENSG00000166833.22" ; ID "HTATIP2--NAV2^ENST00000349880.9" ; Parent "HTATIP2--NAV2^NAV2^ENSG00000166833.22" ; ccdsid "CCDS7850.1" ; exon_id "ENSE00003846126.1" ; exon_number 1 ; gene_id "HTATIP2--NAV2^NAV2^ENSG00000166833.22" ; gene_name NAV2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151837.7" ; havana_transcript "OTTHUMT00000324114.1" ; hgnc_id "HGNC:15997" ; level 2 ; orig_coord_info "chr11,19713696,19713962,+" ; protein_id "ENSP00000309577.6" ; tag basic MANE_Select CCDS ; transcript_id "HTATIP2--NAV2^ENST00000349880.9" ; transcript_name "NAV2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HTATIP2--NAV2 HAVANA gene 1059 7536 . + . FI_gene_label "HTATIP2^ENSG00000109854.14" ; ID "HTATIP2--NAV2^HTATIP2^ENSG00000109854.14" ; ccdsid "CCDS44553.1" ; exon_id "ENSE00002210708.1" ; exon_number 1 ; gene_id "HTATIP2--NAV2^HTATIP2^ENSG00000109854.14" ; gene_name HTATIP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166015.6" ; havana_transcript "OTTHUMT00000387443.1" ; hgnc_id "HGNC:16637" ; level 2 ; orig_coord_info "chr11,20363812,20363912,+" ; protein_id "ENSP00000392985.2" ; tag basic CCDS ; transcript_id "HTATIP2--NAV2^ENST00000419348.6" ; transcript_name "HTATIP2-201" ; transcript_support_level 2 ; transcript_type protein_coding
HTATIP2--NAV2 HAVANA mRNA 1059 7536 . + . FI_gene_label "HTATIP2^ENSG00000109854.14" ; ID "HTATIP2--NAV2^ENST00000419348.6" ; Parent "HTATIP2--NAV2^HTATIP2^ENSG00000109854.14" ; ccdsid "CCDS44553.1" ; exon_id "ENSE00002210708.1" ; exon_number 1 ; gene_id "HTATIP2--NAV2^HTATIP2^ENSG00000109854.14" ; gene_name HTATIP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166015.6" ; havana_transcript "OTTHUMT00000387443.1" ; hgnc_id "HGNC:16637" ; level 2 ; orig_coord_info "chr11,20363812,20363912,+" ; protein_id "ENSP00000392985.2" ; tag basic CCDS ; transcript_id "HTATIP2--NAV2^ENST00000419348.6" ; transcript_name "HTATIP2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
IGSF3--RET HAVANA gene 2325 17240 . + . FI_gene_label "IGSF3^ENSG00000143061.18" ; ID "IGSF3--RET^IGSF3^ENSG00000143061.18" ; ccdsid "CCDS30814.1" ; exon_id "ENSE00000957890.1" ; exon_number 1 ; gene_id "IGSF3--RET^IGSF3^ENSG00000143061.18" ; gene_name IGSF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022751.4" ; havana_transcript "OTTHUMT00000059041.1" ; hgnc_id "HGNC:5950" ; level 2 ; orig_coord_info "chr1,116666284,116666326,-" ; protein_id "ENSP00000321184.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "IGSF3--RET^ENST00000318837.6" ; transcript_name "IGSF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
IGSF3--RET HAVANA mRNA 2325 17240 . + . FI_gene_label "IGSF3^ENSG00000143061.18" ; ID "IGSF3--RET^ENST00000318837.6" ; Parent "IGSF3--RET^IGSF3^ENSG00000143061.18" ; ccdsid "CCDS30814.1" ; exon_id "ENSE00000957890.1" ; exon_number 1 ; gene_id "IGSF3--RET^IGSF3^ENSG00000143061.18" ; gene_name IGSF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022751.4" ; havana_transcript "OTTHUMT00000059041.1" ; hgnc_id "HGNC:5950" ; level 2 ; orig_coord_info "chr1,116666284,116666326,-" ; protein_id "ENSP00000321184.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "IGSF3--RET^ENST00000318837.6" ; transcript_name "IGSF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
IGSF3--RET HAVANA gene 23067 43687 . + . FI_gene_label "RET^ENSG00000165731.20" ; ID "IGSF3--RET^RET^ENSG00000165731.20" ; ccdsid "CCDS53525.1" ; exon_id "ENSE00003744437.1" ; exon_number 1 ; gene_id "IGSF3--RET^RET^ENSG00000165731.20" ; gene_name RET ; gene_type protein_coding ; havana_gene "OTTHUMG00000018024.7" ; havana_transcript "OTTHUMT00000358138.3" ; hgnc_id "HGNC:9967" ; level 2 ; orig_coord_info "chr10,43077259,43077331,+" ; protein_id "ENSP00000344798.4" ; tag basic CCDS ; transcript_id "IGSF3--RET^ENST00000340058.6" ; transcript_name "RET-201" ; transcript_support_level 1 ; transcript_type protein_coding
IGSF3--RET HAVANA mRNA 23067 43687 . + . FI_gene_label "RET^ENSG00000165731.20" ; ID "IGSF3--RET^ENST00000340058.6" ; Parent "IGSF3--RET^RET^ENSG00000165731.20" ; ccdsid "CCDS53525.1" ; exon_id "ENSE00003744437.1" ; exon_number 1 ; gene_id "IGSF3--RET^RET^ENSG00000165731.20" ; gene_name RET ; gene_type protein_coding ; havana_gene "OTTHUMG00000018024.7" ; havana_transcript "OTTHUMT00000358138.3" ; hgnc_id "HGNC:9967" ; level 2 ; orig_coord_info "chr10,43077259,43077331,+" ; protein_id "ENSP00000344798.4" ; tag basic CCDS ; transcript_id "IGSF3--RET^ENST00000340058.6" ; transcript_name "RET-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IRF7--CARS1 HAVANA gene 7627 32803 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "IRF7--CARS1^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "IRF7--CARS1^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "IRF7--CARS1^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
IRF7--CARS1 HAVANA mRNA 7627 32803 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "IRF7--CARS1^ENST00000278224.13" ; Parent "IRF7--CARS1^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "IRF7--CARS1^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "IRF7--CARS1^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IRF7--CARS1 HAVANA gene 1014 4393 . + . FI_gene_label "IRF7^ENSG00000185507.21" ; ID "IRF7--CARS1^IRF7^ENSG00000185507.21" ; ccdsid "CCDS7705.1" ; exon_id "ENSE00001387223.3" ; exon_number 2 ; gene_id "IRF7--CARS1^IRF7^ENSG00000185507.21" ; gene_name IRF7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132019.9" ; havana_transcript "OTTHUMT00000255025.1" ; hgnc_id "HGNC:6122" ; level 2 ; orig_coord_info "chr11,615097,615318,-" ; protein_id "ENSP00000329411.5" ; tag retained_intron_first basic appris_principal_4 CCDS ; transcript_id "IRF7--CARS1^ENST00000330243.9" ; transcript_name "IRF7-201" ; transcript_support_level 5 ; transcript_type protein_coding
IRF7--CARS1 HAVANA mRNA 1014 4393 . + . FI_gene_label "IRF7^ENSG00000185507.21" ; ID "IRF7--CARS1^ENST00000330243.9" ; Parent "IRF7--CARS1^IRF7^ENSG00000185507.21" ; ccdsid "CCDS7705.1" ; exon_id "ENSE00001387223.3" ; exon_number 2 ; gene_id "IRF7--CARS1^IRF7^ENSG00000185507.21" ; gene_name IRF7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132019.9" ; havana_transcript "OTTHUMT00000255025.1" ; hgnc_id "HGNC:6122" ; level 2 ; orig_coord_info "chr11,615097,615318,-" ; protein_id "ENSP00000329411.5" ; tag retained_intron_first basic appris_principal_4 CCDS ; transcript_id "IRF7--CARS1^ENST00000330243.9" ; transcript_name "IRF7-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
LIMCH1--GOSR1 HAVANA gene 52460 72357 . + . FI_gene_label "GOSR1^ENSG00000108587.16" ; ID "LIMCH1--GOSR1^GOSR1^ENSG00000108587.16" ; ccdsid "CCDS11258.1" ; exon_id "ENSE00002707505.1" ; exon_number 1 ; gene_id "LIMCH1--GOSR1^GOSR1^ENSG00000108587.16" ; gene_name GOSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132796.3" ; havana_transcript "OTTHUMT00000256208.2" ; hgnc_id "HGNC:4430" ; level 2 ; orig_coord_info "chr17,30477434,30477464,+" ; protein_id "ENSP00000225724.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "LIMCH1--GOSR1^ENST00000225724.9" ; transcript_name "GOSR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LIMCH1--GOSR1 HAVANA mRNA 52460 72357 . + . FI_gene_label "GOSR1^ENSG00000108587.16" ; ID "LIMCH1--GOSR1^ENST00000225724.9" ; Parent "LIMCH1--GOSR1^GOSR1^ENSG00000108587.16" ; ccdsid "CCDS11258.1" ; exon_id "ENSE00002707505.1" ; exon_number 1 ; gene_id "LIMCH1--GOSR1^GOSR1^ENSG00000108587.16" ; gene_name GOSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132796.3" ; havana_transcript "OTTHUMT00000256208.2" ; hgnc_id "HGNC:4430" ; level 2 ; orig_coord_info "chr17,30477434,30477464,+" ; protein_id "ENSP00000225724.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "LIMCH1--GOSR1^ENST00000225724.9" ; transcript_name "GOSR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LIMCH1--GOSR1 HAVANA gene 2181 49459 . + . FI_gene_label "LIMCH1^ENSG00000064042.18" ; ID "LIMCH1--GOSR1^LIMCH1^ENSG00000064042.18" ; ccdsid "CCDS33977.1" ; exon_id "ENSE00001251901.4" ; exon_number 1 ; gene_id "LIMCH1--GOSR1^LIMCH1^ENSG00000064042.18" ; gene_name LIMCH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160575.7" ; havana_transcript "OTTHUMT00000361249.2" ; hgnc_id "HGNC:29191" ; level 2 ; orig_coord_info "chr4,41360841,41360936,+" ; protein_id "ENSP00000316891.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "LIMCH1--GOSR1^ENST00000313860.11" ; transcript_name "LIMCH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LIMCH1--GOSR1 HAVANA mRNA 2181 49459 . + . FI_gene_label "LIMCH1^ENSG00000064042.18" ; ID "LIMCH1--GOSR1^ENST00000313860.11" ; Parent "LIMCH1--GOSR1^LIMCH1^ENSG00000064042.18" ; ccdsid "CCDS33977.1" ; exon_id "ENSE00001251901.4" ; exon_number 1 ; gene_id "LIMCH1--GOSR1^LIMCH1^ENSG00000064042.18" ; gene_name LIMCH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160575.7" ; havana_transcript "OTTHUMT00000361249.2" ; hgnc_id "HGNC:29191" ; level 2 ; orig_coord_info "chr4,41360841,41360936,+" ; protein_id "ENSP00000316891.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "LIMCH1--GOSR1^ENST00000313860.11" ; transcript_name "LIMCH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC01953--IKZF2 HAVANA gene 7807 23944 . + . FI_gene_label "IKZF2^ENSG00000030419.16" ; ID "LINC01953--IKZF2^IKZF2^ENSG00000030419.16" ; exon_id "ENSE00003626229.1" ; exon_number 1 ; gene_id "LINC01953--IKZF2^IKZF2^ENSG00000030419.16" ; gene_name IKZF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133005.7" ; havana_transcript "OTTHUMT00000256594.1" ; hgnc_id "HGNC:13177" ; level 2 ; orig_coord_info "chr2,213150181,213150183,-" ; protein_id "ENSP00000342876.2" ; tag basic appris_alternative_1 ; transcript_id "LINC01953--IKZF2^ENST00000342002.6" ; transcript_name "IKZF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LINC01953--IKZF2 HAVANA mRNA 7807 23944 . + . FI_gene_label "IKZF2^ENSG00000030419.16" ; ID "LINC01953--IKZF2^ENST00000342002.6" ; Parent "LINC01953--IKZF2^IKZF2^ENSG00000030419.16" ; exon_id "ENSE00003626229.1" ; exon_number 1 ; gene_id "LINC01953--IKZF2^IKZF2^ENSG00000030419.16" ; gene_name IKZF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133005.7" ; havana_transcript "OTTHUMT00000256594.1" ; hgnc_id "HGNC:13177" ; level 2 ; orig_coord_info "chr2,213150181,213150183,-" ; protein_id "ENSP00000342876.2" ; tag basic appris_alternative_1 ; transcript_id "LINC01953--IKZF2^ENST00000342002.6" ; transcript_name "IKZF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC02686--SNX29 HAVANA gene 31778 35313 . + . FI_gene_label "SNX29^ENSG00000048471.14" ; ID "LINC02686--SNX29^SNX29^ENSG00000048471.14" ; exon_id "ENSE00002616399.1" ; exon_number 1 ; gene_id "LINC02686--SNX29^SNX29^ENSG00000048471.14" ; gene_name SNX29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129827.4" ; havana_transcript "OTTHUMT00000422625.1" ; hgnc_id "HGNC:30542" ; level 2 ; orig_coord_info "chr16,12356253,12356279,+" ; protein_id "ENSP00000455327.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "LINC02686--SNX29^ENST00000562510.1" ; transcript_name "SNX29-201" ; transcript_support_level 3 ; transcript_type protein_coding
LINC02686--SNX29 HAVANA mRNA 31778 35313 . + . FI_gene_label "SNX29^ENSG00000048471.14" ; ID "LINC02686--SNX29^ENST00000562510.1" ; Parent "LINC02686--SNX29^SNX29^ENSG00000048471.14" ; exon_id "ENSE00002616399.1" ; exon_number 1 ; gene_id "LINC02686--SNX29^SNX29^ENSG00000048471.14" ; gene_name SNX29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129827.4" ; havana_transcript "OTTHUMT00000422625.1" ; hgnc_id "HGNC:30542" ; level 2 ; orig_coord_info "chr16,12356253,12356279,+" ; protein_id "ENSP00000455327.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "LINC02686--SNX29^ENST00000562510.1" ; transcript_name "SNX29-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
MAN1A2--PRMT3 HAVANA gene 26668 45730 . + . FI_gene_label "PRMT3^ENSG00000185238.13" ; ID "MAN1A2--PRMT3^PRMT3^ENSG00000185238.13" ; exon_id "ENSE00002194773.1" ; exon_number 1 ; gene_id "MAN1A2--PRMT3^PRMT3^ENSG00000185238.13" ; gene_name PRMT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166022.4" ; havana_transcript "OTTHUMT00000387490.2" ; hgnc_id "HGNC:30163" ; level 2 ; orig_coord_info "chr11,20387747,20387774,+" ; protein_id "ENSP00000329586.5" ; transcript_id "MAN1A2--PRMT3^ENST00000330796.9" ; transcript_name "PRMT3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
MAN1A2--PRMT3 HAVANA mRNA 26668 45730 . + . FI_gene_label "PRMT3^ENSG00000185238.13" ; ID "MAN1A2--PRMT3^ENST00000330796.9" ; Parent "MAN1A2--PRMT3^PRMT3^ENSG00000185238.13" ; exon_id "ENSE00002194773.1" ; exon_number 1 ; gene_id "MAN1A2--PRMT3^PRMT3^ENSG00000185238.13" ; gene_name PRMT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166022.4" ; havana_transcript "OTTHUMT00000387490.2" ; hgnc_id "HGNC:30163" ; level 2 ; orig_coord_info "chr11,20387747,20387774,+" ; protein_id "ENSP00000329586.5" ; transcript_id "MAN1A2--PRMT3^ENST00000330796.9" ; transcript_name "PRMT3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
MAN1A2--PRMT3 HAVANA gene 1001 23667 . + . FI_gene_label "MAN1A2^ENSG00000198162.12" ; ID "MAN1A2--PRMT3^MAN1A2^ENSG00000198162.12" ; ccdsid "CCDS895.1" ; exon_id "ENSE00002687723.1" ; exon_number 1 ; gene_id "MAN1A2--PRMT3^MAN1A2^ENSG00000198162.12" ; gene_name MAN1A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012149.2" ; havana_transcript "OTTHUMT00000033593.1" ; hgnc_id "HGNC:6822" ; level 2 ; orig_coord_info "chr1,117368184,117368485,+" ; protein_id "ENSP00000348959.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAN1A2--PRMT3^ENST00000356554.7" ; transcript_name "MAN1A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAN1A2--PRMT3 HAVANA mRNA 1001 23667 . + . FI_gene_label "MAN1A2^ENSG00000198162.12" ; ID "MAN1A2--PRMT3^ENST00000356554.7" ; Parent "MAN1A2--PRMT3^MAN1A2^ENSG00000198162.12" ; ccdsid "CCDS895.1" ; exon_id "ENSE00002687723.1" ; exon_number 1 ; gene_id "MAN1A2--PRMT3^MAN1A2^ENSG00000198162.12" ; gene_name MAN1A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012149.2" ; havana_transcript "OTTHUMT00000033593.1" ; hgnc_id "HGNC:6822" ; level 2 ; orig_coord_info "chr1,117368184,117368485,+" ; protein_id "ENSP00000348959.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAN1A2--PRMT3^ENST00000356554.7" ; transcript_name "MAN1A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
METTL22--ABCC8 HAVANA gene 1009 15631 . + . FI_gene_label "METTL22^ENSG00000067365.15" ; ID "METTL22--ABCC8^METTL22^ENSG00000067365.15" ; exon_id "ENSE00001525704.1" ; exon_number 2 ; gene_id "METTL22--ABCC8^METTL22^ENSG00000067365.15" ; gene_name METTL22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129694.7" ; havana_transcript "OTTHUMT00000433592.1" ; hgnc_id "HGNC:28368" ; level 2 ; orig_coord_info "chr16,8625666,8625798,+" ; protein_id "ENSP00000163678.6" ; transcript_id "METTL22--ABCC8^ENST00000163678.11" ; transcript_name "METTL22-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
METTL22--ABCC8 HAVANA mRNA 1009 15631 . + . FI_gene_label "METTL22^ENSG00000067365.15" ; ID "METTL22--ABCC8^ENST00000163678.11" ; Parent "METTL22--ABCC8^METTL22^ENSG00000067365.15" ; exon_id "ENSE00001525704.1" ; exon_number 2 ; gene_id "METTL22--ABCC8^METTL22^ENSG00000067365.15" ; gene_name METTL22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129694.7" ; havana_transcript "OTTHUMT00000433592.1" ; hgnc_id "HGNC:28368" ; level 2 ; orig_coord_info "chr16,8625666,8625798,+" ; protein_id "ENSP00000163678.6" ; transcript_id "METTL22--ABCC8^ENST00000163678.11" ; transcript_name "METTL22-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
