Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/8330cd794b8c770fa94d08e9782627/aih-tih-sc-550807-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/836162a3dcea1c4da479423edb64b5/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/836162a3dcea1c4da479423edb64b5/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records paired = 171985531 unpaired = 2744818 MERGED PAIRED END READS = 171985531 MATES PROCESSED = 346715880 TOTAL READS = 174730349 DISTINCT READS = 7.91351e+07 DISTINCT COUNTS = 830 MAX COUNT = 559839 COUNTS OF 1 = 3.99087e+07 MAX TERMS = 100 OBSERVED COUNTS (559840) 1 39908727 2 19081414 3 9311460 4 4650502 5 2411213 6 1316307 7 759449 8 464054 9 297789 10 199877 11 138551 12 101273 13 75524 14 58416 15 46228 16 36966 17 30187 18 25060 19 21279 20 18165 21 15347 22 13479 23 11607 24 10310 25 9160 26 8189 27 7309 28 6572 29 5951 30 5416 31 5018 32 4470 33 4119 34 3689 35 3482 36 3307 37 2969 38 2712 39 2545 40 2443 41 2307 42 1986 43 2005 44 1887 45 1734 46 1637 47 1554 48 1455 49 1363 50 1302 51 1308 52 1208 53 1115 54 1051 55 1003 56 1053 57 916 58 919 59 833 60 812 61 760 62 701 63 707 64 665 65 631 66 647 67 592 68 628 69 537 70 466 71 529 72 527 73 443 74 426 75 423 76 414 77 356 78 412 79 349 80 345 81 355 82 339 83 347 84 329 85 292 86 282 87 266 88 265 89 265 90 257 91 270 92 250 93 230 94 272 95 248 96 205 97 230 98 215 99 218 100 203 101 190 102 190 103 220 104 176 105 172 106 199 107 158 108 149 109 157 110 159 111 142 112 125 113 161 114 121 115 133 116 129 117 136 118 138 119 138 120 127 121 120 122 117 123 123 124 90 125 115 126 96 127 102 128 90 129 96 130 100 131 107 132 95 133 102 134 95 135 87 136 73 137 87 138 76 139 93 140 91 141 82 142 81 143 74 144 74 145 65 146 78 147 73 148 72 149 71 150 71 151 69 152 57 153 54 154 71 155 64 156 53 157 61 158 48 159 67 160 49 161 79 162 53 163 48 164 58 165 70 166 64 167 52 168 51 169 49 170 54 171 48 172 35 173 42 174 50 175 57 176 48 177 33 178 39 179 43 180 42 181 49 182 31 183 34 184 46 185 33 186 35 187 38 188 17 189 30 190 41 191 30 192 39 193 30 194 33 195 41 196 35 197 32 198 27 199 41 200 31 201 30 202 44 203 25 204 30 205 25 206 27 207 31 208 32 209 30 210 27 211 25 212 31 213 25 214 31 215 31 216 14 217 26 218 22 219 29 220 29 221 19 222 22 223 21 224 22 225 19 226 21 227 22 228 13 229 20 230 19 231 22 232 10 233 19 234 14 235 10 236 20 237 12 238 18 239 16 240 20 241 15 242 19 243 15 244 16 245 16 246 15 247 20 248 17 249 19 250 14 251 22 252 11 253 15 254 18 255 18 256 10 257 17 258 17 259 17 260 18 261 13 262 7 263 18 264 9 265 9 266 12 267 13 268 13 269 17 270 16 271 17 272 13 273 13 274 8 275 9 276 6 277 7 278 6 279 5 280 9 281 10 282 6 283 9 284 14 285 3 286 6 287 7 288 7 289 6 290 11 291 12 292 11 293 12 294 5 295 10 296 11 297 14 298 10 299 11 300 9 301 12 302 8 303 7 304 12 305 12 306 9 307 7 308 13 309 10 310 6 311 7 312 3 313 7 314 10 315 7 316 12 317 10 318 8 319 5 320 7 321 7 322 8 323 10 324 11 325 6 326 5 327 12 328 6 329 5 330 3 331 6 332 9 333 11 334 5 335 5 336 5 337 12 338 7 339 7 340 7 341 9 342 8 343 5 344 4 345 5 346 5 347 4 348 5 349 5 350 7 351 6 352 6 353 7 354 8 355 7 