File Info

Filename
aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/eb5ac62b8ac90d0edd11785b2709c6/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:54:35
                             Started mapping on |	Jun 08 07:57:11
                                    Finished on |	Jun 08 08:44:37
       Mapping speed, Million of reads per hour |	325.51

                          Number of input reads |	257335897
                      Average input read length |	266
                                    UNIQUE READS:
                   Uniquely mapped reads number |	246475057
                        Uniquely mapped reads % |	95.78%
                          Average mapped length |	265.90
                       Number of splices: Total |	287297180
            Number of splices: Annotated (sjdb) |	283589814
                       Number of splices: GT/AG |	284668516
                       Number of splices: GC/AG |	1919632
                       Number of splices: AT/AC |	245617
               Number of splices: Non-canonical |	463415
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.12
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.75
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6743430
             % of reads mapped to multiple loci |	2.62%
        Number of reads mapped to too many loci |	192555
             % of reads mapped to too many loci |	0.07%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	403319
       % of reads unmapped: too many mismatches |	0.16%
            Number of reads unmapped: too short |	2002189
                 % of reads unmapped: too short |	0.78%
                Number of reads unmapped: other |	161943
                     % of reads unmapped: other |	0.06%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2852675
                            % of chimeric reads |	1.11%