METTL22--ABCC8 HAVANA gene 22096 60197 . + . FI_gene_label "ABCC8^ENSG00000006071.15" ; ID "METTL22--ABCC8^ABCC8^ENSG00000006071.15" ; ccdsid "CCDS73264.1" ; exon_id "ENSE00003899289.1" ; exon_number 1 ; gene_id "METTL22--ABCC8^ABCC8^ENSG00000006071.15" ; gene_name ABCC8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166316.33" ; havana_transcript "OTTHUMT00000496828.1" ; hgnc_id "HGNC:59" ; level 2 ; orig_coord_info "chr11,17476629,17476776,-" ; protein_id "ENSP00000303960.4" ; tag RNA_Seq_supported_partial basic appris_alternative_1 CCDS ; transcript_id "METTL22--ABCC8^ENST00000302539.9" ; transcript_name "ABCC8-201" ; transcript_support_level 5 ; transcript_type protein_coding
METTL22--ABCC8 HAVANA mRNA 22096 60197 . + . FI_gene_label "ABCC8^ENSG00000006071.15" ; ID "METTL22--ABCC8^ENST00000302539.9" ; Parent "METTL22--ABCC8^ABCC8^ENSG00000006071.15" ; ccdsid "CCDS73264.1" ; exon_id "ENSE00003899289.1" ; exon_number 1 ; gene_id "METTL22--ABCC8^ABCC8^ENSG00000006071.15" ; gene_name ABCC8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166316.33" ; havana_transcript "OTTHUMT00000496828.1" ; hgnc_id "HGNC:59" ; level 2 ; orig_coord_info "chr11,17476629,17476776,-" ; protein_id "ENSP00000303960.4" ; tag RNA_Seq_supported_partial basic appris_alternative_1 CCDS ; transcript_id "METTL22--ABCC8^ENST00000302539.9" ; transcript_name "ABCC8-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MRPL21--CARD18 HAVANA gene 1004 7906 . + . FI_gene_label "MRPL21^ENSG00000197345.13" ; ID "MRPL21--CARD18^MRPL21^ENSG00000197345.13" ; ccdsid "CCDS8186.1" ; exon_id "ENSE00002290904.1" ; exon_number 1 ; gene_id "MRPL21--CARD18^MRPL21^ENSG00000197345.13" ; gene_name MRPL21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167893.4" ; havana_transcript "OTTHUMT00000396856.2" ; hgnc_id "HGNC:14479" ; level 2 ; orig_coord_info "chr11,68903723,68903810,-" ; protein_id "ENSP00000354580.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MRPL21--CARD18^ENST00000362034.7" ; transcript_name "MRPL21-201" ; transcript_support_level 1 ; transcript_type protein_coding
MRPL21--CARD18 HAVANA mRNA 1004 7906 . + . FI_gene_label "MRPL21^ENSG00000197345.13" ; ID "MRPL21--CARD18^ENST00000362034.7" ; Parent "MRPL21--CARD18^MRPL21^ENSG00000197345.13" ; ccdsid "CCDS8186.1" ; exon_id "ENSE00002290904.1" ; exon_number 1 ; gene_id "MRPL21--CARD18^MRPL21^ENSG00000197345.13" ; gene_name MRPL21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167893.4" ; havana_transcript "OTTHUMT00000396856.2" ; hgnc_id "HGNC:14479" ; level 2 ; orig_coord_info "chr11,68903723,68903810,-" ; protein_id "ENSP00000354580.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MRPL21--CARD18^ENST00000362034.7" ; transcript_name "MRPL21-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRPL21--CARD18 HAVANA gene 20686 22025 . + . FI_gene_label "CARD18^ENSG00000255501.3" ; ID "MRPL21--CARD18^CARD18^ENSG00000255501.3" ; exon_id "ENSE00002177090.1" ; exon_number 1 ; gene_id "MRPL21--CARD18^CARD18^ENSG00000255501.3" ; gene_name CARD18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166165.5" ; havana_transcript "OTTHUMT00000388442.1" ; hgnc_id "HGNC:28861" ; level 2 ; orig_coord_info "chr11,105138816,105138968,-" ; protein_id "ENSP00000437035.1" ; tag basic ; transcript_id "MRPL21--CARD18^ENST00000526823.1" ; transcript_name "CARD18-201" ; transcript_support_level 1 ; transcript_type protein_coding
MRPL21--CARD18 HAVANA mRNA 20686 22025 . + . FI_gene_label "CARD18^ENSG00000255501.3" ; ID "MRPL21--CARD18^ENST00000526823.1" ; Parent "MRPL21--CARD18^CARD18^ENSG00000255501.3" ; exon_id "ENSE00002177090.1" ; exon_number 1 ; gene_id "MRPL21--CARD18^CARD18^ENSG00000255501.3" ; gene_name CARD18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166165.5" ; havana_transcript "OTTHUMT00000388442.1" ; hgnc_id "HGNC:28861" ; level 2 ; orig_coord_info "chr11,105138816,105138968,-" ; protein_id "ENSP00000437035.1" ; tag basic ; transcript_id "MRPL21--CARD18^ENST00000526823.1" ; transcript_name "CARD18-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MYO1D--AC069061.1 HAVANA gene 1054 38698 . + . FI_gene_label "MYO1D^ENSG00000176658.17" ; ID "MYO1D--AC069061.1^MYO1D^ENSG00000176658.17" ; ccdsid "CCDS32615.1" ; exon_id "ENSE00003848488.1" ; exon_number 1 ; gene_id "MYO1D--AC069061.1^MYO1D^ENSG00000176658.17" ; gene_name MYO1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000179636.3" ; havana_transcript "OTTHUMT00000447457.2" ; hgnc_id "HGNC:7598" ; level 2 ; orig_coord_info "chr17,32876778,32876872,-" ; protein_id "ENSP00000324527.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO1D--AC069061.1^ENST00000318217.10" ; transcript_name "MYO1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
MYO1D--AC069061.1 HAVANA mRNA 1054 38698 . + . FI_gene_label "MYO1D^ENSG00000176658.17" ; ID "MYO1D--AC069061.1^ENST00000318217.10" ; Parent "MYO1D--AC069061.1^MYO1D^ENSG00000176658.17" ; ccdsid "CCDS32615.1" ; exon_id "ENSE00003848488.1" ; exon_number 1 ; gene_id "MYO1D--AC069061.1^MYO1D^ENSG00000176658.17" ; gene_name MYO1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000179636.3" ; havana_transcript "OTTHUMT00000447457.2" ; hgnc_id "HGNC:7598" ; level 2 ; orig_coord_info "chr17,32876778,32876872,-" ; protein_id "ENSP00000324527.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO1D--AC069061.1^ENST00000318217.10" ; transcript_name "MYO1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MYO1D--AC131274.3 HAVANA gene 1054 38698 . + . FI_gene_label "MYO1D^ENSG00000176658.17" ; ID "MYO1D--AC131274.3^MYO1D^ENSG00000176658.17" ; ccdsid "CCDS32615.1" ; exon_id "ENSE00003848488.1" ; exon_number 1 ; gene_id "MYO1D--AC131274.3^MYO1D^ENSG00000176658.17" ; gene_name MYO1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000179636.3" ; havana_transcript "OTTHUMT00000447457.2" ; hgnc_id "HGNC:7598" ; level 2 ; orig_coord_info "chr17,32876778,32876872,-" ; protein_id "ENSP00000324527.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO1D--AC131274.3^ENST00000318217.10" ; transcript_name "MYO1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
MYO1D--AC131274.3 HAVANA mRNA 1054 38698 . + . FI_gene_label "MYO1D^ENSG00000176658.17" ; ID "MYO1D--AC131274.3^ENST00000318217.10" ; Parent "MYO1D--AC131274.3^MYO1D^ENSG00000176658.17" ; ccdsid "CCDS32615.1" ; exon_id "ENSE00003848488.1" ; exon_number 1 ; gene_id "MYO1D--AC131274.3^MYO1D^ENSG00000176658.17" ; gene_name MYO1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000179636.3" ; havana_transcript "OTTHUMT00000447457.2" ; hgnc_id "HGNC:7598" ; level 2 ; orig_coord_info "chr17,32876778,32876872,-" ; protein_id "ENSP00000324527.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO1D--AC131274.3^ENST00000318217.10" ; transcript_name "MYO1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MYO1D--DTNA HAVANA gene 66535 89393 . + . FI_gene_label "DTNA^ENSG00000134769.22" ; ID "MYO1D--DTNA^DTNA^ENSG00000134769.22" ; ccdsid "CCDS56062.1" ; exon_id "ENSE00003609645.1" ; exon_number 2 ; gene_id "MYO1D--DTNA^DTNA^ENSG00000134769.22" ; gene_name DTNA ; gene_type protein_coding ; havana_gene "OTTHUMG00000132309.6" ; havana_transcript "OTTHUMT00000411818.1" ; hgnc_id "HGNC:3057" ; level 2 ; orig_coord_info "chr18,34820869,34820915,+" ; protein_id "ENSP00000269192.7" ; tag basic CCDS ; transcript_id "MYO1D--DTNA^ENST00000269192.11" ; transcript_name "DTNA-201" ; transcript_support_level 2 ; transcript_type protein_coding
MYO1D--DTNA HAVANA mRNA 66535 89393 . + . FI_gene_label "DTNA^ENSG00000134769.22" ; ID "MYO1D--DTNA^ENST00000269192.11" ; Parent "MYO1D--DTNA^DTNA^ENSG00000134769.22" ; ccdsid "CCDS56062.1" ; exon_id "ENSE00003609645.1" ; exon_number 2 ; gene_id "MYO1D--DTNA^DTNA^ENSG00000134769.22" ; gene_name DTNA ; gene_type protein_coding ; havana_gene "OTTHUMG00000132309.6" ; havana_transcript "OTTHUMT00000411818.1" ; hgnc_id "HGNC:3057" ; level 2 ; orig_coord_info "chr18,34820869,34820915,+" ; protein_id "ENSP00000269192.7" ; tag basic CCDS ; transcript_id "MYO1D--DTNA^ENST00000269192.11" ; transcript_name "DTNA-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MYO1D--DTNA HAVANA gene 1054 38698 . + . FI_gene_label "MYO1D^ENSG00000176658.17" ; ID "MYO1D--DTNA^MYO1D^ENSG00000176658.17" ; ccdsid "CCDS32615.1" ; exon_id "ENSE00003848488.1" ; exon_number 1 ; gene_id "MYO1D--DTNA^MYO1D^ENSG00000176658.17" ; gene_name MYO1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000179636.3" ; havana_transcript "OTTHUMT00000447457.2" ; hgnc_id "HGNC:7598" ; level 2 ; orig_coord_info "chr17,32876778,32876872,-" ; protein_id "ENSP00000324527.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO1D--DTNA^ENST00000318217.10" ; transcript_name "MYO1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
MYO1D--DTNA HAVANA mRNA 1054 38698 . + . FI_gene_label "MYO1D^ENSG00000176658.17" ; ID "MYO1D--DTNA^ENST00000318217.10" ; Parent "MYO1D--DTNA^MYO1D^ENSG00000176658.17" ; ccdsid "CCDS32615.1" ; exon_id "ENSE00003848488.1" ; exon_number 1 ; gene_id "MYO1D--DTNA^MYO1D^ENSG00000176658.17" ; gene_name MYO1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000179636.3" ; havana_transcript "OTTHUMT00000447457.2" ; hgnc_id "HGNC:7598" ; level 2 ; orig_coord_info "chr17,32876778,32876872,-" ; protein_id "ENSP00000324527.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO1D--DTNA^ENST00000318217.10" ; transcript_name "MYO1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MYO1D--LINC02799 HAVANA gene 1054 38698 . + . FI_gene_label "MYO1D^ENSG00000176658.17" ; ID "MYO1D--LINC02799^MYO1D^ENSG00000176658.17" ; ccdsid "CCDS32615.1" ; exon_id "ENSE00003848488.1" ; exon_number 1 ; gene_id "MYO1D--LINC02799^MYO1D^ENSG00000176658.17" ; gene_name MYO1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000179636.3" ; havana_transcript "OTTHUMT00000447457.2" ; hgnc_id "HGNC:7598" ; level 2 ; orig_coord_info "chr17,32876778,32876872,-" ; protein_id "ENSP00000324527.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO1D--LINC02799^ENST00000318217.10" ; transcript_name "MYO1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
MYO1D--LINC02799 HAVANA mRNA 1054 38698 . + . FI_gene_label "MYO1D^ENSG00000176658.17" ; ID "MYO1D--LINC02799^ENST00000318217.10" ; Parent "MYO1D--LINC02799^MYO1D^ENSG00000176658.17" ; ccdsid "CCDS32615.1" ; exon_id "ENSE00003848488.1" ; exon_number 1 ; gene_id "MYO1D--LINC02799^MYO1D^ENSG00000176658.17" ; gene_name MYO1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000179636.3" ; havana_transcript "OTTHUMT00000447457.2" ; hgnc_id "HGNC:7598" ; level 2 ; orig_coord_info "chr17,32876778,32876872,-" ; protein_id "ENSP00000324527.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO1D--LINC02799^ENST00000318217.10" ; transcript_name "MYO1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NAP1L4--RNH1 HAVANA gene 28158 38968 . + . FI_gene_label "RNH1^ENSG00000023191.17" ; ID "NAP1L4--RNH1^RNH1^ENSG00000023191.17" ; ccdsid "CCDS7697.1" ; exon_id "ENSE00003500305.1" ; exon_number 3 ; gene_id "NAP1L4--RNH1^RNH1^ENSG00000023191.17" ; gene_name RNH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000119086.10" ; havana_transcript "OTTHUMT00000384292.2" ; hgnc_id "HGNC:10074" ; level 2 ; orig_coord_info "chr11,502062,502162,-" ; protein_id "ENSP00000346402.2" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "NAP1L4--RNH1^ENST00000354420.7" ; transcript_name "RNH1-201" ; transcript_support_level 5 ; transcript_type protein_coding
NAP1L4--RNH1 HAVANA mRNA 28158 38968 . + . FI_gene_label "RNH1^ENSG00000023191.17" ; ID "NAP1L4--RNH1^ENST00000354420.7" ; Parent "NAP1L4--RNH1^RNH1^ENSG00000023191.17" ; ccdsid "CCDS7697.1" ; exon_id "ENSE00003500305.1" ; exon_number 3 ; gene_id "NAP1L4--RNH1^RNH1^ENSG00000023191.17" ; gene_name RNH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000119086.10" ; havana_transcript "OTTHUMT00000384292.2" ; hgnc_id "HGNC:10074" ; level 2 ; orig_coord_info "chr11,502062,502162,-" ; protein_id "ENSP00000346402.2" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "NAP1L4--RNH1^ENST00000354420.7" ; transcript_name "RNH1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NAP1L4--RNH1 HAVANA gene 1049 25093 . + . FI_gene_label "NAP1L4^ENSG00000205531.13" ; ID "NAP1L4--RNH1^NAP1L4^ENSG00000205531.13" ; ccdsid "CCDS41599.1" ; exon_id "ENSE00001485421.1" ; exon_number 2 ; gene_id "NAP1L4--RNH1^NAP1L4^ENSG00000205531.13" ; gene_name NAP1L4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011009.12" ; havana_transcript "OTTHUMT00000030273.4" ; hgnc_id "HGNC:7640" ; level 2 ; orig_coord_info "chr11,2979207,2979220,-" ; protein_id "ENSP00000369915.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NAP1L4--RNH1^ENST00000380542.9" ; transcript_name "NAP1L4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NAP1L4--RNH1 HAVANA mRNA 1049 25093 . + . FI_gene_label "NAP1L4^ENSG00000205531.13" ; ID "NAP1L4--RNH1^ENST00000380542.9" ; Parent "NAP1L4--RNH1^NAP1L4^ENSG00000205531.13" ; ccdsid "CCDS41599.1" ; exon_id "ENSE00001485421.1" ; exon_number 2 ; gene_id "NAP1L4--RNH1^NAP1L4^ENSG00000205531.13" ; gene_name NAP1L4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011009.12" ; havana_transcript "OTTHUMT00000030273.4" ; hgnc_id "HGNC:7640" ; level 2 ; orig_coord_info "chr11,2979207,2979220,-" ; protein_id "ENSP00000369915.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NAP1L4--RNH1^ENST00000380542.9" ; transcript_name "NAP1L4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NAV2-AS3--SPON1 HAVANA gene 5599 24630 . + . FI_gene_label "SPON1^ENSG00000262655.4" ; ID "NAV2-AS3--SPON1^SPON1^ENSG00000262655.4" ; ccdsid "CCDS73262.1" ; exon_id "ENSE00002638217.3" ; exon_number 1 ; gene_id "NAV2-AS3--SPON1^SPON1^ENSG00000262655.4" ; gene_name SPON1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181576.4" ; havana_transcript "OTTHUMT00000456656.4" ; hgnc_id "HGNC:11252" ; level 2 ; orig_coord_info "chr11,13962905,13963142,+" ; protein_id "ENSP00000460236.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NAV2-AS3--SPON1^ENST00000576479.4" ; transcript_name "SPON1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NAV2-AS3--SPON1 HAVANA mRNA 5599 24630 . + . FI_gene_label "SPON1^ENSG00000262655.4" ; ID "NAV2-AS3--SPON1^ENST00000576479.4" ; Parent "NAV2-AS3--SPON1^SPON1^ENSG00000262655.4" ; ccdsid "CCDS73262.1" ; exon_id "ENSE00002638217.3" ; exon_number 1 ; gene_id "NAV2-AS3--SPON1^SPON1^ENSG00000262655.4" ; gene_name SPON1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181576.4" ; havana_transcript "OTTHUMT00000456656.4" ; hgnc_id "HGNC:11252" ; level 2 ; orig_coord_info "chr11,13962905,13963142,+" ; protein_id "ENSP00000460236.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NAV2-AS3--SPON1^ENST00000576479.4" ; transcript_name "SPON1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NBPF4--LENG8-AS1 HAVANA gene 1015 15792 . + . FI_gene_label "NBPF4^ENSG00000196427.13" ; ID "NBPF4--LENG8-AS1^NBPF4^ENSG00000196427.13" ; ccdsid "CCDS44182.1" ; exon_id "ENSE00003539942.1" ; exon_number 2 ; gene_id "NBPF4--LENG8-AS1^NBPF4^ENSG00000196427.13" ; gene_name NBPF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011318.5" ; havana_transcript "OTTHUMT00000031255.5" ; hgnc_id "HGNC:26550" ; level 2 ; orig_coord_info "chr1,108243584,108243761,-" ; protein_id "ENSP00000389237.2" ; tag basic CCDS ; transcript_id "NBPF4--LENG8-AS1^ENST00000415641.7" ; transcript_name "NBPF4-201" ; transcript_support_level 2 ; transcript_type protein_coding
