Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/5ce590c038f6373464df8606daebf7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/5ce590c038f6373464df8606daebf7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/a0dd166dc22baa7aebfe2baeec7e84/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/4667bbc94c0e0c7ae9bb64638010cc/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 342893107
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	342893107
Known Splicing Events:	339854531
Partial Novel Splicing Events:	1780212
Novel Splicing Events:	1154881
Filtered Splicing Events:	103483

Total splicing  Junctions:	580385
Known Splicing Junctions:	282755
Partial Novel Splicing Junctions:	167337
Novel Splicing Junctions:	130293

===================================================================
Create BED file ...
Create Interact file ...