356 7 357 7 358 5 359 4 360 5 361 8 362 3 363 6 364 5 365 1 366 4 367 8 368 9 369 4 370 5 371 6 372 3 373 6 374 8 375 9 376 4 377 7 378 3 379 3 380 1 381 8 382 6 383 9 384 4 385 7 386 6 387 6 388 5 389 5 390 6 391 4 392 2 393 5 394 5 395 5 396 5 397 2 398 5 399 6 400 5 402 9 403 5 404 7 405 8 406 4 407 4 408 7 409 4 410 3 411 7 412 8 413 3 414 4 415 3 416 1 417 5 419 6 420 2 421 2 422 3 423 4 424 5 425 5 426 5 427 4 429 1 430 6 431 1 432 8 433 3 434 6 435 3 437 3 438 3 440 3 441 5 442 4 443 5 444 3 445 3 446 5 447 5 448 2 449 3 450 2 451 3 452 3 454 3 455 2 456 3 457 1 458 3 459 2 460 3 461 5 462 3 463 3 464 4 465 1 466 2 467 3 468 1 469 4 470 1 471 3 472 1 473 3 474 2 475 2 476 2 477 2 478 2 479 3 480 2 481 2 482 4 483 5 484 2 485 3 486 1 487 4 488 1 489 1 490 1 491 2 493 2 494 4 495 2 496 2 497 3 498 2 499 1 500 2 501 2 502 2 503 3 504 1 505 2 506 1 507 1 508 2 509 2 510 2 511 1 512 1 513 1 514 1 516 1 517 1 518 3 519 1 521 1 522 2 523 1 524 2 525 1 526 3 527 3 528 3 529 3 530 2 531 1 532 5 533 2 534 1 535 3 537 2 540 1 541 3 542 3 543 1 544 2 545 1 546 3 547 3 548 2 549 2 550 5 551 5 552 3 553 1 555 2 557 1 558 2 559 4 560 1 561 2 562 3 563 3 564 1 568 3 570 2 571 2 573 3 575 2 576 2 578 2 579 3 580 2 581 2 582 1 583 1 585 1 586 2 587 2 589 2 591 3 592 1 593 1 594 2 595 1 598 1 599 2 600 2 601 1 602 3 604 1 605 2 607 1 609 2 610 1 612 1 613 3 616 2 617 2 619 2 621 2 623 3 624 2 626 1 628 1 629 2 630 3 631 2 632 1 633 1 634 1 636 3 637 2 639 1 641 3 642 2 643 1 644 1 645 1 652 1 654 1 656 1 657 1 659 2 661 1 663 2 665 1 666 1 667 2 668 2 670 2 671 1 672 1 674 1 676 3 677 3 678 1 679 1 680 1 682 2 683 1 685 1 686 2 687 2 688 1 689 1 693 1 695 1 696 1 697 1 698 1 700 1 701 1 704 2 715 1 718 3 719 1 720 1 721 2 723 2 726 1 730 1 731 1 736 1 739 1 740 1 741 2 742 1 744 1 746 2 747 1 748 1 749 1 750 4 751 1 753 1 754 2 760 1 761 1 765 1 766 1 768 1 772 1 774 1 775 3 778 1 779 2 781 1 783 2 784 1 790 1 791 1 796 2 801 2 803 2 804 1 806 1 807 1 809 1 810 2 812 1 813 1 814 1 815 2 816 3 820 1 822 1 823 1 824 2 825 1 826 1 831 1 832 1 833 1 834 1 838 1 839 1 840 1 843 1 844 2 845 1 846 2 847 1 849 2 851 1 854 1 861 1 862 1 864 1 866 1 869 1 870 1 876 1 882 1 887 2 889 1 893 1 897 1 905 1 908 1 910 1 911 1 914 1 915 1 920 2 922 1 925 2 932 2 939 1 944 1 951 1 953 2 957 1 960 1 964 1 970 1 974 2 975 1 978 1 985 2 993 2 1002 1 1018 1 1024 1 1060 1 1070 1 1072 2 1085 1 1091 1 1125 2 1126 1 1127 1 1134 1 1136 1 1146 1 1167 1 1174 1 1179 1 1184 1 1191 1 1194 2 1207 1 1219 2 1233 1 1235 1 1239 1 1241 1 1243 1 1247 1 1255 1 1261 1 1270 1 1274 1 1290 1 1303 1 1305 1 1324 1 1325 1 1328 1 1331 1 1332 1 1348 1 1397 1 1401 1 1403 1 1453 1 1455 1 1498 1 1500 1 1503 1 1512 1 1514 1 1566 1 1571 1 1592 1 1594 1 1640 1 1667 1 1678 1 1873 1 1875 1 1902 1 1912 1 2098 1 2132 1 2224 1 2255 1 2276 1 2283 1 2327 1 2421 1 2642 1 2767 1 2861 1 3048 1 3098 1 3293 1 3548 1 4020 1 4569 1 5664 1 6998 1 22455 1 559839 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ........................................................................ ............................ [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]