NBPF4--LENG8-AS1 HAVANA mRNA 1015 15792 . + . FI_gene_label "NBPF4^ENSG00000196427.13" ; ID "NBPF4--LENG8-AS1^ENST00000415641.7" ; Parent "NBPF4--LENG8-AS1^NBPF4^ENSG00000196427.13" ; ccdsid "CCDS44182.1" ; exon_id "ENSE00003539942.1" ; exon_number 2 ; gene_id "NBPF4--LENG8-AS1^NBPF4^ENSG00000196427.13" ; gene_name NBPF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011318.5" ; havana_transcript "OTTHUMT00000031255.5" ; hgnc_id "HGNC:26550" ; level 2 ; orig_coord_info "chr1,108243584,108243761,-" ; protein_id "ENSP00000389237.2" ; tag basic CCDS ; transcript_id "NBPF4--LENG8-AS1^ENST00000415641.7" ; transcript_name "NBPF4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NF1--AC090616.2 HAVANA gene 1001 71265 . + . FI_gene_label "NF1^ENSG00000196712.18" ; ID "NF1--AC090616.2^NF1^ENSG00000196712.18" ; ccdsid "CCDS11264.1" ; exon_id "ENSE00003803084.1" ; exon_number 1 ; gene_id "NF1--AC090616.2^NF1^ENSG00000196712.18" ; gene_name NF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132871.10" ; havana_transcript "OTTHUMT00000256352.1" ; hgnc_id "HGNC:7765" ; level 2 ; orig_coord_info "chr17,31095310,31095369,+" ; protein_id "ENSP00000348498.3" ; tag basic appris_principal_4 CCDS ; transcript_id "NF1--AC090616.2^ENST00000356175.7" ; transcript_name "NF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NF1--AC090616.2 HAVANA mRNA 1001 71265 . + . FI_gene_label "NF1^ENSG00000196712.18" ; ID "NF1--AC090616.2^ENST00000356175.7" ; Parent "NF1--AC090616.2^NF1^ENSG00000196712.18" ; ccdsid "CCDS11264.1" ; exon_id "ENSE00003803084.1" ; exon_number 1 ; gene_id "NF1--AC090616.2^NF1^ENSG00000196712.18" ; gene_name NF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132871.10" ; havana_transcript "OTTHUMT00000256352.1" ; hgnc_id "HGNC:7765" ; level 2 ; orig_coord_info "chr17,31095310,31095369,+" ; protein_id "ENSP00000348498.3" ; tag basic appris_principal_4 CCDS ; transcript_id "NF1--AC090616.2^ENST00000356175.7" ; transcript_name "NF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPHP3--ACAD11 HAVANA gene 34363 56719 . + . FI_gene_label "ACAD11^ENSG00000240303.8" ; ID "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; ccdsid "CCDS3074.1" ; exon_id "ENSE00001878063.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; gene_name ACAD11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159780.6" ; havana_transcript "OTTHUMT00000357279.4" ; hgnc_id "HGNC:30211" ; level 2 ; orig_coord_info "chr3,132659603,132659751,-" ; protein_id "ENSP00000264990.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000264990.11" ; transcript_name "ACAD11-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPHP3--ACAD11 HAVANA mRNA 34363 56719 . + . FI_gene_label "ACAD11^ENSG00000240303.8" ; ID "NPHP3--ACAD11^ENST00000264990.11" ; Parent "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; ccdsid "CCDS3074.1" ; exon_id "ENSE00001878063.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; gene_name ACAD11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159780.6" ; havana_transcript "OTTHUMT00000357279.4" ; hgnc_id "HGNC:30211" ; level 2 ; orig_coord_info "chr3,132659603,132659751,-" ; protein_id "ENSP00000264990.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000264990.11" ; transcript_name "ACAD11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPHP3--ACAD11 HAVANA gene 1006 31089 . + . FI_gene_label "NPHP3^ENSG00000113971.20" ; ID "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; ccdsid "CCDS3078.1" ; exon_id "ENSE00001810363.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; gene_name NPHP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159713.4" ; havana_transcript "OTTHUMT00000357020.3" ; hgnc_id "HGNC:7907" ; level 2 ; orig_coord_info "chr3,132721963,132722355,-" ; protein_id "ENSP00000338766.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000337331.10" ; transcript_name "NPHP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPHP3--ACAD11 HAVANA mRNA 1006 31089 . + . FI_gene_label "NPHP3^ENSG00000113971.20" ; ID "NPHP3--ACAD11^ENST00000337331.10" ; Parent "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; ccdsid "CCDS3078.1" ; exon_id "ENSE00001810363.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; gene_name NPHP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159713.4" ; havana_transcript "OTTHUMT00000357020.3" ; hgnc_id "HGNC:7907" ; level 2 ; orig_coord_info "chr3,132721963,132722355,-" ; protein_id "ENSP00000338766.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000337331.10" ; transcript_name "NPHP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PHRF1--CARS1 HAVANA gene 1001 17931 . + . FI_gene_label "PHRF1^ENSG00000070047.13" ; ID "PHRF1--CARS1^PHRF1^ENSG00000070047.13" ; ccdsid "CCDS65988.1" ; exon_id "ENSE00001206357.3" ; exon_number 2 ; gene_id "PHRF1--CARS1^PHRF1^ENSG00000070047.13" ; gene_name PHRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165141.7" ; havana_transcript "OTTHUMT00000382133.2" ; hgnc_id "HGNC:24351" ; level 2 ; orig_coord_info "chr11,581513,581606,+" ; protein_id "ENSP00000264555.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PHRF1--CARS1^ENST00000264555.10" ; transcript_name "PHRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PHRF1--CARS1 HAVANA mRNA 1001 17931 . + . FI_gene_label "PHRF1^ENSG00000070047.13" ; ID "PHRF1--CARS1^ENST00000264555.10" ; Parent "PHRF1--CARS1^PHRF1^ENSG00000070047.13" ; ccdsid "CCDS65988.1" ; exon_id "ENSE00001206357.3" ; exon_number 2 ; gene_id "PHRF1--CARS1^PHRF1^ENSG00000070047.13" ; gene_name PHRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165141.7" ; havana_transcript "OTTHUMT00000382133.2" ; hgnc_id "HGNC:24351" ; level 2 ; orig_coord_info "chr11,581513,581606,+" ; protein_id "ENSP00000264555.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PHRF1--CARS1^ENST00000264555.10" ; transcript_name "PHRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PHRF1--CARS1 HAVANA gene 21127 46303 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "PHRF1--CARS1^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "PHRF1--CARS1^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "PHRF1--CARS1^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PHRF1--CARS1 HAVANA mRNA 21127 46303 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "PHRF1--CARS1^ENST00000278224.13" ; Parent "PHRF1--CARS1^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "PHRF1--CARS1^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "PHRF1--CARS1^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PHRF1--CDHR5 HAVANA gene 1001 17931 . + . FI_gene_label "PHRF1^ENSG00000070047.13" ; ID "PHRF1--CDHR5^PHRF1^ENSG00000070047.13" ; ccdsid "CCDS65988.1" ; exon_id "ENSE00001206357.3" ; exon_number 2 ; gene_id "PHRF1--CDHR5^PHRF1^ENSG00000070047.13" ; gene_name PHRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165141.7" ; havana_transcript "OTTHUMT00000382133.2" ; hgnc_id "HGNC:24351" ; level 2 ; orig_coord_info "chr11,581513,581606,+" ; protein_id "ENSP00000264555.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PHRF1--CDHR5^ENST00000264555.10" ; transcript_name "PHRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PHRF1--CDHR5 HAVANA mRNA 1001 17931 . + . FI_gene_label "PHRF1^ENSG00000070047.13" ; ID "PHRF1--CDHR5^ENST00000264555.10" ; Parent "PHRF1--CDHR5^PHRF1^ENSG00000070047.13" ; ccdsid "CCDS65988.1" ; exon_id "ENSE00001206357.3" ; exon_number 2 ; gene_id "PHRF1--CDHR5^PHRF1^ENSG00000070047.13" ; gene_name PHRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165141.7" ; havana_transcript "OTTHUMT00000382133.2" ; hgnc_id "HGNC:24351" ; level 2 ; orig_coord_info "chr11,581513,581606,+" ; protein_id "ENSP00000264555.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PHRF1--CDHR5^ENST00000264555.10" ; transcript_name "PHRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PHRF1--CDHR5 HAVANA gene 21841 28446 . + . FI_gene_label "CDHR5^ENSG00000099834.19" ; ID "PHRF1--CDHR5^CDHR5^ENSG00000099834.19" ; ccdsid "CCDS7708.1" ; exon_id "ENSE00002160589.1" ; exon_number 1 ; gene_id "PHRF1--CDHR5^CDHR5^ENSG00000099834.19" ; gene_name CDHR5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132018.6" ; havana_transcript "OTTHUMT00000255024.3" ; hgnc_id "HGNC:7521" ; level 2 ; orig_coord_info "chr11,624818,624902,-" ; protein_id "ENSP00000345726.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "PHRF1--CDHR5^ENST00000349570.11" ; transcript_name "CDHR5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PHRF1--CDHR5 HAVANA mRNA 21841 28446 . + . FI_gene_label "CDHR5^ENSG00000099834.19" ; ID "PHRF1--CDHR5^ENST00000349570.11" ; Parent "PHRF1--CDHR5^CDHR5^ENSG00000099834.19" ; ccdsid "CCDS7708.1" ; exon_id "ENSE00002160589.1" ; exon_number 1 ; gene_id "PHRF1--CDHR5^CDHR5^ENSG00000099834.19" ; gene_name CDHR5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132018.6" ; havana_transcript "OTTHUMT00000255024.3" ; hgnc_id "HGNC:7521" ; level 2 ; orig_coord_info "chr11,624818,624902,-" ; protein_id "ENSP00000345726.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "PHRF1--CDHR5^ENST00000349570.11" ; transcript_name "CDHR5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLA2G4C--KCNN4 HAVANA gene 1036 27467 . + . FI_gene_label "PLA2G4C^ENSG00000105499.14" ; ID "PLA2G4C--KCNN4^PLA2G4C^ENSG00000105499.14" ; ccdsid "CCDS54286.1" ; exon_id "ENSE00003563888.1" ; exon_number 2 ; gene_id "PLA2G4C--KCNN4^PLA2G4C^ENSG00000105499.14" ; gene_name PLA2G4C ; gene_type protein_coding ; havana_gene "OTTHUMG00000183185.3" ; havana_transcript "OTTHUMT00000465549.1" ; hgnc_id "HGNC:9037" ; level 2 ; orig_coord_info "chr19,48106522,48106529,-" ; protein_id "ENSP00000346228.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PLA2G4C--KCNN4^ENST00000354276.7" ; transcript_name "PLA2G4C-201" ; transcript_support_level 2 ; transcript_type protein_coding
PLA2G4C--KCNN4 HAVANA mRNA 1036 27467 . + . FI_gene_label "PLA2G4C^ENSG00000105499.14" ; ID "PLA2G4C--KCNN4^ENST00000354276.7" ; Parent "PLA2G4C--KCNN4^PLA2G4C^ENSG00000105499.14" ; ccdsid "CCDS54286.1" ; exon_id "ENSE00003563888.1" ; exon_number 2 ; gene_id "PLA2G4C--KCNN4^PLA2G4C^ENSG00000105499.14" ; gene_name PLA2G4C ; gene_type protein_coding ; havana_gene "OTTHUMG00000183185.3" ; havana_transcript "OTTHUMT00000465549.1" ; hgnc_id "HGNC:9037" ; level 2 ; orig_coord_info "chr19,48106522,48106529,-" ; protein_id "ENSP00000346228.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PLA2G4C--KCNN4^ENST00000354276.7" ; transcript_name "PLA2G4C-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PLA2G4C--KCNN4 HAVANA gene 36282 39268 . + . FI_gene_label "KCNN4^ENSG00000104783.14" ; ID "PLA2G4C--KCNN4^KCNN4^ENSG00000104783.14" ; exon_id "ENSE00003168052.1" ; exon_number 1 ; gene_id "PLA2G4C--KCNN4^KCNN4^ENSG00000104783.14" ; gene_name KCNN4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182779.6" ; havana_transcript "OTTHUMT00000463599.1" ; hgnc_id "HGNC:6293" ; level 2 ; orig_coord_info "chr19,43769719,43769827,-" ; protein_id "ENSP00000471900.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "PLA2G4C--KCNN4^ENST00000598836.1" ; transcript_name "KCNN4-202" ; transcript_support_level 5 ; transcript_type protein_coding
PLA2G4C--KCNN4 HAVANA mRNA 36282 39268 . + . FI_gene_label "KCNN4^ENSG00000104783.14" ; ID "PLA2G4C--KCNN4^ENST00000598836.1" ; Parent "PLA2G4C--KCNN4^KCNN4^ENSG00000104783.14" ; exon_id "ENSE00003168052.1" ; exon_number 1 ; gene_id "PLA2G4C--KCNN4^KCNN4^ENSG00000104783.14" ; gene_name KCNN4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182779.6" ; havana_transcript "OTTHUMT00000463599.1" ; hgnc_id "HGNC:6293" ; level 2 ; orig_coord_info "chr19,43769719,43769827,-" ; protein_id "ENSP00000471900.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "PLA2G4C--KCNN4^ENST00000598836.1" ; transcript_name "KCNN4-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
POLR2J4--KIAA0895 HAVANA gene 7423 22939 . + . FI_gene_label "KIAA0895^ENSG00000164542.13" ; ID "POLR2J4--KIAA0895^KIAA0895^ENSG00000164542.13" ; ccdsid "CCDS43570.1" ; exon_id "ENSE00001256410.8" ; exon_number 1 ; gene_id "POLR2J4--KIAA0895^KIAA0895^ENSG00000164542.13" ; gene_name KIAA0895 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154939.3" ; havana_transcript "OTTHUMT00000337717.1" ; hgnc_id "HGNC:22206" ; level 2 ; orig_coord_info "chr7,36389967,36390074,-" ; protein_id "ENSP00000297063.6" ; tag basic CCDS ; transcript_id "POLR2J4--KIAA0895^ENST00000297063.10" ; transcript_name "KIAA0895-201" ; transcript_support_level 1 ; transcript_type protein_coding
POLR2J4--KIAA0895 HAVANA mRNA 7423 22939 . + . FI_gene_label "KIAA0895^ENSG00000164542.13" ; ID "POLR2J4--KIAA0895^ENST00000297063.10" ; Parent "POLR2J4--KIAA0895^KIAA0895^ENSG00000164542.13" ; ccdsid "CCDS43570.1" ; exon_id "ENSE00001256410.8" ; exon_number 1 ; gene_id "POLR2J4--KIAA0895^KIAA0895^ENSG00000164542.13" ; gene_name KIAA0895 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154939.3" ; havana_transcript "OTTHUMT00000337717.1" ; hgnc_id "HGNC:22206" ; level 2 ; orig_coord_info "chr7,36389967,36390074,-" ; protein_id "ENSP00000297063.6" ; tag basic CCDS ; transcript_id "POLR2J4--KIAA0895^ENST00000297063.10" ; transcript_name "KIAA0895-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPRJ--FTO HAVANA gene 53573 75321 . + . FI_gene_label "FTO^ENSG00000140718.21" ; ID "PTPRJ--FTO^FTO^ENSG00000140718.21" ; exon_id "ENSE00001924462.1" ; exon_number 1 ; gene_id "PTPRJ--FTO^FTO^ENSG00000140718.21" ; gene_name FTO ; gene_type protein_coding ; havana_gene "OTTHUMG00000158780.6" ; havana_transcript "OTTHUMT00000352203.2" ; hgnc_id "HGNC:24678" ; level 2 ; orig_coord_info "chr16,53934030,53934109,+" ; protein_id "ENSP00000268349.7" ; tag mRNA_start_NF cds_start_NF ; transcript_id "PTPRJ--FTO^ENST00000268349.7" ; transcript_name "FTO-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTPRJ--FTO HAVANA mRNA 53573 75321 . + . FI_gene_label "FTO^ENSG00000140718.21" ; ID "PTPRJ--FTO^ENST00000268349.7" ; Parent "PTPRJ--FTO^FTO^ENSG00000140718.21" ; exon_id "ENSE00001924462.1" ; exon_number 1 ; gene_id "PTPRJ--FTO^FTO^ENSG00000140718.21" ; gene_name FTO ; gene_type protein_coding ; havana_gene "OTTHUMG00000158780.6" ; havana_transcript "OTTHUMT00000352203.2" ; hgnc_id "HGNC:24678" ; level 2 ; orig_coord_info "chr16,53934030,53934109,+" ; protein_id "ENSP00000268349.7" ; tag mRNA_start_NF cds_start_NF ; transcript_id "PTPRJ--FTO^ENST00000268349.7" ; transcript_name "FTO-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPRJ--FTO HAVANA gene 1002 33309 . + . FI_gene_label "PTPRJ^ENSG00000149177.13" ; ID "PTPRJ--FTO^PTPRJ^ENSG00000149177.13" ; ccdsid "CCDS7945.1" ; exon_id "ENSE00002164746.2" ; exon_number 1 ; gene_id "PTPRJ--FTO^PTPRJ^ENSG00000149177.13" ; gene_name PTPRJ ; gene_type protein_coding ; havana_gene "OTTHUMG00000166573.4" ; havana_transcript "OTTHUMT00000390525.2" ; hgnc_id "HGNC:9673" ; level 2 ; orig_coord_info "chr11,47980913,47981008,+" ; protein_id "ENSP00000400010.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PTPRJ--FTO^ENST00000418331.7" ; transcript_name "PTPRJ-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTPRJ--FTO HAVANA mRNA 1002 33309 . + . FI_gene_label "PTPRJ^ENSG00000149177.13" ; ID "PTPRJ--FTO^ENST00000418331.7" ; Parent "PTPRJ--FTO^PTPRJ^ENSG00000149177.13" ; ccdsid "CCDS7945.1" ; exon_id "ENSE00002164746.2" ; exon_number 1 ; gene_id "PTPRJ--FTO^PTPRJ^ENSG00000149177.13" ; gene_name PTPRJ ; gene_type protein_coding ; havana_gene "OTTHUMG00000166573.4" ; havana_transcript "OTTHUMT00000390525.2" ; hgnc_id "HGNC:9673" ; level 2 ; orig_coord_info "chr11,47980913,47981008,+" ; protein_id "ENSP00000400010.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PTPRJ--FTO^ENST00000418331.7" ; transcript_name "PTPRJ-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
REEP3--PRR12 HAVANA gene 1001 13601 . + . FI_gene_label "REEP3^ENSG00000165476.14" ; ID "REEP3--PRR12^REEP3^ENSG00000165476.14" ; ccdsid "CCDS44411.1" ; exon_id "ENSE00003566253.2" ; exon_number 1 ; gene_id "REEP3--PRR12^REEP3^ENSG00000165476.14" ; gene_name REEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018318.6" ; havana_transcript "OTTHUMT00000048263.6" ; hgnc_id "HGNC:23711" ; level 2 ; orig_coord_info "chr10,63521546,63521577,+" ; protein_id "ENSP00000362863.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "REEP3--PRR12^ENST00000373758.5" ; transcript_name "REEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
REEP3--PRR12 HAVANA mRNA 1001 13601 . + . FI_gene_label "REEP3^ENSG00000165476.14" ; ID "REEP3--PRR12^ENST00000373758.5" ; Parent "REEP3--PRR12^REEP3^ENSG00000165476.14" ; ccdsid "CCDS44411.1" ; exon_id "ENSE00003566253.2" ; exon_number 1 ; gene_id "REEP3--PRR12^REEP3^ENSG00000165476.14" ; gene_name REEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018318.6" ; havana_transcript "OTTHUMT00000048263.6" ; hgnc_id "HGNC:23711" ; level 2 ; orig_coord_info "chr10,63521546,63521577,+" ; protein_id "ENSP00000362863.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "REEP3--PRR12^ENST00000373758.5" ; transcript_name "REEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
REEP3--PRR12 HAVANA gene 16602 33573 . + . FI_gene_label "PRR12^ENSG00000126464.14" ; ID "REEP3--PRR12^PRR12^ENSG00000126464.14" ; ccdsid "CCDS46143.1" ; exon_id "ENSE00001650300.3" ; exon_number 1 ; gene_id "REEP3--PRR12^PRR12^ENSG00000126464.14" ; gene_name PRR12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183275.3" ; havana_transcript "OTTHUMT00000465915.2" ; hgnc_id "HGNC:29217" ; level 1 ; orig_coord_info "chr19,49591655,49591740,+" ; protein_id "ENSP00000394510.1" ; tag basic MANE_Select appris_principal_2 exp_conf CCDS ; transcript_id "REEP3--PRR12^ENST00000418929.7" ; transcript_name "PRR12-201" ; transcript_support_level 5 ; transcript_type protein_coding
REEP3--PRR12 HAVANA mRNA 16602 33573 . + . FI_gene_label "PRR12^ENSG00000126464.14" ; ID "REEP3--PRR12^ENST00000418929.7" ; Parent "REEP3--PRR12^PRR12^ENSG00000126464.14" ; ccdsid "CCDS46143.1" ; exon_id "ENSE00001650300.3" ; exon_number 1 ; gene_id "REEP3--PRR12^PRR12^ENSG00000126464.14" ; gene_name PRR12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183275.3" ; havana_transcript "OTTHUMT00000465915.2" ; hgnc_id "HGNC:29217" ; level 1 ; orig_coord_info "chr19,49591655,49591740,+" ; protein_id "ENSP00000394510.1" ; tag basic MANE_Select appris_principal_2 exp_conf CCDS ; transcript_id "REEP3--PRR12^ENST00000418929.7" ; transcript_name "PRR12-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
REEP3--PRRG2 HAVANA gene 17272 22424 . + . FI_gene_label "PRRG2^ENSG00000126460.11" ; ID "REEP3--PRRG2^PRRG2^ENSG00000126460.11" ; ccdsid "CCDS12773.1" ; exon_id "ENSE00001192563.6" ; exon_number 2 ; gene_id "REEP3--PRRG2^PRRG2^ENSG00000126460.11" ; gene_name PRRG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183153.3" ; havana_transcript "OTTHUMT00000465257.2" ; hgnc_id "HGNC:9470" ; level 2 ; orig_coord_info "chr19,49583220,49583304,+" ; protein_id "ENSP00000246794.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "REEP3--PRRG2^ENST00000246794.10" ; transcript_name "PRRG2-201" ; transcript_support_level 2 ; transcript_type protein_coding
REEP3--PRRG2 HAVANA mRNA 17272 22424 . + . FI_gene_label "PRRG2^ENSG00000126460.11" ; ID "REEP3--PRRG2^ENST00000246794.10" ; Parent "REEP3--PRRG2^PRRG2^ENSG00000126460.11" ; ccdsid "CCDS12773.1" ; exon_id "ENSE00001192563.6" ; exon_number 2 ; gene_id "REEP3--PRRG2^PRRG2^ENSG00000126460.11" ; gene_name PRRG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183153.3" ; havana_transcript "OTTHUMT00000465257.2" ; hgnc_id "HGNC:9470" ; level 2 ; orig_coord_info "chr19,49583220,49583304,+" ; protein_id "ENSP00000246794.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "REEP3--PRRG2^ENST00000246794.10" ; transcript_name "PRRG2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
REEP3--PRRG2 HAVANA gene 1001 13601 . + . FI_gene_label "REEP3^ENSG00000165476.14" ; ID "REEP3--PRRG2^REEP3^ENSG00000165476.14" ; ccdsid "CCDS44411.1" ; exon_id "ENSE00003566253.2" ; exon_number 1 ; gene_id "REEP3--PRRG2^REEP3^ENSG00000165476.14" ; gene_name REEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018318.6" ; havana_transcript "OTTHUMT00000048263.6" ; hgnc_id "HGNC:23711" ; level 2 ; orig_coord_info "chr10,63521546,63521577,+" ; protein_id "ENSP00000362863.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "REEP3--PRRG2^ENST00000373758.5" ; transcript_name "REEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
REEP3--PRRG2 HAVANA mRNA 1001 13601 . + . FI_gene_label "REEP3^ENSG00000165476.14" ; ID "REEP3--PRRG2^ENST00000373758.5" ; Parent "REEP3--PRRG2^REEP3^ENSG00000165476.14" ; ccdsid "CCDS44411.1" ; exon_id "ENSE00003566253.2" ; exon_number 1 ; gene_id "REEP3--PRRG2^REEP3^ENSG00000165476.14" ; gene_name REEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018318.6" ; havana_transcript "OTTHUMT00000048263.6" ; hgnc_id "HGNC:23711" ; level 2 ; orig_coord_info "chr10,63521546,63521577,+" ; protein_id "ENSP00000362863.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "REEP3--PRRG2^ENST00000373758.5" ; transcript_name "REEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RET--SCT HAVANA gene 27474 28346 . + . FI_gene_label "SCT^ENSG00000070031.4" ; ID "RET--SCT^SCT^ENSG00000070031.4" ; ccdsid "CCDS7709.1" ; exon_id "ENSE00001291007.5" ; exon_number 1 ; gene_id "RET--SCT^SCT^ENSG00000070031.4" ; gene_name SCT ; gene_type protein_coding ; havana_gene "OTTHUMG00000133313.5" ; havana_transcript "OTTHUMT00000257111.5" ; hgnc_id "HGNC:10607" ; level 2 ; orig_coord_info "chr11,627073,627143,-" ; protein_id "ENSP00000176195.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RET--SCT^ENST00000176195.4" ; transcript_name "SCT-201" ; transcript_support_level 1 ; transcript_type protein_coding
RET--SCT HAVANA mRNA 27474 28346 . + . FI_gene_label "SCT^ENSG00000070031.4" ; ID "RET--SCT^ENST00000176195.4" ; Parent "RET--SCT^SCT^ENSG00000070031.4" ; ccdsid "CCDS7709.1" ; exon_id "ENSE00001291007.5" ; exon_number 1 ; gene_id "RET--SCT^SCT^ENSG00000070031.4" ; gene_name SCT ; gene_type protein_coding ; havana_gene "OTTHUMG00000133313.5" ; havana_transcript "OTTHUMT00000257111.5" ; hgnc_id "HGNC:10607" ; level 2 ; orig_coord_info "chr11,627073,627143,-" ; protein_id "ENSP00000176195.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RET--SCT^ENST00000176195.4" ; transcript_name "SCT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RET--SCT HAVANA gene 1006 21626 . + . FI_gene_label "RET^ENSG00000165731.20" ; ID "RET--SCT^RET^ENSG00000165731.20" ; ccdsid "CCDS53525.1" ; exon_id "ENSE00003744437.1" ; exon_number 1 ; gene_id "RET--SCT^RET^ENSG00000165731.20" ; gene_name RET ; gene_type protein_coding ; havana_gene "OTTHUMG00000018024.7" ; havana_transcript "OTTHUMT00000358138.3" ; hgnc_id "HGNC:9967" ; level 2 ; orig_coord_info "chr10,43077259,43077331,+" ; protein_id "ENSP00000344798.4" ; tag basic CCDS ; transcript_id "RET--SCT^ENST00000340058.6" ; transcript_name "RET-201" ; transcript_support_level 1 ; transcript_type protein_coding
RET--SCT HAVANA mRNA 1006 21626 . + . FI_gene_label "RET^ENSG00000165731.20" ; ID "RET--SCT^ENST00000340058.6" ; Parent "RET--SCT^RET^ENSG00000165731.20" ; ccdsid "CCDS53525.1" ; exon_id "ENSE00003744437.1" ; exon_number 1 ; gene_id "RET--SCT^RET^ENSG00000165731.20" ; gene_name RET ; gene_type protein_coding ; havana_gene "OTTHUMG00000018024.7" ; havana_transcript "OTTHUMT00000358138.3" ; hgnc_id "HGNC:9967" ; level 2 ; orig_coord_info "chr10,43077259,43077331,+" ; protein_id "ENSP00000344798.4" ; tag basic CCDS ; transcript_id "RET--SCT^ENST00000340058.6" ; transcript_name "RET-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
REXO5--AC006299.1 HAVANA gene 1099 21542 . + . FI_gene_label "REXO5^ENSG00000005189.20" ; ID "REXO5--AC006299.1^REXO5^ENSG00000005189.20" ; ccdsid "CCDS10591.1" ; exon_id "ENSE00003615038.1" ; exon_number 2 ; gene_id "REXO5--AC006299.1^REXO5^ENSG00000005189.20" ; gene_name REXO5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131556.5" ; havana_transcript "OTTHUMT00000254418.3" ; hgnc_id "HGNC:24661" ; level 2 ; orig_coord_info "chr16,20806954,20807091,+" ; protein_id "ENSP00000261377.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "REXO5--AC006299.1^ENST00000261377.11" ; transcript_name "REXO5-201" ; transcript_support_level 1 ; transcript_type protein_coding
REXO5--AC006299.1 HAVANA mRNA 1099 21542 . + . FI_gene_label "REXO5^ENSG00000005189.20" ; ID "REXO5--AC006299.1^ENST00000261377.11" ; Parent "REXO5--AC006299.1^REXO5^ENSG00000005189.20" ; ccdsid "CCDS10591.1" ; exon_id "ENSE00003615038.1" ; exon_number 2 ; gene_id "REXO5--AC006299.1^REXO5^ENSG00000005189.20" ; gene_name REXO5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131556.5" ; havana_transcript "OTTHUMT00000254418.3" ; hgnc_id "HGNC:24661" ; level 2 ; orig_coord_info "chr16,20806954,20807091,+" ; protein_id "ENSP00000261377.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "REXO5--AC006299.1^ENST00000261377.11" ; transcript_name "REXO5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RHOT1--AC104985.2 HAVANA gene 1001 25124 . + . FI_gene_label "RHOT1^ENSG00000126858.19" ; ID "RHOT1--AC104985.2^RHOT1^ENSG00000126858.19" ; ccdsid "CCDS32612.1" ; exon_id "ENSE00001519317.1" ; exon_number 1 ; gene_id "RHOT1--AC104985.2^RHOT1^ENSG00000126858.19" ; gene_name RHOT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179564.6" ; havana_transcript "OTTHUMT00000447097.1" ; hgnc_id "HGNC:21168" ; level 2 ; orig_coord_info "chr17,32142693,32142729,+" ; protein_id "ENSP00000334724.6" ; tag basic appris_principal_3 CCDS ; transcript_id "RHOT1--AC104985.2^ENST00000333942.10" ; transcript_name "RHOT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RHOT1--AC104985.2 HAVANA mRNA 1001 25124 . + . FI_gene_label "RHOT1^ENSG00000126858.19" ; ID "RHOT1--AC104985.2^ENST00000333942.10" ; Parent "RHOT1--AC104985.2^RHOT1^ENSG00000126858.19" ; ccdsid "CCDS32612.1" ; exon_id "ENSE00001519317.1" ; exon_number 1 ; gene_id "RHOT1--AC104985.2^RHOT1^ENSG00000126858.19" ; gene_name RHOT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179564.6" ; havana_transcript "OTTHUMT00000447097.1" ; hgnc_id "HGNC:21168" ; level 2 ; orig_coord_info "chr17,32142693,32142729,+" ; protein_id "ENSP00000334724.6" ; tag basic appris_principal_3 CCDS ; transcript_id "RHOT1--AC104985.2^ENST00000333942.10" ; transcript_name "RHOT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RHOT1--DTNA HAVANA gene 55619 78477 . + . FI_gene_label "DTNA^ENSG00000134769.22" ; ID "RHOT1--DTNA^DTNA^ENSG00000134769.22" ; ccdsid "CCDS56062.1" ; exon_id "ENSE00003609645.1" ; exon_number 2 ; gene_id "RHOT1--DTNA^DTNA^ENSG00000134769.22" ; gene_name DTNA ; gene_type protein_coding ; havana_gene "OTTHUMG00000132309.6" ; havana_transcript "OTTHUMT00000411818.1" ; hgnc_id "HGNC:3057" ; level 2 ; orig_coord_info "chr18,34820869,34820915,+" ; protein_id "ENSP00000269192.7" ; tag basic CCDS ; transcript_id "RHOT1--DTNA^ENST00000269192.11" ; transcript_name "DTNA-201" ; transcript_support_level 2 ; transcript_type protein_coding
RHOT1--DTNA HAVANA mRNA 55619 78477 . + . FI_gene_label "DTNA^ENSG00000134769.22" ; ID "RHOT1--DTNA^ENST00000269192.11" ; Parent "RHOT1--DTNA^DTNA^ENSG00000134769.22" ; ccdsid "CCDS56062.1" ; exon_id "ENSE00003609645.1" ; exon_number 2 ; gene_id "RHOT1--DTNA^DTNA^ENSG00000134769.22" ; gene_name DTNA ; gene_type protein_coding ; havana_gene "OTTHUMG00000132309.6" ; havana_transcript "OTTHUMT00000411818.1" ; hgnc_id "HGNC:3057" ; level 2 ; orig_coord_info "chr18,34820869,34820915,+" ; protein_id "ENSP00000269192.7" ; tag basic CCDS ; transcript_id "RHOT1--DTNA^ENST00000269192.11" ; transcript_name "DTNA-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RHOT1--DTNA HAVANA gene 1001 25124 . + . FI_gene_label "RHOT1^ENSG00000126858.19" ; ID "RHOT1--DTNA^RHOT1^ENSG00000126858.19" ; ccdsid "CCDS32612.1" ; exon_id "ENSE00001519317.1" ; exon_number 1 ; gene_id "RHOT1--DTNA^RHOT1^ENSG00000126858.19" ; gene_name RHOT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179564.6" ; havana_transcript "OTTHUMT00000447097.1" ; hgnc_id "HGNC:21168" ; level 2 ; orig_coord_info "chr17,32142693,32142729,+" ; protein_id "ENSP00000334724.6" ; tag basic appris_principal_3 CCDS ; transcript_id "RHOT1--DTNA^ENST00000333942.10" ; transcript_name "RHOT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RHOT1--DTNA HAVANA mRNA 1001 25124 . + . FI_gene_label "RHOT1^ENSG00000126858.19" ; ID "RHOT1--DTNA^ENST00000333942.10" ; Parent "RHOT1--DTNA^RHOT1^ENSG00000126858.19" ; ccdsid "CCDS32612.1" ; exon_id "ENSE00001519317.1" ; exon_number 1 ; gene_id "RHOT1--DTNA^RHOT1^ENSG00000126858.19" ; gene_name RHOT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179564.6" ; havana_transcript "OTTHUMT00000447097.1" ; hgnc_id "HGNC:21168" ; level 2 ; orig_coord_info "chr17,32142693,32142729,+" ; protein_id "ENSP00000334724.6" ; tag basic appris_principal_3 CCDS ; transcript_id "RHOT1--DTNA^ENST00000333942.10" ; transcript_name "RHOT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNH1--CARS1 HAVANA gene 15068 40244 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "RNH1--CARS1^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "RNH1--CARS1^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "RNH1--CARS1^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNH1--CARS1 HAVANA mRNA 15068 40244 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "RNH1--CARS1^ENST00000278224.13" ; Parent "RNH1--CARS1^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "RNH1--CARS1^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "RNH1--CARS1^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNH1--CARS1 HAVANA gene 1059 11869 . + . FI_gene_label "RNH1^ENSG00000023191.17" ; ID "RNH1--CARS1^RNH1^ENSG00000023191.17" ; ccdsid "CCDS7697.1" ; exon_id "ENSE00003500305.1" ; exon_number 3 ; gene_id "RNH1--CARS1^RNH1^ENSG00000023191.17" ; gene_name RNH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000119086.10" ; havana_transcript "OTTHUMT00000384292.2" ; hgnc_id "HGNC:10074" ; level 2 ; orig_coord_info "chr11,502062,502162,-" ; protein_id "ENSP00000346402.2" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNH1--CARS1^ENST00000354420.7" ; transcript_name "RNH1-201" ; transcript_support_level 5 ; transcript_type protein_coding
RNH1--CARS1 HAVANA mRNA 1059 11869 . + . FI_gene_label "RNH1^ENSG00000023191.17" ; ID "RNH1--CARS1^ENST00000354420.7" ; Parent "RNH1--CARS1^RNH1^ENSG00000023191.17" ; ccdsid "CCDS7697.1" ; exon_id "ENSE00003500305.1" ; exon_number 3 ; gene_id "RNH1--CARS1^RNH1^ENSG00000023191.17" ; gene_name RNH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000119086.10" ; havana_transcript "OTTHUMT00000384292.2" ; hgnc_id "HGNC:10074" ; level 2 ; orig_coord_info "chr11,502062,502162,-" ; protein_id "ENSP00000346402.2" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNH1--CARS1^ENST00000354420.7" ; transcript_name "RNH1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SGF29--ZNF785 HAVANA gene 1006 8262 . + . FI_gene_label "SGF29^ENSG00000176476.9" ; ID "SGF29--ZNF785^SGF29^ENSG00000176476.9" ; ccdsid "CCDS10635.1" ; exon_id "ENSE00003574577.1" ; exon_number 2 ; gene_id "SGF29--ZNF785^SGF29^ENSG00000176476.9" ; gene_name SGF29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131763.2" ; havana_transcript "OTTHUMT00000254691.1" ; hgnc_id "HGNC:25156" ; level 2 ; orig_coord_info "chr16,28581070,28581144,+" ; protein_id "ENSP00000316114.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SGF29--ZNF785^ENST00000317058.8" ; transcript_name "SGF29-201" ; transcript_support_level 1 ; transcript_type protein_coding
SGF29--ZNF785 HAVANA mRNA 1006 8262 . + . FI_gene_label "SGF29^ENSG00000176476.9" ; ID "SGF29--ZNF785^ENST00000317058.8" ; Parent "SGF29--ZNF785^SGF29^ENSG00000176476.9" ; ccdsid "CCDS10635.1" ; exon_id "ENSE00003574577.1" ; exon_number 2 ; gene_id "SGF29--ZNF785^SGF29^ENSG00000176476.9" ; gene_name SGF29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131763.2" ; havana_transcript "OTTHUMT00000254691.1" ; hgnc_id "HGNC:25156" ; level 2 ; orig_coord_info "chr16,28581070,28581144,+" ; protein_id "ENSP00000316114.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SGF29--ZNF785^ENST00000317058.8" ; transcript_name "SGF29-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SGF29--ZNF785 HAVANA gene 11335 15698 . + . FI_gene_label "ZNF785^ENSG00000197162.10" ; ID "SGF29--ZNF785^ZNF785^ENSG00000197162.10" ; ccdsid "CCDS10685.1" ; exon_id "ENSE00001925588.2" ; exon_number 1 ; gene_id "SGF29--ZNF785^ZNF785^ENSG00000197162.10" ; gene_name ZNF785 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176950.4" ; havana_transcript "OTTHUMT00000255529.3" ; hgnc_id "HGNC:26496" ; level 2 ; orig_coord_info "chr16,30585407,30585611,-" ; protein_id "ENSP00000378642.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SGF29--ZNF785^ENST00000395216.3" ; transcript_name "ZNF785-201" ; transcript_support_level 1 ; transcript_type protein_coding
SGF29--ZNF785 HAVANA mRNA 11335 15698 . + . FI_gene_label "ZNF785^ENSG00000197162.10" ; ID "SGF29--ZNF785^ENST00000395216.3" ; Parent "SGF29--ZNF785^ZNF785^ENSG00000197162.10" ; ccdsid "CCDS10685.1" ; exon_id "ENSE00001925588.2" ; exon_number 1 ; gene_id "SGF29--ZNF785^ZNF785^ENSG00000197162.10" ; gene_name ZNF785 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176950.4" ; havana_transcript "OTTHUMT00000255529.3" ; hgnc_id "HGNC:26496" ; level 2 ; orig_coord_info "chr16,30585407,30585611,-" ; protein_id "ENSP00000378642.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SGF29--ZNF785^ENST00000395216.3" ; transcript_name "ZNF785-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNX29--NAV2 HAVANA gene 42570 97802 . + . FI_gene_label "NAV2^ENSG00000166833.22" ; ID "SNX29--NAV2^NAV2^ENSG00000166833.22" ; ccdsid "CCDS7850.1" ; exon_id "ENSE00003846126.1" ; exon_number 1 ; gene_id "SNX29--NAV2^NAV2^ENSG00000166833.22" ; gene_name NAV2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151837.7" ; havana_transcript "OTTHUMT00000324114.1" ; hgnc_id "HGNC:15997" ; level 2 ; orig_coord_info "chr11,19713696,19713962,+" ; protein_id "ENSP00000309577.6" ; tag basic MANE_Select CCDS ; transcript_id "SNX29--NAV2^ENST00000349880.9" ; transcript_name "NAV2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNX29--NAV2 HAVANA mRNA 42570 97802 . + . FI_gene_label "NAV2^ENSG00000166833.22" ; ID "SNX29--NAV2^ENST00000349880.9" ; Parent "SNX29--NAV2^NAV2^ENSG00000166833.22" ; ccdsid "CCDS7850.1" ; exon_id "ENSE00003846126.1" ; exon_number 1 ; gene_id "SNX29--NAV2^NAV2^ENSG00000166833.22" ; gene_name NAV2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151837.7" ; havana_transcript "OTTHUMT00000324114.1" ; hgnc_id "HGNC:15997" ; level 2 ; orig_coord_info "chr11,19713696,19713962,+" ; protein_id "ENSP00000309577.6" ; tag basic MANE_Select CCDS ; transcript_id "SNX29--NAV2^ENST00000349880.9" ; transcript_name "NAV2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNX29--NAV2 HAVANA gene 23819 27354 . + . FI_gene_label "SNX29^ENSG00000048471.14" ; ID "SNX29--NAV2^SNX29^ENSG00000048471.14" ; exon_id "ENSE00002616399.1" ; exon_number 1 ; gene_id "SNX29--NAV2^SNX29^ENSG00000048471.14" ; gene_name SNX29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129827.4" ; havana_transcript "OTTHUMT00000422625.1" ; hgnc_id "HGNC:30542" ; level 2 ; orig_coord_info "chr16,12356253,12356279,+" ; protein_id "ENSP00000455327.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "SNX29--NAV2^ENST00000562510.1" ; transcript_name "SNX29-201" ; transcript_support_level 3 ; transcript_type protein_coding
SNX29--NAV2 HAVANA mRNA 23819 27354 . + . FI_gene_label "SNX29^ENSG00000048471.14" ; ID "SNX29--NAV2^ENST00000562510.1" ; Parent "SNX29--NAV2^SNX29^ENSG00000048471.14" ; exon_id "ENSE00002616399.1" ; exon_number 1 ; gene_id "SNX29--NAV2^SNX29^ENSG00000048471.14" ; gene_name SNX29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129827.4" ; havana_transcript "OTTHUMT00000422625.1" ; hgnc_id "HGNC:30542" ; level 2 ; orig_coord_info "chr16,12356253,12356279,+" ; protein_id "ENSP00000455327.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "SNX29--NAV2^ENST00000562510.1" ; transcript_name "SNX29-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^ENST00000427199.3" ; Parent "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^ENST00000456936.4" ; Parent "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRPM2--CU633967.1 HAVANA gene 2625 36599 . + . FI_gene_label "TRPM2^ENSG00000142185.16" ; ID "TRPM2--CU633967.1^TRPM2^ENSG00000142185.16" ; exon_id "ENSE00001877735.1" ; exon_number 1 ; gene_id "TRPM2--CU633967.1^TRPM2^ENSG00000142185.16" ; gene_name TRPM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040840.5" ; havana_transcript "OTTHUMT00000098087.1" ; hgnc_id "HGNC:12339" ; level 2 ; orig_coord_info "chr21,44353701,44353865,+" ; protein_id "ENSP00000300481.9" ; tag basic ; transcript_id "TRPM2--CU633967.1^ENST00000300481.13" ; transcript_name "TRPM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRPM2--CU633967.1 HAVANA mRNA 2625 36599 . + . FI_gene_label "TRPM2^ENSG00000142185.16" ; ID "TRPM2--CU633967.1^ENST00000300481.13" ; Parent "TRPM2--CU633967.1^TRPM2^ENSG00000142185.16" ; exon_id "ENSE00001877735.1" ; exon_number 1 ; gene_id "TRPM2--CU633967.1^TRPM2^ENSG00000142185.16" ; gene_name TRPM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040840.5" ; havana_transcript "OTTHUMT00000098087.1" ; hgnc_id "HGNC:12339" ; level 2 ; orig_coord_info "chr21,44353701,44353865,+" ; protein_id "ENSP00000300481.9" ; tag basic ; transcript_id "TRPM2--CU633967.1^ENST00000300481.13" ; transcript_name "TRPM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTC6--MIPOL1 ENSEMBL gene 25637 41624 . + . FI_gene_label "TTC6^ENSG00000139865.16" ; ID "TTC6--MIPOL1^TTC6^ENSG00000139865.16" ; exon_id "ENSE00003549424.1" ; exon_number 2 ; gene_id "TTC6--MIPOL1^TTC6^ENSG00000139865.16" ; gene_name TTC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157369.8" ; hgnc_id "HGNC:19739" ; level 3 ; orig_coord_info "chr14,37796310,37796370,+" ; protein_id "ENSP00000267368.7" ; tag basic ; transcript_id "TTC6--MIPOL1^ENST00000267368.11" ; transcript_name "TTC6-201" ; transcript_support_level 5 ; transcript_type protein_coding
TTC6--MIPOL1 ENSEMBL mRNA 25637 41624 . + . FI_gene_label "TTC6^ENSG00000139865.16" ; ID "TTC6--MIPOL1^ENST00000267368.11" ; Parent "TTC6--MIPOL1^TTC6^ENSG00000139865.16" ; exon_id "ENSE00003549424.1" ; exon_number 2 ; gene_id "TTC6--MIPOL1^TTC6^ENSG00000139865.16" ; gene_name TTC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157369.8" ; hgnc_id "HGNC:19739" ; level 3 ; orig_coord_info "chr14,37796310,37796370,+" ; protein_id "ENSP00000267368.7" ; tag basic ; transcript_id "TTC6--MIPOL1^ENST00000267368.11" ; transcript_name "TTC6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TTC6--MIPOL1 HAVANA gene 55184 98633 . + . FI_gene_label "MIPOL1^ENSG00000151338.18" ; ID "TTC6--MIPOL1^MIPOL1^ENSG00000151338.18" ; ccdsid "CCDS9664.1" ; exon_id "ENSE00003679602.1" ; exon_number 4 ; gene_id "TTC6--MIPOL1^MIPOL1^ENSG00000151338.18" ; gene_name MIPOL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140252.3" ; havana_transcript "OTTHUMT00000276734.1" ; hgnc_id "HGNC:21460" ; level 2 ; orig_coord_info "chr14,37247889,37247907,+" ; protein_id "ENSP00000333539.7" ; tag basic appris_principal_2 CCDS ; transcript_id "TTC6--MIPOL1^ENST00000327441.11" ; transcript_name "MIPOL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTC6--MIPOL1 HAVANA mRNA 55184 98633 . + . FI_gene_label "MIPOL1^ENSG00000151338.18" ; ID "TTC6--MIPOL1^ENST00000327441.11" ; Parent "TTC6--MIPOL1^MIPOL1^ENSG00000151338.18" ; ccdsid "CCDS9664.1" ; exon_id "ENSE00003679602.1" ; exon_number 4 ; gene_id "TTC6--MIPOL1^MIPOL1^ENSG00000151338.18" ; gene_name MIPOL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140252.3" ; havana_transcript "OTTHUMT00000276734.1" ; hgnc_id "HGNC:21460" ; level 2 ; orig_coord_info "chr14,37247889,37247907,+" ; protein_id "ENSP00000333539.7" ; tag basic appris_principal_2 CCDS ; transcript_id "TTC6--MIPOL1^ENST00000327441.11" ; transcript_name "MIPOL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
XPO6--SNX29 HAVANA gene 1001 34179 . + . FI_gene_label "XPO6^ENSG00000169180.12" ; ID "XPO6--SNX29^XPO6^ENSG00000169180.12" ; ccdsid "CCDS42135.1" ; exon_id "ENSE00001486703.2" ; exon_number 1 ; gene_id "XPO6--SNX29^XPO6^ENSG00000169180.12" ; gene_name XPO6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176782.9" ; havana_transcript "OTTHUMT00000433732.1" ; hgnc_id "HGNC:19733" ; level 2 ; orig_coord_info "chr16,28211366,28211368,-" ; protein_id "ENSP00000302790.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "XPO6--SNX29^ENST00000304658.10" ; transcript_name "XPO6-201" ; transcript_support_level 1 ; transcript_type protein_coding
XPO6--SNX29 HAVANA mRNA 1001 34179 . + . FI_gene_label "XPO6^ENSG00000169180.12" ; ID "XPO6--SNX29^ENST00000304658.10" ; Parent "XPO6--SNX29^XPO6^ENSG00000169180.12" ; ccdsid "CCDS42135.1" ; exon_id "ENSE00001486703.2" ; exon_number 1 ; gene_id "XPO6--SNX29^XPO6^ENSG00000169180.12" ; gene_name XPO6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176782.9" ; havana_transcript "OTTHUMT00000433732.1" ; hgnc_id "HGNC:19733" ; level 2 ; orig_coord_info "chr16,28211366,28211368,-" ; protein_id "ENSP00000302790.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "XPO6--SNX29^ENST00000304658.10" ; transcript_name "XPO6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
XPO6--SNX29 HAVANA gene 59998 63533 . + . FI_gene_label "SNX29^ENSG00000048471.14" ; ID "XPO6--SNX29^SNX29^ENSG00000048471.14" ; exon_id "ENSE00002616399.1" ; exon_number 1 ; gene_id "XPO6--SNX29^SNX29^ENSG00000048471.14" ; gene_name SNX29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129827.4" ; havana_transcript "OTTHUMT00000422625.1" ; hgnc_id "HGNC:30542" ; level 2 ; orig_coord_info "chr16,12356253,12356279,+" ; protein_id "ENSP00000455327.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "XPO6--SNX29^ENST00000562510.1" ; transcript_name "SNX29-201" ; transcript_support_level 3 ; transcript_type protein_coding
XPO6--SNX29 HAVANA mRNA 59998 63533 . + . FI_gene_label "SNX29^ENSG00000048471.14" ; ID "XPO6--SNX29^ENST00000562510.1" ; Parent "XPO6--SNX29^SNX29^ENSG00000048471.14" ; exon_id "ENSE00002616399.1" ; exon_number 1 ; gene_id "XPO6--SNX29^SNX29^ENSG00000048471.14" ; gene_name SNX29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129827.4" ; havana_transcript "OTTHUMT00000422625.1" ; hgnc_id "HGNC:30542" ; level 2 ; orig_coord_info "chr16,12356253,12356279,+" ; protein_id "ENSP00000455327.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "XPO6--SNX29^ENST00000562510.1" ; transcript_name "SNX29-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
ZNF174--AL137804.1 HAVANA gene 1001 5890 . + . FI_gene_label "ZNF174^ENSG00000103343.13" ; ID "ZNF174--AL137804.1^ZNF174^ENSG00000103343.13" ; ccdsid "CCDS10504.1" ; exon_id "ENSE00001838202.2" ; exon_number 1 ; gene_id "ZNF174--AL137804.1^ZNF174^ENSG00000103343.13" ; gene_name ZNF174 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129358.3" ; havana_transcript "OTTHUMT00000251510.2" ; hgnc_id "HGNC:12963" ; level 2 ; orig_coord_info "chr16,3402005,3402406,+" ; protein_id "ENSP00000268655.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF174--AL137804.1^ENST00000268655.5" ; transcript_name "ZNF174-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF174--AL137804.1 HAVANA mRNA 1001 5890 . + . FI_gene_label "ZNF174^ENSG00000103343.13" ; ID "ZNF174--AL137804.1^ENST00000268655.5" ; Parent "ZNF174--AL137804.1^ZNF174^ENSG00000103343.13" ; ccdsid "CCDS10504.1" ; exon_id "ENSE00001838202.2" ; exon_number 1 ; gene_id "ZNF174--AL137804.1^ZNF174^ENSG00000103343.13" ; gene_name ZNF174 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129358.3" ; havana_transcript "OTTHUMT00000251510.2" ; hgnc_id "HGNC:12963" ; level 2 ; orig_coord_info "chr16,3402005,3402406,+" ; protein_id "ENSP00000268655.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF174--AL137804.1^ENST00000268655.5" ; transcript_name "ZNF174-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF174--DCDC1 HAVANA gene 1001 5890 . + . FI_gene_label "ZNF174^ENSG00000103343.13" ; ID "ZNF174--DCDC1^ZNF174^ENSG00000103343.13" ; ccdsid "CCDS10504.1" ; exon_id "ENSE00001838202.2" ; exon_number 1 ; gene_id "ZNF174--DCDC1^ZNF174^ENSG00000103343.13" ; gene_name ZNF174 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129358.3" ; havana_transcript "OTTHUMT00000251510.2" ; hgnc_id "HGNC:12963" ; level 2 ; orig_coord_info "chr16,3402005,3402406,+" ; protein_id "ENSP00000268655.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF174--DCDC1^ENST00000268655.5" ; transcript_name "ZNF174-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF174--DCDC1 HAVANA mRNA 1001 5890 . + . FI_gene_label "ZNF174^ENSG00000103343.13" ; ID "ZNF174--DCDC1^ENST00000268655.5" ; Parent "ZNF174--DCDC1^ZNF174^ENSG00000103343.13" ; ccdsid "CCDS10504.1" ; exon_id "ENSE00001838202.2" ; exon_number 1 ; gene_id "ZNF174--DCDC1^ZNF174^ENSG00000103343.13" ; gene_name ZNF174 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129358.3" ; havana_transcript "OTTHUMT00000251510.2" ; hgnc_id "HGNC:12963" ; level 2 ; orig_coord_info "chr16,3402005,3402406,+" ; protein_id "ENSP00000268655.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF174--DCDC1^ENST00000268655.5" ; transcript_name "ZNF174-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF174--DCDC1 HAVANA gene 48153 62760 . + . FI_gene_label "DCDC1^ENSG00000170959.14" ; ID "ZNF174--DCDC1^DCDC1^ENSG00000170959.14" ; exon_id "ENSE00001137284.4" ; exon_number 1 ; gene_id "ZNF174--DCDC1^DCDC1^ENSG00000170959.14" ; gene_name DCDC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150144.5" ; havana_transcript "OTTHUMT00000316534.1" ; hgnc_id "HGNC:20625" ; level 2 ; orig_coord_info "chr11,30906540,30906705,-" ; protein_id "ENSP00000306898.4" ; tag mRNA_start_NF cds_start_NF ; transcript_id "ZNF174--DCDC1^ENST00000303697.8" ; transcript_name "DCDC1-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
ZNF174--DCDC1 HAVANA mRNA 48153 62760 . + . FI_gene_label "DCDC1^ENSG00000170959.14" ; ID "ZNF174--DCDC1^ENST00000303697.8" ; Parent "ZNF174--DCDC1^DCDC1^ENSG00000170959.14" ; exon_id "ENSE00001137284.4" ; exon_number 1 ; gene_id "ZNF174--DCDC1^DCDC1^ENSG00000170959.14" ; gene_name DCDC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150144.5" ; havana_transcript "OTTHUMT00000316534.1" ; hgnc_id "HGNC:20625" ; level 2 ; orig_coord_info "chr11,30906540,30906705,-" ; protein_id "ENSP00000306898.4" ; tag mRNA_start_NF cds_start_NF ; transcript_id "ZNF174--DCDC1^ENST00000303697.8" ; transcript_name "DCDC1-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
AC006398.1--WIPF3 HAVANA gene 1001 4715 . + . FI_gene_label "AC006398.1^ENSG00000286487.1" ; ID "AC006398.1--WIPF3^AC006398.1^ENSG00000286487.1" ; exon_id "ENSE00003862351.1" ; exon_number 1 ; gene_id "AC006398.1--WIPF3^AC006398.1^ENSG00000286487.1" ; gene_name "AC006398.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194646.1" ; havana_transcript "OTTHUMT00000520284.1" ; level 2 ; orig_coord_info "chr7,31202831,31203128,+" ; tag basic TAGENE ; transcript_id "AC006398.1--WIPF3^ENST00000658525.1" ; transcript_name "AC006398.1-201" ; transcript_type lncRNA
AC006398.1--WIPF3 HAVANA RNA 1001 4715 . + . FI_gene_label "AC006398.1^ENSG00000286487.1" ; ID "AC006398.1--WIPF3^ENST00000658525.1" ; Parent "AC006398.1--WIPF3^AC006398.1^ENSG00000286487.1" ; exon_id "ENSE00003862351.1" ; exon_number 1 ; gene_id "AC006398.1--WIPF3^AC006398.1^ENSG00000286487.1" ; gene_name "AC006398.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194646.1" ; havana_transcript "OTTHUMT00000520284.1" ; level 2 ; orig_coord_info "chr7,31202831,31203128,+" ; tag basic TAGENE ; transcript_id "AC006398.1--WIPF3^ENST00000658525.1" ; transcript_name "AC006398.1-201" ; transcript_type lncRNA
L1 and L2 created:
AC006466.1--WIPF3 HAVANA gene 1001 1289 . + . FI_gene_label "AC006466.1^ENSG00000232887.1" ; ID "AC006466.1--WIPF3^AC006466.1^ENSG00000232887.1" ; exon_id "ENSE00001695437.1" ; exon_number 1 ; gene_id "AC006466.1--WIPF3^AC006466.1^ENSG00000232887.1" ; gene_name "AC006466.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000152818.1" ; havana_transcript "OTTHUMT00000328077.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr7,31119284,31119572,-" ; tag pseudo_consens basic ; transcript_id "AC006466.1--WIPF3^ENST00000438721.1" ; transcript_name "AC006466.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AC006466.1--WIPF3 HAVANA RNA 1001 1289 . + . FI_gene_label "AC006466.1^ENSG00000232887.1" ; ID "AC006466.1--WIPF3^ENST00000438721.1" ; Parent "AC006466.1--WIPF3^AC006466.1^ENSG00000232887.1" ; exon_id "ENSE00001695437.1" ; exon_number 1 ; gene_id "AC006466.1--WIPF3^AC006466.1^ENSG00000232887.1" ; gene_name "AC006466.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000152818.1" ; havana_transcript "OTTHUMT00000328077.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr7,31119284,31119572,-" ; tag pseudo_consens basic ; transcript_id "AC006466.1--WIPF3^ENST00000438721.1" ; transcript_name "AC006466.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AC024257.2--STAP2 HAVANA gene 1001 1147 . + . FI_gene_label "AC024257.2^ENSG00000258273.1" ; ID "AC024257.2--STAP2^AC024257.2^ENSG00000258273.1" ; exon_id "ENSE00002417367.1" ; exon_number 1 ; gene_id "AC024257.2--STAP2^AC024257.2^ENSG00000258273.1" ; gene_name "AC024257.2" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000169905.1" ; havana_transcript "OTTHUMT00000406517.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr12,48333755,48333901,-" ; tag basic ; transcript_id "AC024257.2--STAP2^ENST00000549699.1" ; transcript_name "AC024257.2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AC024257.2--STAP2 HAVANA RNA 1001 1147 . + . FI_gene_label "AC024257.2^ENSG00000258273.1" ; ID "AC024257.2--STAP2^ENST00000549699.1" ; Parent "AC024257.2--STAP2^AC024257.2^ENSG00000258273.1" ; exon_id "ENSE00002417367.1" ; exon_number 1 ; gene_id "AC024257.2--STAP2^AC024257.2^ENSG00000258273.1" ; gene_name "AC024257.2" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000169905.1" ; havana_transcript "OTTHUMT00000406517.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr12,48333755,48333901,-" ; tag basic ; transcript_id "AC024257.2--STAP2^ENST00000549699.1" ; transcript_name "AC024257.2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
AC079610.2--IKZF2 HAVANA gene 1001 2147 . + . FI_gene_label "AC079610.2^ENSG00000272519.1" ; ID "AC079610.2--IKZF2^AC079610.2^ENSG00000272519.1" ; exon_id "ENSE00003699505.1" ; exon_number 1 ; gene_id "AC079610.2--IKZF2^AC079610.2^ENSG00000272519.1" ; gene_name "AC079610.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185531.1" ; havana_transcript "OTTHUMT00000470662.1" ; level 2 ; orig_coord_info "chr2,213276072,213276152,-" ; tag basic ; transcript_id "AC079610.2--IKZF2^ENST00000606960.1" ; transcript_name "AC079610.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
AC079610.2--IKZF2 HAVANA RNA 1001 2147 . + . FI_gene_label "AC079610.2^ENSG00000272519.1" ; ID "AC079610.2--IKZF2^ENST00000606960.1" ; Parent "AC079610.2--IKZF2^AC079610.2^ENSG00000272519.1" ; exon_id "ENSE00003699505.1" ; exon_number 1 ; gene_id "AC079610.2--IKZF2^AC079610.2^ENSG00000272519.1" ; gene_name "AC079610.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185531.1" ; havana_transcript "OTTHUMT00000470662.1" ; level 2 ; orig_coord_info "chr2,213276072,213276152,-" ; tag basic ; transcript_id "AC079610.2--IKZF2^ENST00000606960.1" ; transcript_name "AC079610.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC079781.4--ASNS HAVANA gene 1001 1219 . + . FI_gene_label "AC079781.4^ENSG00000284627.1" ; ID "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; exon_id "ENSE00003813582.1" ; exon_number 1 ; gene_id "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; gene_name "AC079781.4" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192224.1" ; havana_transcript "OTTHUMT00000492944.1" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,97928082,97928300,-" ; tag non_submitted_evidence pseudo_consens basic ; transcript_id "AC079781.4--ASNS^ENST00000641908.1" ; transcript_name "AC079781.4-201" ; transcript_type transcribed_unprocessed_pseudogene
AC079781.4--ASNS HAVANA RNA 1001 1219 . + . FI_gene_label "AC079781.4^ENSG00000284627.1" ; ID "AC079781.4--ASNS^ENST00000641908.1" ; Parent "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; exon_id "ENSE00003813582.1" ; exon_number 1 ; gene_id "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; gene_name "AC079781.4" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192224.1" ; havana_transcript "OTTHUMT00000492944.1" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,97928082,97928300,-" ; tag non_submitted_evidence pseudo_consens basic ; transcript_id "AC079781.4--ASNS^ENST00000641908.1" ; transcript_name "AC079781.4-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC099842.1--SNX29 HAVANA gene 1001 2596 . + . FI_gene_label "AC099842.1^ENSG00000277803.1" ; ID "AC099842.1--SNX29^AC099842.1^ENSG00000277803.1" ; exon_id "ENSE00003754642.1" ; exon_number 1 ; gene_id "AC099842.1--SNX29^AC099842.1^ENSG00000277803.1" ; gene_name "AC099842.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000187732.1" ; havana_transcript "OTTHUMT00000475496.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr11,23886135,23886291,+" ; tag basic ; transcript_id "AC099842.1--SNX29^ENST00000619919.1" ; transcript_name "AC099842.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AC099842.1--SNX29 HAVANA RNA 1001 2596 . + . FI_gene_label "AC099842.1^ENSG00000277803.1" ; ID "AC099842.1--SNX29^ENST00000619919.1" ; Parent "AC099842.1--SNX29^AC099842.1^ENSG00000277803.1" ; exon_id "ENSE00003754642.1" ; exon_number 1 ; gene_id "AC099842.1--SNX29^AC099842.1^ENSG00000277803.1" ; gene_name "AC099842.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000187732.1" ; havana_transcript "OTTHUMT00000475496.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr11,23886135,23886291,+" ; tag basic ; transcript_id "AC099842.1--SNX29^ENST00000619919.1" ; transcript_name "AC099842.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AC245100.7--AC239800.1 HAVANA gene 5048 10737 . + . FI_gene_label "AC239800.1^ENSG00000223779.6" ; ID "AC245100.7--AC239800.1^AC239800.1^ENSG00000223779.6" ; exon_id "ENSE00001740173.2" ; exon_number 1 ; gene_id "AC245100.7--AC239800.1^AC239800.1^ENSG00000223779.6" ; gene_name "AC239800.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000041572.7" ; havana_transcript "OTTHUMT00000099551.4" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,143745249,143745426,+" ; tag basic ; transcript_id "AC245100.7--AC239800.1^ENST00000442049.3" ; transcript_name "AC239800.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AC245100.7--AC239800.1 HAVANA RNA 5048 10737 . + . FI_gene_label "AC239800.1^ENSG00000223779.6" ; ID "AC245100.7--AC239800.1^ENST00000442049.3" ; Parent "AC245100.7--AC239800.1^AC239800.1^ENSG00000223779.6" ; exon_id "ENSE00001740173.2" ; exon_number 1 ; gene_id "AC245100.7--AC239800.1^AC239800.1^ENSG00000223779.6" ; gene_name "AC239800.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000041572.7" ; havana_transcript "OTTHUMT00000099551.4" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,143745249,143745426,+" ; tag basic ; transcript_id "AC245100.7--AC239800.1^ENST00000442049.3" ; transcript_name "AC239800.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
AC245100.7--AC239800.1 HAVANA gene 1001 2047 . + . FI_gene_label "AC245100.7^ENSG00000285062.1" ; ID "AC245100.7--AC239800.1^AC245100.7^ENSG00000285062.1" ; exon_id "ENSE00003824017.1" ; exon_number 1 ; gene_id "AC245100.7--AC239800.1^AC245100.7^ENSG00000285062.1" ; gene_name "AC245100.7" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192550.1" ; havana_transcript "OTTHUMT00000495990.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,148459602,148459689,-" ; tag basic ; transcript_id "AC245100.7--AC239800.1^ENST00000645329.1" ; transcript_name "AC245100.7-201" ; transcript_type transcribed_unprocessed_pseudogene
AC245100.7--AC239800.1 HAVANA RNA 1001 2047 . + . FI_gene_label "AC245100.7^ENSG00000285062.1" ; ID "AC245100.7--AC239800.1^ENST00000645329.1" ; Parent "AC245100.7--AC239800.1^AC245100.7^ENSG00000285062.1" ; exon_id "ENSE00003824017.1" ; exon_number 1 ; gene_id "AC245100.7--AC239800.1^AC245100.7^ENSG00000285062.1" ; gene_name "AC245100.7" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192550.1" ; havana_transcript "OTTHUMT00000495990.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,148459602,148459689,-" ; tag basic ; transcript_id "AC245100.7--AC239800.1^ENST00000645329.1" ; transcript_name "AC245100.7-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AVL9--AC006398.1 HAVANA gene 33636 37350 . + . FI_gene_label "AC006398.1^ENSG00000286487.1" ; ID "AVL9--AC006398.1^AC006398.1^ENSG00000286487.1" ; exon_id "ENSE00003862351.1" ; exon_number 1 ; gene_id "AVL9--AC006398.1^AC006398.1^ENSG00000286487.1" ; gene_name "AC006398.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194646.1" ; havana_transcript "OTTHUMT00000520284.1" ; level 2 ; orig_coord_info "chr7,31202831,31203128,+" ; tag basic TAGENE ; transcript_id "AVL9--AC006398.1^ENST00000658525.1" ; transcript_name "AC006398.1-201" ; transcript_type lncRNA
AVL9--AC006398.1 HAVANA RNA 33636 37350 . + . FI_gene_label "AC006398.1^ENSG00000286487.1" ; ID "AVL9--AC006398.1^ENST00000658525.1" ; Parent "AVL9--AC006398.1^AC006398.1^ENSG00000286487.1" ; exon_id "ENSE00003862351.1" ; exon_number 1 ; gene_id "AVL9--AC006398.1^AC006398.1^ENSG00000286487.1" ; gene_name "AC006398.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194646.1" ; havana_transcript "OTTHUMT00000520284.1" ; level 2 ; orig_coord_info "chr7,31202831,31203128,+" ; tag basic TAGENE ; transcript_id "AVL9--AC006398.1^ENST00000658525.1" ; transcript_name "AC006398.1-201" ; transcript_type lncRNA
L1 and L2 created:
AVL9--AC006466.1 HAVANA gene 33636 33924 . + . FI_gene_label "AC006466.1^ENSG00000232887.1" ; ID "AVL9--AC006466.1^AC006466.1^ENSG00000232887.1" ; exon_id "ENSE00001695437.1" ; exon_number 1 ; gene_id "AVL9--AC006466.1^AC006466.1^ENSG00000232887.1" ; gene_name "AC006466.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000152818.1" ; havana_transcript "OTTHUMT00000328077.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr7,31119284,31119572,-" ; tag pseudo_consens basic ; transcript_id "AVL9--AC006466.1^ENST00000438721.1" ; transcript_name "AC006466.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AVL9--AC006466.1 HAVANA RNA 33636 33924 . + . FI_gene_label "AC006466.1^ENSG00000232887.1" ; ID "AVL9--AC006466.1^ENST00000438721.1" ; Parent "AVL9--AC006466.1^AC006466.1^ENSG00000232887.1" ; exon_id "ENSE00001695437.1" ; exon_number 1 ; gene_id "AVL9--AC006466.1^AC006466.1^ENSG00000232887.1" ; gene_name "AC006466.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000152818.1" ; havana_transcript "OTTHUMT00000328077.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr7,31119284,31119572,-" ; tag pseudo_consens basic ; transcript_id "AVL9--AC006466.1^ENST00000438721.1" ; transcript_name "AC006466.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AVL9--DPY19L2P3 HAVANA gene 33636 56339 . + . FI_gene_label "DPY19L2P3^ENSG00000227855.3" ; ID "AVL9--DPY19L2P3^DPY19L2P3^ENSG00000227855.3" ; exon_id "ENSE00001771090.1" ; exon_number 1 ; gene_id "AVL9--DPY19L2P3^DPY19L2P3^ENSG00000227855.3" ; gene_name DPY19L2P3 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000152749.4" ; havana_transcript "OTTHUMT00000327676.2" ; hgnc_id "HGNC:22367" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,29650227,29650407,+" ; tag basic ; transcript_id "AVL9--DPY19L2P3^ENST00000414296.2" ; transcript_name "DPY19L2P3-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AVL9--DPY19L2P3 HAVANA RNA 33636 56339 . + . FI_gene_label "DPY19L2P3^ENSG00000227855.3" ; ID "AVL9--DPY19L2P3^ENST00000414296.2" ; Parent "AVL9--DPY19L2P3^DPY19L2P3^ENSG00000227855.3" ; exon_id "ENSE00001771090.1" ; exon_number 1 ; gene_id "AVL9--DPY19L2P3^DPY19L2P3^ENSG00000227855.3" ; gene_name DPY19L2P3 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000152749.4" ; havana_transcript "OTTHUMT00000327676.2" ; hgnc_id "HGNC:22367" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,29650227,29650407,+" ; tag basic ; transcript_id "AVL9--DPY19L2P3^ENST00000414296.2" ; transcript_name "DPY19L2P3-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AVL9--LINC02617 HAVANA gene 33636 36284 . + . FI_gene_label "LINC02617^ENSG00000256288.1" ; ID "AVL9--LINC02617^LINC02617^ENSG00000256288.1" ; exon_id "ENSE00001720162.2" ; exon_number 1 ; gene_id "AVL9--LINC02617^LINC02617^ENSG00000256288.1" ; gene_name LINC02617 ; gene_type lncRNA ; havana_gene "OTTHUMG00000168572.1" ; havana_transcript "OTTHUMT00000400264.1" ; hgnc_id "HGNC:54089" ; level 2 ; orig_coord_info "chr12,10338045,10338292,-" ; tag basic ; transcript_id "AVL9--LINC02617^ENST00000539009.1" ; transcript_name "LINC02617-201" ; transcript_support_level 3 ; transcript_type lncRNA
AVL9--LINC02617 HAVANA RNA 33636 36284 . + . FI_gene_label "LINC02617^ENSG00000256288.1" ; ID "AVL9--LINC02617^ENST00000539009.1" ; Parent "AVL9--LINC02617^LINC02617^ENSG00000256288.1" ; exon_id "ENSE00001720162.2" ; exon_number 1 ; gene_id "AVL9--LINC02617^LINC02617^ENSG00000256288.1" ; gene_name LINC02617 ; gene_type lncRNA ; havana_gene "OTTHUMG00000168572.1" ; havana_transcript "OTTHUMT00000400264.1" ; hgnc_id "HGNC:54089" ; level 2 ; orig_coord_info "chr12,10338045,10338292,-" ; tag basic ; transcript_id "AVL9--LINC02617^ENST00000539009.1" ; transcript_name "LINC02617-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
BRSK2--ANO3-AS1 HAVANA gene 26791 31612 . + . FI_gene_label "ANO3-AS1^ENSG00000254819.2" ; ID "BRSK2--ANO3-AS1^ANO3-AS1^ENSG00000254819.2" ; exon_id "ENSE00003875821.1" ; exon_number 1 ; gene_id "BRSK2--ANO3-AS1^ANO3-AS1^ENSG00000254819.2" ; gene_name "ANO3-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166110.2" ; havana_transcript "OTTHUMT00000387863.2" ; hgnc_id "HGNC:54190" ; level 1 ; orig_coord_info "chr11,26330897,26331289,-" ; tag basic TAGENE exp_conf ; transcript_id "BRSK2--ANO3-AS1^ENST00000524858.2" ; transcript_name "ANO3-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
BRSK2--ANO3-AS1 HAVANA RNA 26791 31612 . + . FI_gene_label "ANO3-AS1^ENSG00000254819.2" ; ID "BRSK2--ANO3-AS1^ENST00000524858.2" ; Parent "BRSK2--ANO3-AS1^ANO3-AS1^ENSG00000254819.2" ; exon_id "ENSE00003875821.1" ; exon_number 1 ; gene_id "BRSK2--ANO3-AS1^ANO3-AS1^ENSG00000254819.2" ; gene_name "ANO3-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166110.2" ; havana_transcript "OTTHUMT00000387863.2" ; hgnc_id "HGNC:54190" ; level 1 ; orig_coord_info "chr11,26330897,26331289,-" ; tag basic TAGENE exp_conf ; transcript_id "BRSK2--ANO3-AS1^ENST00000524858.2" ; transcript_name "ANO3-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
C16orf72--AC099842.1 HAVANA gene 22525 24120 . + . FI_gene_label "AC099842.1^ENSG00000277803.1" ; ID "C16orf72--AC099842.1^AC099842.1^ENSG00000277803.1" ; exon_id "ENSE00003754642.1" ; exon_number 1 ; gene_id "C16orf72--AC099842.1^AC099842.1^ENSG00000277803.1" ; gene_name "AC099842.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000187732.1" ; havana_transcript "OTTHUMT00000475496.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr11,23886135,23886291,+" ; tag basic ; transcript_id "C16orf72--AC099842.1^ENST00000619919.1" ; transcript_name "AC099842.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
C16orf72--AC099842.1 HAVANA RNA 22525 24120 . + . FI_gene_label "AC099842.1^ENSG00000277803.1" ; ID "C16orf72--AC099842.1^ENST00000619919.1" ; Parent "C16orf72--AC099842.1^AC099842.1^ENSG00000277803.1" ; exon_id "ENSE00003754642.1" ; exon_number 1 ; gene_id "C16orf72--AC099842.1^AC099842.1^ENSG00000277803.1" ; gene_name "AC099842.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000187732.1" ; havana_transcript "OTTHUMT00000475496.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr11,23886135,23886291,+" ; tag basic ; transcript_id "C16orf72--AC099842.1^ENST00000619919.1" ; transcript_name "AC099842.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
C16orf72--AC100770.1 HAVANA gene 22525 22846 . + . FI_gene_label "AC100770.1^ENSG00000255454.1" ; ID "C16orf72--AC100770.1^AC100770.1^ENSG00000255454.1" ; exon_id "ENSE00002182250.1" ; exon_number 1 ; gene_id "C16orf72--AC100770.1^AC100770.1^ENSG00000255454.1" ; gene_name "AC100770.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166088.1" ; havana_transcript "OTTHUMT00000387790.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr11,25630720,25631041,+" ; tag basic ; transcript_id "C16orf72--AC100770.1^ENST00000532310.1" ; transcript_name "AC100770.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
C16orf72--AC100770.1 HAVANA RNA 22525 22846 . + . FI_gene_label "AC100770.1^ENSG00000255454.1" ; ID "C16orf72--AC100770.1^ENST00000532310.1" ; Parent "C16orf72--AC100770.1^AC100770.1^ENSG00000255454.1" ; exon_id "ENSE00002182250.1" ; exon_number 1 ; gene_id "C16orf72--AC100770.1^AC100770.1^ENSG00000255454.1" ; gene_name "AC100770.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166088.1" ; havana_transcript "OTTHUMT00000387790.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr11,25630720,25631041,+" ; tag basic ; transcript_id "C16orf72--AC100770.1^ENST00000532310.1" ; transcript_name "AC100770.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
C16orf72--AC138776.1 HAVANA gene 22525 42469 . + . FI_gene_label "AC138776.1^ENSG00000286406.1" ; ID "C16orf72--AC138776.1^AC138776.1^ENSG00000286406.1" ; exon_id "ENSE00003855687.1" ; exon_number 1 ; gene_id "C16orf72--AC138776.1^AC138776.1^ENSG00000286406.1" ; gene_name "AC138776.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193804.1" ; havana_transcript "OTTHUMT00000504859.1" ; level 2 ; orig_coord_info "chr22,11827523,11827658,+" ; tag RNA_Seq_supported_only basic ; transcript_id "C16orf72--AC138776.1^ENST00000657566.1" ; transcript_name "AC138776.1-201" ; transcript_type processed_transcript
C16orf72--AC138776.1 HAVANA RNA 22525 42469 . + . FI_gene_label "AC138776.1^ENSG00000286406.1" ; ID "C16orf72--AC138776.1^ENST00000657566.1" ; Parent "C16orf72--AC138776.1^AC138776.1^ENSG00000286406.1" ; exon_id "ENSE00003855687.1" ; exon_number 1 ; gene_id "C16orf72--AC138776.1^AC138776.1^ENSG00000286406.1" ; gene_name "AC138776.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193804.1" ; havana_transcript "OTTHUMT00000504859.1" ; level 2 ; orig_coord_info "chr22,11827523,11827658,+" ; tag RNA_Seq_supported_only basic ; transcript_id "C16orf72--AC138776.1^ENST00000657566.1" ; transcript_name "AC138776.1-201" ; transcript_type processed_transcript
L1 and L2 created:
C16orf72--FRG1GP HAVANA gene 22525 31062 . + . FI_gene_label "FRG1GP^ENSG00000283023.1" ; ID "C16orf72--FRG1GP^FRG1GP^ENSG00000283023.1" ; exon_id "ENSE00003784219.1" ; exon_number 1 ; gene_id "C16orf72--FRG1GP^FRG1GP^ENSG00000283023.1" ; gene_name FRG1GP ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000191578.1" ; havana_transcript "OTTHUMT00000488612.1" ; hgnc_id "HGNC:51766" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr22,12602466,12602527,+" ; tag basic ; transcript_id "C16orf72--FRG1GP^ENST00000634617.1" ; transcript_name "FRG1GP-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
C16orf72--FRG1GP HAVANA RNA 22525 31062 . + . FI_gene_label "FRG1GP^ENSG00000283023.1" ; ID "C16orf72--FRG1GP^ENST00000634617.1" ; Parent "C16orf72--FRG1GP^FRG1GP^ENSG00000283023.1" ; exon_id "ENSE00003784219.1" ; exon_number 1 ; gene_id "C16orf72--FRG1GP^FRG1GP^ENSG00000283023.1" ; gene_name FRG1GP ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000191578.1" ; havana_transcript "OTTHUMT00000488612.1" ; hgnc_id "HGNC:51766" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr22,12602466,12602527,+" ; tag basic ; transcript_id "C16orf72--FRG1GP^ENST00000634617.1" ; transcript_name "FRG1GP-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
C16orf72--LINC02686 HAVANA gene 22538 27483 . + . FI_gene_label "LINC02686^ENSG00000254594.5" ; ID "C16orf72--LINC02686^LINC02686^ENSG00000254594.5" ; exon_id "ENSE00002163319.1" ; exon_number 1 ; gene_id "C16orf72--LINC02686^LINC02686^ENSG00000254594.5" ; gene_name LINC02686 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166108.1" ; havana_transcript "OTTHUMT00000387857.1" ; hgnc_id "HGNC:54186" ; level 2 ; orig_coord_info "chr11,24262081,24262205,-" ; tag basic ; transcript_id "C16orf72--LINC02686^ENST00000527283.5" ; transcript_name "LINC02686-201" ; transcript_support_level 4 ; transcript_type lncRNA
C16orf72--LINC02686 HAVANA RNA 22538 27483 . + . FI_gene_label "LINC02686^ENSG00000254594.5" ; ID "C16orf72--LINC02686^ENST00000527283.5" ; Parent "C16orf72--LINC02686^LINC02686^ENSG00000254594.5" ; exon_id "ENSE00002163319.1" ; exon_number 1 ; gene_id "C16orf72--LINC02686^LINC02686^ENSG00000254594.5" ; gene_name LINC02686 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166108.1" ; havana_transcript "OTTHUMT00000387857.1" ; hgnc_id "HGNC:54186" ; level 2 ; orig_coord_info "chr11,24262081,24262205,-" ; tag basic ; transcript_id "C16orf72--LINC02686^ENST00000527283.5" ; transcript_name "LINC02686-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
C16orf72--LINC02699 HAVANA gene 22525 31819 . + . FI_gene_label "LINC02699^ENSG00000254456.6" ; ID "C16orf72--LINC02699^LINC02699^ENSG00000254456.6" ; exon_id "ENSE00003856509.1" ; exon_number 1 ; gene_id "C16orf72--LINC02699^LINC02699^ENSG00000254456.6" ; gene_name LINC02699 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166089.4" ; havana_transcript "OTTHUMT00000387791.2" ; hgnc_id "HGNC:54213" ; level 2 ; orig_coord_info "chr11,25734757,25734869,+" ; tag basic TAGENE ; transcript_id "C16orf72--LINC02699^ENST00000526327.6" ; transcript_name "LINC02699-201" ; transcript_support_level 3 ; transcript_type lncRNA
C16orf72--LINC02699 HAVANA RNA 22525 31819 . + . FI_gene_label "LINC02699^ENSG00000254456.6" ; ID "C16orf72--LINC02699^ENST00000526327.6" ; Parent "C16orf72--LINC02699^LINC02699^ENSG00000254456.6" ; exon_id "ENSE00003856509.1" ; exon_number 1 ; gene_id "C16orf72--LINC02699^LINC02699^ENSG00000254456.6" ; gene_name LINC02699 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166089.4" ; havana_transcript "OTTHUMT00000387791.2" ; hgnc_id "HGNC:54213" ; level 2 ; orig_coord_info "chr11,25734757,25734869,+" ; tag basic TAGENE ; transcript_id "C16orf72--LINC02699^ENST00000526327.6" ; transcript_name "LINC02699-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
C16orf72--NAP1L4P1 HAVANA gene 22525 23681 . + . FI_gene_label "NAP1L4P1^ENSG00000177173.5" ; ID "C16orf72--NAP1L4P1^NAP1L4P1^ENSG00000177173.5" ; exon_id "ENSE00001259294.2" ; exon_number 1 ; gene_id "C16orf72--NAP1L4P1^NAP1L4P1^ENSG00000177173.5" ; gene_name NAP1L4P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000022753.1" ; havana_transcript "OTTHUMT00000059044.1" ; hgnc_id "HGNC:39740" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,116532936,116534092,-" ; tag pseudo_consens basic ; transcript_id "C16orf72--NAP1L4P1^ENST00000319092.5" ; transcript_name "NAP1L4P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
C16orf72--NAP1L4P1 HAVANA RNA 22525 23681 . + . FI_gene_label "NAP1L4P1^ENSG00000177173.5" ; ID "C16orf72--NAP1L4P1^ENST00000319092.5" ; Parent "C16orf72--NAP1L4P1^NAP1L4P1^ENSG00000177173.5" ; exon_id "ENSE00001259294.2" ; exon_number 1 ; gene_id "C16orf72--NAP1L4P1^NAP1L4P1^ENSG00000177173.5" ; gene_name NAP1L4P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000022753.1" ; havana_transcript "OTTHUMT00000059044.1" ; hgnc_id "HGNC:39740" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,116532936,116534092,-" ; tag pseudo_consens basic ; transcript_id "C16orf72--NAP1L4P1^ENST00000319092.5" ; transcript_name "NAP1L4P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
CARS1--AC091196.1 HAVANA gene 29380 32430 . + . FI_gene_label "AC091196.1^ENSG00000285581.1" ; ID "CARS1--AC091196.1^AC091196.1^ENSG00000285581.1" ; exon_id "ENSE00003838976.1" ; exon_number 1 ; gene_id "CARS1--AC091196.1^AC091196.1^ENSG00000285581.1" ; gene_name "AC091196.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192951.1" ; havana_transcript "OTTHUMT00000499682.1" ; level 2 ; orig_coord_info "chr11,1465293,1467632,-" ; tag basic ; transcript_id "CARS1--AC091196.1^ENST00000650363.1" ; transcript_name "AC091196.1-201" ; transcript_type lncRNA
CARS1--AC091196.1 HAVANA RNA 29380 32430 . + . FI_gene_label "AC091196.1^ENSG00000285581.1" ; ID "CARS1--AC091196.1^ENST00000650363.1" ; Parent "CARS1--AC091196.1^AC091196.1^ENSG00000285581.1" ; exon_id "ENSE00003838976.1" ; exon_number 1 ; gene_id "CARS1--AC091196.1^AC091196.1^ENSG00000285581.1" ; gene_name "AC091196.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192951.1" ; havana_transcript "OTTHUMT00000499682.1" ; level 2 ; orig_coord_info "chr11,1465293,1467632,-" ; tag basic ; transcript_id "CARS1--AC091196.1^ENST00000650363.1" ; transcript_name "AC091196.1-201" ; transcript_type lncRNA
L1 and L2 created:
CARS1--LINC02683 HAVANA gene 29380 31063 . + . FI_gene_label "LINC02683^ENSG00000254438.1" ; ID "CARS1--LINC02683^LINC02683^ENSG00000254438.1" ; exon_id "ENSE00002175330.1" ; exon_number 1 ; gene_id "CARS1--LINC02683^LINC02683^ENSG00000254438.1" ; gene_name LINC02683 ; gene_type lncRNA ; havana_gene "OTTHUMG00000165750.1" ; havana_transcript "OTTHUMT00000386013.1" ; hgnc_id "HGNC:54179" ; level 2 ; orig_coord_info "chr11,13924692,13924863,-" ; tag basic ; transcript_id "CARS1--LINC02683^ENST00000532065.1" ; transcript_name "LINC02683-201" ; transcript_support_level 1 ; transcript_type lncRNA
CARS1--LINC02683 HAVANA RNA 29380 31063 . + . FI_gene_label "LINC02683^ENSG00000254438.1" ; ID "CARS1--LINC02683^ENST00000532065.1" ; Parent "CARS1--LINC02683^LINC02683^ENSG00000254438.1" ; exon_id "ENSE00002175330.1" ; exon_number 1 ; gene_id "CARS1--LINC02683^LINC02683^ENSG00000254438.1" ; gene_name LINC02683 ; gene_type lncRNA ; havana_gene "OTTHUMG00000165750.1" ; havana_transcript "OTTHUMT00000386013.1" ; hgnc_id "HGNC:54179" ; level 2 ; orig_coord_info "chr11,13924692,13924863,-" ; tag basic ; transcript_id "CARS1--LINC02683^ENST00000532065.1" ; transcript_name "LINC02683-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
CRYZL2P--SEC16B HAVANA RNA 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^ENST00000462729.2" ; Parent "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
DNAJC24--OLFM5P HAVANA gene 22352 27440 . + . FI_gene_label "OLFM5P^ENSG00000224295.3" ; ID "DNAJC24--OLFM5P^OLFM5P^ENSG00000224295.3" ; exon_id "ENSE00001642305.2" ; exon_number 1 ; gene_id "DNAJC24--OLFM5P^OLFM5P^ENSG00000224295.3" ; gene_name OLFM5P ; gene_type unitary_pseudogene ; havana_gene "OTTHUMG00000066889.3" ; havana_transcript "OTTHUMT00000143352.3" ; hgnc_id "HGNC:51927" ; level 2 ; ont "PGO:0000006" ; orig_coord_info "chr11,5524886,5524955,-" ; tag basic ; transcript_id "DNAJC24--OLFM5P^ENST00000411807.2" ; transcript_name "OLFM5P-201" ; transcript_support_level NA ; transcript_type unitary_pseudogene
DNAJC24--OLFM5P HAVANA RNA 22352 27440 . + . FI_gene_label "OLFM5P^ENSG00000224295.3" ; ID "DNAJC24--OLFM5P^ENST00000411807.2" ; Parent "DNAJC24--OLFM5P^OLFM5P^ENSG00000224295.3" ; exon_id "ENSE00001642305.2" ; exon_number 1 ; gene_id "DNAJC24--OLFM5P^OLFM5P^ENSG00000224295.3" ; gene_name OLFM5P ; gene_type unitary_pseudogene ; havana_gene "OTTHUMG00000066889.3" ; havana_transcript "OTTHUMT00000143352.3" ; hgnc_id "HGNC:51927" ; level 2 ; ont "PGO:0000006" ; orig_coord_info "chr11,5524886,5524955,-" ; tag basic ; transcript_id "DNAJC24--OLFM5P^ENST00000411807.2" ; transcript_name "OLFM5P-201" ; transcript_support_level NA ; transcript_type unitary_pseudogene
L1 and L2 created:
FAM3B--AC008740.1 HAVANA gene 16549 18803 . + . FI_gene_label "AC008740.1^ENSG00000257403.2" ; ID "FAM3B--AC008740.1^AC008740.1^ENSG00000257403.2" ; exon_id "ENSE00002375872.1" ; exon_number 1 ; gene_id "FAM3B--AC008740.1^AC008740.1^ENSG00000257403.2" ; gene_name "AC008740.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000170413.2" ; havana_transcript "OTTHUMT00000409028.2" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr16,21347139,21347291,+" ; tag basic ; transcript_id "FAM3B--AC008740.1^ENST00000549658.2" ; transcript_name "AC008740.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
FAM3B--AC008740.1 HAVANA RNA 16549 18803 . + . FI_gene_label "AC008740.1^ENSG00000257403.2" ; ID "FAM3B--AC008740.1^ENST00000549658.2" ; Parent "FAM3B--AC008740.1^AC008740.1^ENSG00000257403.2" ; exon_id "ENSE00002375872.1" ; exon_number 1 ; gene_id "FAM3B--AC008740.1^AC008740.1^ENSG00000257403.2" ; gene_name "AC008740.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000170413.2" ; havana_transcript "OTTHUMT00000409028.2" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr16,21347139,21347291,+" ; tag basic ; transcript_id "FAM3B--AC008740.1^ENST00000549658.2" ; transcript_name "AC008740.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
FAM3B--SNX29P1 HAVANA gene 16549 20555 . + . FI_gene_label "SNX29P1^ENSG00000158482.10" ; ID "FAM3B--SNX29P1^SNX29P1^ENSG00000158482.10" ; exon_id "ENSE00003794601.1" ; exon_number 1 ; gene_id "FAM3B--SNX29P1^SNX29P1^ENSG00000158482.10" ; gene_name SNX29P1 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000170414.2" ; havana_transcript "OTTHUMT00000409029.2" ; hgnc_id "HGNC:31913" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr16,21376648,21376829,+" ; tag basic ; transcript_id "FAM3B--SNX29P1^ENST00000548357.2" ; transcript_name "SNX29P1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
FAM3B--SNX29P1 HAVANA RNA 16549 20555 . + . FI_gene_label "SNX29P1^ENSG00000158482.10" ; ID "FAM3B--SNX29P1^ENST00000548357.2" ; Parent "FAM3B--SNX29P1^SNX29P1^ENSG00000158482.10" ; exon_id "ENSE00003794601.1" ; exon_number 1 ; gene_id "FAM3B--SNX29P1^SNX29P1^ENSG00000158482.10" ; gene_name SNX29P1 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000170414.2" ; havana_transcript "OTTHUMT00000409029.2" ; hgnc_id "HGNC:31913" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr16,21376648,21376829,+" ; tag basic ; transcript_id "FAM3B--SNX29P1^ENST00000548357.2" ; transcript_name "SNX29P1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
FSIP1--AC013652.1 HAVANA RNA 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^ENST00000558209.1" ; Parent "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
LINC01953--IKZF2 HAVANA gene 1001 2717 . + . FI_gene_label "LINC01953^ENSG00000236193.3" ; ID "LINC01953--IKZF2^LINC01953^ENSG00000236193.3" ; exon_id "ENSE00001668924.1" ; exon_number 1 ; gene_id "LINC01953--IKZF2^LINC01953^ENSG00000236193.3" ; gene_name LINC01953 ; gene_type lncRNA ; havana_gene "OTTHUMG00000186255.1" ; havana_transcript "OTTHUMT00000472502.1" ; hgnc_id "HGNC:52776" ; level 2 ; orig_coord_info "chr2,213167393,213167712,-" ; tag basic ; transcript_id "LINC01953--IKZF2^ENST00000426870.1" ; transcript_name "LINC01953-201" ; transcript_support_level 5 ; transcript_type lncRNA
LINC01953--IKZF2 HAVANA RNA 1001 2717 . + . FI_gene_label "LINC01953^ENSG00000236193.3" ; ID "LINC01953--IKZF2^ENST00000426870.1" ; Parent "LINC01953--IKZF2^LINC01953^ENSG00000236193.3" ; exon_id "ENSE00001668924.1" ; exon_number 1 ; gene_id "LINC01953--IKZF2^LINC01953^ENSG00000236193.3" ; gene_name LINC01953 ; gene_type lncRNA ; havana_gene "OTTHUMG00000186255.1" ; havana_transcript "OTTHUMT00000472502.1" ; hgnc_id "HGNC:52776" ; level 2 ; orig_coord_info "chr2,213167393,213167712,-" ; tag basic ; transcript_id "LINC01953--IKZF2^ENST00000426870.1" ; transcript_name "LINC01953-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
LINC02686--SNX29 HAVANA gene 1014 5959 . + . FI_gene_label "LINC02686^ENSG00000254594.5" ; ID "LINC02686--SNX29^LINC02686^ENSG00000254594.5" ; exon_id "ENSE00002163319.1" ; exon_number 1 ; gene_id "LINC02686--SNX29^LINC02686^ENSG00000254594.5" ; gene_name LINC02686 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166108.1" ; havana_transcript "OTTHUMT00000387857.1" ; hgnc_id "HGNC:54186" ; level 2 ; orig_coord_info "chr11,24262081,24262205,-" ; tag basic ; transcript_id "LINC02686--SNX29^ENST00000527283.5" ; transcript_name "LINC02686-201" ; transcript_support_level 4 ; transcript_type lncRNA
LINC02686--SNX29 HAVANA RNA 1014 5959 . + . FI_gene_label "LINC02686^ENSG00000254594.5" ; ID "LINC02686--SNX29^ENST00000527283.5" ; Parent "LINC02686--SNX29^LINC02686^ENSG00000254594.5" ; exon_id "ENSE00002163319.1" ; exon_number 1 ; gene_id "LINC02686--SNX29^LINC02686^ENSG00000254594.5" ; gene_name LINC02686 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166108.1" ; havana_transcript "OTTHUMT00000387857.1" ; hgnc_id "HGNC:54186" ; level 2 ; orig_coord_info "chr11,24262081,24262205,-" ; tag basic ; transcript_id "LINC02686--SNX29^ENST00000527283.5" ; transcript_name "LINC02686-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
MYO1D--AC069061.1 HAVANA gene 41699 42095 . + . FI_gene_label "AC069061.1^ENSG00000263433.1" ; ID "MYO1D--AC069061.1^AC069061.1^ENSG00000263433.1" ; exon_id "ENSE00002694523.1" ; exon_number 1 ; gene_id "MYO1D--AC069061.1^AC069061.1^ENSG00000263433.1" ; gene_name "AC069061.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000179149.1" ; havana_transcript "OTTHUMT00000444997.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr17,26981694,26982090,+" ; tag basic ; transcript_id "MYO1D--AC069061.1^ENST00000580677.1" ; transcript_name "AC069061.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
MYO1D--AC069061.1 HAVANA RNA 41699 42095 . + . FI_gene_label "AC069061.1^ENSG00000263433.1" ; ID "MYO1D--AC069061.1^ENST00000580677.1" ; Parent "MYO1D--AC069061.1^AC069061.1^ENSG00000263433.1" ; exon_id "ENSE00002694523.1" ; exon_number 1 ; gene_id "MYO1D--AC069061.1^AC069061.1^ENSG00000263433.1" ; gene_name "AC069061.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000179149.1" ; havana_transcript "OTTHUMT00000444997.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr17,26981694,26982090,+" ; tag basic ; transcript_id "MYO1D--AC069061.1^ENST00000580677.1" ; transcript_name "AC069061.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
MYO1D--AC131274.3 HAVANA gene 42981 43760 . + . FI_gene_label "AC131274.3^ENSG00000264970.2" ; ID "MYO1D--AC131274.3^AC131274.3^ENSG00000264970.2" ; exon_id "ENSE00002705320.1" ; exon_number 1 ; gene_id "MYO1D--AC131274.3^AC131274.3^ENSG00000264970.2" ; gene_name "AC131274.3" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000179098.3" ; havana_transcript "OTTHUMT00000444747.2" ; level 2 ; orig_coord_info "chr17,22692834,22692905,+" ; transcript_id "MYO1D--AC131274.3^ENST00000577879.1" ; transcript_name "AC131274.3-203" ; transcript_support_level 3 ; transcript_type processed_transcript
MYO1D--AC131274.3 HAVANA RNA 42981 43760 . + . FI_gene_label "AC131274.3^ENSG00000264970.2" ; ID "MYO1D--AC131274.3^ENST00000577879.1" ; Parent "MYO1D--AC131274.3^AC131274.3^ENSG00000264970.2" ; exon_id "ENSE00002705320.1" ; exon_number 1 ; gene_id "MYO1D--AC131274.3^AC131274.3^ENSG00000264970.2" ; gene_name "AC131274.3" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000179098.3" ; havana_transcript "OTTHUMT00000444747.2" ; level 2 ; orig_coord_info "chr17,22692834,22692905,+" ; transcript_id "MYO1D--AC131274.3^ENST00000577879.1" ; transcript_name "AC131274.3-203" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
MYO1D--LINC02799 HAVANA gene 41699 43024 . + . FI_gene_label "LINC02799^ENSG00000235887.2" ; ID "MYO1D--LINC02799^LINC02799^ENSG00000235887.2" ; exon_id "ENSE00001612977.1" ; exon_number 1 ; gene_id "MYO1D--LINC02799^LINC02799^ENSG00000235887.2" ; gene_name LINC02799 ; gene_type lncRNA ; havana_gene "OTTHUMG00000040701.2" ; havana_transcript "OTTHUMT00000097806.2" ; hgnc_id "HGNC:54324" ; level 2 ; orig_coord_info "chr1,143500371,143500512,-" ; tag not_best_in_genome_evidence basic ; transcript_id "MYO1D--LINC02799^ENST00000456469.1" ; transcript_name "LINC02799-201" ; transcript_support_level 5 ; transcript_type lncRNA
MYO1D--LINC02799 HAVANA RNA 41699 43024 . + . FI_gene_label "LINC02799^ENSG00000235887.2" ; ID "MYO1D--LINC02799^ENST00000456469.1" ; Parent "MYO1D--LINC02799^LINC02799^ENSG00000235887.2" ; exon_id "ENSE00001612977.1" ; exon_number 1 ; gene_id "MYO1D--LINC02799^LINC02799^ENSG00000235887.2" ; gene_name LINC02799 ; gene_type lncRNA ; havana_gene "OTTHUMG00000040701.2" ; havana_transcript "OTTHUMT00000097806.2" ; hgnc_id "HGNC:54324" ; level 2 ; orig_coord_info "chr1,143500371,143500512,-" ; tag not_best_in_genome_evidence basic ; transcript_id "MYO1D--LINC02799^ENST00000456469.1" ; transcript_name "LINC02799-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
NAV2-AS3--SPON1 HAVANA gene 1001 2598 . + . FI_gene_label "NAV2-AS3^ENSG00000254542.1" ; ID "NAV2-AS3--SPON1^NAV2-AS3^ENSG00000254542.1" ; exon_id "ENSE00002144681.1" ; exon_number 1 ; gene_id "NAV2-AS3--SPON1^NAV2-AS3^ENSG00000254542.1" ; gene_name "NAV2-AS3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000167396.1" ; havana_transcript "OTTHUMT00000394494.1" ; hgnc_id "HGNC:40742" ; level 1 ; orig_coord_info "chr11,19981237,19981337,-" ; tag basic exp_conf ; transcript_id "NAV2-AS3--SPON1^ENST00000534036.1" ; transcript_name "NAV2-AS3-201" ; transcript_support_level 3 ; transcript_type lncRNA
NAV2-AS3--SPON1 HAVANA RNA 1001 2598 . + . FI_gene_label "NAV2-AS3^ENSG00000254542.1" ; ID "NAV2-AS3--SPON1^ENST00000534036.1" ; Parent "NAV2-AS3--SPON1^NAV2-AS3^ENSG00000254542.1" ; exon_id "ENSE00002144681.1" ; exon_number 1 ; gene_id "NAV2-AS3--SPON1^NAV2-AS3^ENSG00000254542.1" ; gene_name "NAV2-AS3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000167396.1" ; havana_transcript "OTTHUMT00000394494.1" ; hgnc_id "HGNC:40742" ; level 1 ; orig_coord_info "chr11,19981237,19981337,-" ; tag basic exp_conf ; transcript_id "NAV2-AS3--SPON1^ENST00000534036.1" ; transcript_name "NAV2-AS3-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
NBPF4--LENG8-AS1 HAVANA gene 19236 22639 . + . FI_gene_label "LENG8-AS1^ENSG00000226696.6" ; ID "NBPF4--LENG8-AS1^LENG8-AS1^ENSG00000226696.6" ; exon_id "ENSE00001783258.1" ; exon_number 1 ; gene_id "NBPF4--LENG8-AS1^LENG8-AS1^ENSG00000226696.6" ; gene_name "LENG8-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000133686.6" ; havana_transcript "OTTHUMT00000257951.2" ; hgnc_id "HGNC:40705" ; level 2 ; orig_coord_info "chr19,54448165,54448602,-" ; transcript_id "NBPF4--LENG8-AS1^ENST00000416022.1" ; transcript_name "LENG8-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
NBPF4--LENG8-AS1 HAVANA RNA 19236 22639 . + . FI_gene_label "LENG8-AS1^ENSG00000226696.6" ; ID "NBPF4--LENG8-AS1^ENST00000416022.1" ; Parent "NBPF4--LENG8-AS1^LENG8-AS1^ENSG00000226696.6" ; exon_id "ENSE00001783258.1" ; exon_number 1 ; gene_id "NBPF4--LENG8-AS1^LENG8-AS1^ENSG00000226696.6" ; gene_name "LENG8-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000133686.6" ; havana_transcript "OTTHUMT00000257951.2" ; hgnc_id "HGNC:40705" ; level 2 ; orig_coord_info "chr19,54448165,54448602,-" ; transcript_id "NBPF4--LENG8-AS1^ENST00000416022.1" ; transcript_name "LENG8-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
NF1--AC090616.2 HAVANA gene 78060 80490 . + . FI_gene_label "AC090616.2^ENSG00000264164.1" ; ID "NF1--AC090616.2^AC090616.2^ENSG00000264164.1" ; exon_id "ENSE00002694587.1" ; exon_number 1 ; gene_id "NF1--AC090616.2^AC090616.2^ENSG00000264164.1" ; gene_name "AC090616.2" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000179560.1" ; havana_transcript "OTTHUMT00000447090.1" ; level 2 ; orig_coord_info "chr17,32083179,32083322,+" ; tag basic ; transcript_id "NF1--AC090616.2^ENST00000358484.4" ; transcript_name "AC090616.2-201" ; transcript_support_level 3 ; transcript_type processed_transcript
NF1--AC090616.2 HAVANA RNA 78060 80490 . + . FI_gene_label "AC090616.2^ENSG00000264164.1" ; ID "NF1--AC090616.2^ENST00000358484.4" ; Parent "NF1--AC090616.2^AC090616.2^ENSG00000264164.1" ; exon_id "ENSE00002694587.1" ; exon_number 1 ; gene_id "NF1--AC090616.2^AC090616.2^ENSG00000264164.1" ; gene_name "AC090616.2" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000179560.1" ; havana_transcript "OTTHUMT00000447090.1" ; level 2 ; orig_coord_info "chr17,32083179,32083322,+" ; tag basic ; transcript_id "NF1--AC090616.2^ENST00000358484.4" ; transcript_name "AC090616.2-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
POLR2J4--KIAA0895 HAVANA gene 1001 4422 . + . FI_gene_label "POLR2J4^ENSG00000272655.2" ; ID "POLR2J4--KIAA0895^POLR2J4^ENSG00000272655.2" ; exon_id "ENSE00001746198.1" ; exon_number 1 ; gene_id "POLR2J4--KIAA0895^POLR2J4^ENSG00000272655.2" ; gene_name POLR2J4 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000155253.4" ; havana_transcript "OTTHUMT00000339134.1" ; hgnc_id "HGNC:28195" ; level 2 ; orig_coord_info "chr7,44019061,44019170,-" ; tag basic ; transcript_id "POLR2J4--KIAA0895^ENST00000326391.6" ; transcript_name "POLR2J4-203" ; transcript_support_level 1 ; transcript_type processed_transcript
POLR2J4--KIAA0895 HAVANA RNA 1001 4422 . + . FI_gene_label "POLR2J4^ENSG00000272655.2" ; ID "POLR2J4--KIAA0895^ENST00000326391.6" ; Parent "POLR2J4--KIAA0895^POLR2J4^ENSG00000272655.2" ; exon_id "ENSE00001746198.1" ; exon_number 1 ; gene_id "POLR2J4--KIAA0895^POLR2J4^ENSG00000272655.2" ; gene_name POLR2J4 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000155253.4" ; havana_transcript "OTTHUMT00000339134.1" ; hgnc_id "HGNC:28195" ; level 2 ; orig_coord_info "chr7,44019061,44019170,-" ; tag basic ; transcript_id "POLR2J4--KIAA0895^ENST00000326391.6" ; transcript_name "POLR2J4-203" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
REXO5--AC006299.1 HAVANA gene 24585 35881 . + . FI_gene_label "AC006299.1^ENSG00000246225.7" ; ID "REXO5--AC006299.1^AC006299.1^ENSG00000246225.7" ; exon_id "ENSE00001989085.1" ; exon_number 1 ; gene_id "REXO5--AC006299.1^AC006299.1^ENSG00000246225.7" ; gene_name "AC006299.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166073.3" ; havana_transcript "OTTHUMT00000388547.1" ; level 2 ; orig_coord_info "chr11,22829422,22829611,+" ; tag dotter_confirmed basic ; transcript_id "REXO5--AC006299.1^ENST00000499625.1" ; transcript_name "AC006299.1-203" ; transcript_support_level 5 ; transcript_type lncRNA
REXO5--AC006299.1 HAVANA RNA 24585 35881 . + . FI_gene_label "AC006299.1^ENSG00000246225.7" ; ID "REXO5--AC006299.1^ENST00000499625.1" ; Parent "REXO5--AC006299.1^AC006299.1^ENSG00000246225.7" ; exon_id "ENSE00001989085.1" ; exon_number 1 ; gene_id "REXO5--AC006299.1^AC006299.1^ENSG00000246225.7" ; gene_name "AC006299.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166073.3" ; havana_transcript "OTTHUMT00000388547.1" ; level 2 ; orig_coord_info "chr11,22829422,22829611,+" ; tag dotter_confirmed basic ; transcript_id "REXO5--AC006299.1^ENST00000499625.1" ; transcript_name "AC006299.1-203" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
RHOT1--AC104985.2 HAVANA gene 30783 31282 . + . FI_gene_label "AC104985.2^ENSG00000278052.1" ; ID "RHOT1--AC104985.2^AC104985.2^ENSG00000278052.1" ; exon_id "ENSE00003743800.1" ; exon_number 1 ; gene_id "RHOT1--AC104985.2^AC104985.2^ENSG00000278052.1" ; gene_name "AC104985.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000186533.1" ; havana_transcript "OTTHUMT00000473298.1" ; level 2 ; orig_coord_info "chr18,34225930,34226429,+" ; tag basic ; transcript_id "RHOT1--AC104985.2^ENST00000620598.1" ; transcript_name "AC104985.2-201" ; transcript_support_level NA ; transcript_type lncRNA
RHOT1--AC104985.2 HAVANA RNA 30783 31282 . + . FI_gene_label "AC104985.2^ENSG00000278052.1" ; ID "RHOT1--AC104985.2^ENST00000620598.1" ; Parent "RHOT1--AC104985.2^AC104985.2^ENSG00000278052.1" ; exon_id "ENSE00003743800.1" ; exon_number 1 ; gene_id "RHOT1--AC104985.2^AC104985.2^ENSG00000278052.1" ; gene_name "AC104985.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000186533.1" ; havana_transcript "OTTHUMT00000473298.1" ; level 2 ; orig_coord_info "chr18,34225930,34226429,+" ; tag basic ; transcript_id "RHOT1--AC104985.2^ENST00000620598.1" ; transcript_name "AC104985.2-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TRPM2--CU633967.1 ENSEMBL gene 46712 52300 . + . FI_gene_label "CU633967.1^ENSG00000274333.4" ; ID "TRPM2--CU633967.1^CU633967.1^ENSG00000274333.4" ; exon_id "ENSE00003717842.1" ; exon_number 1 ; gene_id "TRPM2--CU633967.1^CU633967.1^ENSG00000274333.4" ; gene_name "CU633967.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189364.2" ; level 3 ; orig_coord_info "chr21,5585778,5585987,+" ; transcript_id "TRPM2--CU633967.1^ENST00000611026.1" ; transcript_name "CU633967.1-213" ; transcript_support_level 2 ; transcript_type lncRNA
TRPM2--CU633967.1 ENSEMBL RNA 46712 52300 . + . FI_gene_label "CU633967.1^ENSG00000274333.4" ; ID "TRPM2--CU633967.1^ENST00000611026.1" ; Parent "TRPM2--CU633967.1^CU633967.1^ENSG00000274333.4" ; exon_id "ENSE00003717842.1" ; exon_number 1 ; gene_id "TRPM2--CU633967.1^CU633967.1^ENSG00000274333.4" ; gene_name "CU633967.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189364.2" ; level 3 ; orig_coord_info "chr21,5585778,5585987,+" ; transcript_id "TRPM2--CU633967.1^ENST00000611026.1" ; transcript_name "CU633967.1-213" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
ZNF174--AL137804.1 HAVANA gene 8891 12466 . + . FI_gene_label "AL137804.1^ENSG00000255525.1" ; ID "ZNF174--AL137804.1^AL137804.1^ENSG00000255525.1" ; exon_id "ENSE00002186970.1" ; exon_number 1 ; gene_id "ZNF174--AL137804.1^AL137804.1^ENSG00000255525.1" ; gene_name "AL137804.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166210.1" ; havana_transcript "OTTHUMT00000388393.1" ; level 2 ; orig_coord_info "chr11,31305685,31305794,+" ; tag basic ; transcript_id "ZNF174--AL137804.1^ENST00000528872.1" ; transcript_name "AL137804.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
ZNF174--AL137804.1 HAVANA RNA 8891 12466 . + . FI_gene_label "AL137804.1^ENSG00000255525.1" ; ID "ZNF174--AL137804.1^ENST00000528872.1" ; Parent "ZNF174--AL137804.1^AL137804.1^ENSG00000255525.1" ; exon_id "ENSE00002186970.1" ; exon_number 1 ; gene_id "ZNF174--AL137804.1^AL137804.1^ENSG00000255525.1" ; gene_name "AL137804.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166210.1" ; havana_transcript "OTTHUMT00000388393.1" ; level 2 ; orig_coord_info "chr11,31305685,31305794,+" ; tag basic ; transcript_id "ZNF174--AL137804.1^ENST00000528872.1" ; transcript_name "AL137804.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
1615 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 1 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
4334 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 114 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed