Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/bccc3bf87be0df9ef3c4741118fabf/fi_workdir/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/f491ebbfdc6a6957e634debaa3f158/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/f491ebbfdc6a6957e634debaa3f158/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 9012
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 9012
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:9012
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
ACCS--USP35 HAVANA gene 1346 15447 . + . FI_gene_label "ACCS^ENSG00000110455.14" ; ID "ACCS--USP35^ACCS^ENSG00000110455.14" ; ccdsid "CCDS7907.1" ; exon_id "ENSE00003622939.1" ; exon_number 2 ; gene_id "ACCS--USP35^ACCS^ENSG00000110455.14" ; gene_name ACCS ; gene_type protein_coding ; havana_gene "OTTHUMG00000166427.5" ; havana_transcript "OTTHUMT00000389721.2" ; hgnc_id "HGNC:23989" ; level 2 ; orig_coord_info "chr11,44067628,44067915,+" ; protein_id "ENSP00000263776.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACCS--USP35^ENST00000263776.9" ; transcript_name "ACCS-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACCS--USP35 HAVANA mRNA 1346 15447 . + . FI_gene_label "ACCS^ENSG00000110455.14" ; ID "ACCS--USP35^ENST00000263776.9" ; Parent "ACCS--USP35^ACCS^ENSG00000110455.14" ; ccdsid "CCDS7907.1" ; exon_id "ENSE00003622939.1" ; exon_number 2 ; gene_id "ACCS--USP35^ACCS^ENSG00000110455.14" ; gene_name ACCS ; gene_type protein_coding ; havana_gene "OTTHUMG00000166427.5" ; havana_transcript "OTTHUMT00000389721.2" ; hgnc_id "HGNC:23989" ; level 2 ; orig_coord_info "chr11,44067628,44067915,+" ; protein_id "ENSP00000263776.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACCS--USP35^ENST00000263776.9" ; transcript_name "ACCS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACCS--USP35 HAVANA gene 22511 31884 . + . FI_gene_label "USP35^ENSG00000118369.13" ; ID "ACCS--USP35^USP35^ENSG00000118369.13" ; exon_id "ENSE00002143312.1" ; exon_number 1 ; gene_id "ACCS--USP35^USP35^ENSG00000118369.13" ; gene_name USP35 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166492.3" ; havana_transcript "OTTHUMT00000390029.1" ; hgnc_id "HGNC:20061" ; level 2 ; orig_coord_info "chr11,78199596,78199724,+" ; protein_id "ENSP00000434942.1" ; tag basic ; transcript_id "ACCS--USP35^ENST00000526425.1" ; transcript_name "USP35-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACCS--USP35 HAVANA mRNA 22511 31884 . + . FI_gene_label "USP35^ENSG00000118369.13" ; ID "ACCS--USP35^ENST00000526425.1" ; Parent "ACCS--USP35^USP35^ENSG00000118369.13" ; exon_id "ENSE00002143312.1" ; exon_number 1 ; gene_id "ACCS--USP35^USP35^ENSG00000118369.13" ; gene_name USP35 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166492.3" ; havana_transcript "OTTHUMT00000390029.1" ; hgnc_id "HGNC:20061" ; level 2 ; orig_coord_info "chr11,78199596,78199724,+" ; protein_id "ENSP00000434942.1" ; tag basic ; transcript_id "ACCS--USP35^ENST00000526425.1" ; transcript_name "USP35-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANO1--TENM4 HAVANA gene 36902 95597 . + . FI_gene_label "TENM4^ENSG00000149256.16" ; ID "ANO1--TENM4^TENM4^ENSG00000149256.16" ; ccdsid "CCDS44688.1" ; exon_id "ENSE00003465214.1" ; exon_number 5 ; gene_id "ANO1--TENM4^TENM4^ENSG00000149256.16" ; gene_name TENM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166770.7" ; havana_transcript "OTTHUMT00000391406.3" ; hgnc_id "HGNC:29945" ; level 2 ; orig_coord_info "chr11,79069722,79069944,-" ; protein_id "ENSP00000278550.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANO1--TENM4^ENST00000278550.12" ; transcript_name "TENM4-201" ; transcript_support_level 5 ; transcript_type protein_coding
ANO1--TENM4 HAVANA mRNA 36902 95597 . + . FI_gene_label "TENM4^ENSG00000149256.16" ; ID "ANO1--TENM4^ENST00000278550.12" ; Parent "ANO1--TENM4^TENM4^ENSG00000149256.16" ; ccdsid "CCDS44688.1" ; exon_id "ENSE00003465214.1" ; exon_number 5 ; gene_id "ANO1--TENM4^TENM4^ENSG00000149256.16" ; gene_name TENM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166770.7" ; havana_transcript "OTTHUMT00000391406.3" ; hgnc_id "HGNC:29945" ; level 2 ; orig_coord_info "chr11,79069722,79069944,-" ; protein_id "ENSP00000278550.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANO1--TENM4^ENST00000278550.12" ; transcript_name "TENM4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ANO1--TENM4 HAVANA gene 2414 23336 . + . FI_gene_label "ANO1^ENSG00000131620.17" ; ID "ANO1--TENM4^ANO1^ENSG00000131620.17" ; exon_id "ENSE00001314057.4" ; exon_number 1 ; gene_id "ANO1--TENM4^ANO1^ENSG00000131620.17" ; gene_name ANO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167204.2" ; havana_transcript "OTTHUMT00000393687.1" ; hgnc_id "HGNC:21625" ; level 2 ; orig_coord_info "chr11,70085519,70085542,+" ; protein_id "ENSP00000319477.5" ; tag basic ; transcript_id "ANO1--TENM4^ENST00000316296.9" ; transcript_name "ANO1-201" ; transcript_support_level 2 ; transcript_type protein_coding
ANO1--TENM4 HAVANA mRNA 2414 23336 . + . FI_gene_label "ANO1^ENSG00000131620.17" ; ID "ANO1--TENM4^ENST00000316296.9" ; Parent "ANO1--TENM4^ANO1^ENSG00000131620.17" ; exon_id "ENSE00001314057.4" ; exon_number 1 ; gene_id "ANO1--TENM4^ANO1^ENSG00000131620.17" ; gene_name ANO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167204.2" ; havana_transcript "OTTHUMT00000393687.1" ; hgnc_id "HGNC:21625" ; level 2 ; orig_coord_info "chr11,70085519,70085542,+" ; protein_id "ENSP00000319477.5" ; tag basic ; transcript_id "ANO1--TENM4^ENST00000316296.9" ; transcript_name "ANO1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
BAGE2--BCAS3 HAVANA gene 23472 78563 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BAGE2--BCAS3^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BAGE2--BCAS3^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BAGE2--BCAS3^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAGE2--BCAS3 HAVANA mRNA 23472 78563 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BAGE2--BCAS3^ENST00000390652.9" ; Parent "BAGE2--BCAS3^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BAGE2--BCAS3^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BAGE2--BCAS3^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--B3GALT5 ENSEMBL gene 66170 70422 . + . FI_gene_label "B3GALT5^ENSG00000183778.17" ; ID "BCAS3--B3GALT5^B3GALT5^ENSG00000183778.17" ; ccdsid "CCDS13667.1" ; exon_id "ENSE00003754588.1" ; exon_number 3 ; gene_id "BCAS3--B3GALT5^B3GALT5^ENSG00000183778.17" ; gene_name B3GALT5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086725.3" ; hgnc_id "HGNC:920" ; level 3 ; orig_coord_info "chr21,39660560,39661489,+" ; protein_id "ENSP00000343318.4" ; tag basic appris_principal_4 CCDS ; transcript_id "BCAS3--B3GALT5^ENST00000343118.5" ; transcript_name "B3GALT5-201" ; transcript_support_level 5 ; transcript_type protein_coding
BCAS3--B3GALT5 ENSEMBL mRNA 66170 70422 . + . FI_gene_label "B3GALT5^ENSG00000183778.17" ; ID "BCAS3--B3GALT5^ENST00000343118.5" ; Parent "BCAS3--B3GALT5^B3GALT5^ENSG00000183778.17" ; ccdsid "CCDS13667.1" ; exon_id "ENSE00003754588.1" ; exon_number 3 ; gene_id "BCAS3--B3GALT5^B3GALT5^ENSG00000183778.17" ; gene_name B3GALT5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086725.3" ; hgnc_id "HGNC:920" ; level 3 ; orig_coord_info "chr21,39660560,39661489,+" ; protein_id "ENSP00000343318.4" ; tag basic appris_principal_4 CCDS ; transcript_id "BCAS3--B3GALT5^ENST00000343118.5" ; transcript_name "B3GALT5-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--B3GALT5 HAVANA gene 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--B3GALT5^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--B3GALT5^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--B3GALT5^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS3--B3GALT5 HAVANA mRNA 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--B3GALT5^ENST00000390652.9" ; Parent "BCAS3--B3GALT5^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--B3GALT5^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--B3GALT5^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BRWD1--PPM1E HAVANA gene 58567 70682 . + . FI_gene_label "PPM1E^ENSG00000175175.6" ; ID "BRWD1--PPM1E^PPM1E^ENSG00000175175.6" ; ccdsid "CCDS11613.1" ; exon_id "ENSE00001255303.3" ; exon_number 1 ; gene_id "BRWD1--PPM1E^PPM1E^ENSG00000175175.6" ; gene_name PPM1E ; gene_type protein_coding ; havana_gene "OTTHUMG00000179248.3" ; havana_transcript "OTTHUMT00000445458.3" ; hgnc_id "HGNC:19322" ; level 2 ; orig_coord_info "chr17,58755998,58756461,+" ; protein_id "ENSP00000312411.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BRWD1--PPM1E^ENST00000308249.4" ; transcript_name "PPM1E-201" ; transcript_support_level 1 ; transcript_type protein_coding
BRWD1--PPM1E HAVANA mRNA 58567 70682 . + . FI_gene_label "PPM1E^ENSG00000175175.6" ; ID "BRWD1--PPM1E^ENST00000308249.4" ; Parent "BRWD1--PPM1E^PPM1E^ENSG00000175175.6" ; ccdsid "CCDS11613.1" ; exon_id "ENSE00001255303.3" ; exon_number 1 ; gene_id "BRWD1--PPM1E^PPM1E^ENSG00000175175.6" ; gene_name PPM1E ; gene_type protein_coding ; havana_gene "OTTHUMG00000179248.3" ; havana_transcript "OTTHUMT00000445458.3" ; hgnc_id "HGNC:19322" ; level 2 ; orig_coord_info "chr17,58755998,58756461,+" ; protein_id "ENSP00000312411.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BRWD1--PPM1E^ENST00000308249.4" ; transcript_name "PPM1E-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BRWD1--PPM1E HAVANA gene 2535 55566 . + . FI_gene_label "BRWD1^ENSG00000185658.14" ; ID "BRWD1--PPM1E^BRWD1^ENSG00000185658.14" ; ccdsid "CCDS13662.1" ; exon_id "ENSE00001880434.1" ; exon_number 1 ; gene_id "BRWD1--PPM1E^BRWD1^ENSG00000185658.14" ; gene_name BRWD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000066030.8" ; havana_transcript "OTTHUMT00000141398.3" ; hgnc_id "HGNC:12760" ; level 2 ; orig_coord_info "chr21,39313443,39313491,-" ; protein_id "ENSP00000330753.2" ; tag basic appris_principal_4 CCDS ; transcript_id "BRWD1--PPM1E^ENST00000333229.6" ; transcript_name "BRWD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
BRWD1--PPM1E HAVANA mRNA 2535 55566 . + . FI_gene_label "BRWD1^ENSG00000185658.14" ; ID "BRWD1--PPM1E^ENST00000333229.6" ; Parent "BRWD1--PPM1E^BRWD1^ENSG00000185658.14" ; ccdsid "CCDS13662.1" ; exon_id "ENSE00001880434.1" ; exon_number 1 ; gene_id "BRWD1--PPM1E^BRWD1^ENSG00000185658.14" ; gene_name BRWD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000066030.8" ; havana_transcript "OTTHUMT00000141398.3" ; hgnc_id "HGNC:12760" ; level 2 ; orig_coord_info "chr21,39313443,39313491,-" ; protein_id "ENSP00000330753.2" ; tag basic appris_principal_4 CCDS ; transcript_id "BRWD1--PPM1E^ENST00000333229.6" ; transcript_name "BRWD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DYRK1A--TMIGD1 HAVANA gene 50906 57633 . + . FI_gene_label "TMIGD1^ENSG00000182271.13" ; ID "DYRK1A--TMIGD1^TMIGD1^ENSG00000182271.13" ; ccdsid "CCDS32605.1" ; exon_id "ENSE00001710969.1" ; exon_number 2 ; gene_id "DYRK1A--TMIGD1^TMIGD1^ENSG00000182271.13" ; gene_name TMIGD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179757.2" ; havana_transcript "OTTHUMT00000447955.2" ; hgnc_id "HGNC:32431" ; level 2 ; orig_coord_info "chr17,30332052,30332133,-" ; protein_id "ENSP00000332404.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "DYRK1A--TMIGD1^ENST00000328886.5" ; transcript_name "TMIGD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
DYRK1A--TMIGD1 HAVANA mRNA 50906 57633 . + . FI_gene_label "TMIGD1^ENSG00000182271.13" ; ID "DYRK1A--TMIGD1^ENST00000328886.5" ; Parent "DYRK1A--TMIGD1^TMIGD1^ENSG00000182271.13" ; ccdsid "CCDS32605.1" ; exon_id "ENSE00001710969.1" ; exon_number 2 ; gene_id "DYRK1A--TMIGD1^TMIGD1^ENSG00000182271.13" ; gene_name TMIGD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179757.2" ; havana_transcript "OTTHUMT00000447955.2" ; hgnc_id "HGNC:32431" ; level 2 ; orig_coord_info "chr17,30332052,30332133,-" ; protein_id "ENSP00000332404.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "DYRK1A--TMIGD1^ENST00000328886.5" ; transcript_name "TMIGD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DYRK1A--TMIGD1 HAVANA gene 2985 36922 . + . FI_gene_label "DYRK1A^ENSG00000157540.22" ; ID "DYRK1A--TMIGD1^DYRK1A^ENSG00000157540.22" ; ccdsid "CCDS42926.1" ; exon_id "ENSE00003829613.1" ; exon_number 3 ; gene_id "DYRK1A--TMIGD1^DYRK1A^ENSG00000157540.22" ; gene_name DYRK1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000086657.9" ; havana_transcript "OTTHUMT00000194799.2" ; hgnc_id "HGNC:3091" ; level 2 ; orig_coord_info "chr21,37420375,37420384,+" ; protein_id "ENSP00000342690.3" ; tag basic CCDS ; transcript_id "DYRK1A--TMIGD1^ENST00000338785.8" ; transcript_name "DYRK1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
DYRK1A--TMIGD1 HAVANA mRNA 2985 36922 . + . FI_gene_label "DYRK1A^ENSG00000157540.22" ; ID "DYRK1A--TMIGD1^ENST00000338785.8" ; Parent "DYRK1A--TMIGD1^DYRK1A^ENSG00000157540.22" ; ccdsid "CCDS42926.1" ; exon_id "ENSE00003829613.1" ; exon_number 3 ; gene_id "DYRK1A--TMIGD1^DYRK1A^ENSG00000157540.22" ; gene_name DYRK1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000086657.9" ; havana_transcript "OTTHUMT00000194799.2" ; hgnc_id "HGNC:3091" ; level 2 ; orig_coord_info "chr21,37420375,37420384,+" ; protein_id "ENSP00000342690.3" ; tag basic CCDS ; transcript_id "DYRK1A--TMIGD1^ENST00000338785.8" ; transcript_name "DYRK1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FCHSD2--SHANK2 HAVANA gene 1273 25563 . + . FI_gene_label "FCHSD2^ENSG00000137478.15" ; ID "FCHSD2--SHANK2^FCHSD2^ENSG00000137478.15" ; exon_id "ENSE00003654343.1" ; exon_number 3 ; gene_id "FCHSD2--SHANK2^FCHSD2^ENSG00000137478.15" ; gene_name FCHSD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153082.7" ; havana_transcript "OTTHUMT00000329378.4" ; hgnc_id "HGNC:29114" ; level 2 ; orig_coord_info "chr11,73015809,73015882,-" ; protein_id "ENSP00000308978.7" ; tag basic ; transcript_id "FCHSD2--SHANK2^ENST00000311172.11" ; transcript_name "FCHSD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
FCHSD2--SHANK2 HAVANA mRNA 1273 25563 . + . FI_gene_label "FCHSD2^ENSG00000137478.15" ; ID "FCHSD2--SHANK2^ENST00000311172.11" ; Parent "FCHSD2--SHANK2^FCHSD2^ENSG00000137478.15" ; exon_id "ENSE00003654343.1" ; exon_number 3 ; gene_id "FCHSD2--SHANK2^FCHSD2^ENSG00000137478.15" ; gene_name FCHSD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153082.7" ; havana_transcript "OTTHUMT00000329378.4" ; hgnc_id "HGNC:29114" ; level 2 ; orig_coord_info "chr11,73015809,73015882,-" ; protein_id "ENSP00000308978.7" ; tag basic ; transcript_id "FCHSD2--SHANK2^ENST00000311172.11" ; transcript_name "FCHSD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FCHSD2--SHANK2 HAVANA gene 61501 84926 . + . FI_gene_label "SHANK2^ENSG00000162105.20" ; ID "FCHSD2--SHANK2^SHANK2^ENSG00000162105.20" ; ccdsid "CCDS76448.1" ; exon_id "ENSE00001714763.2" ; exon_number 1 ; gene_id "FCHSD2--SHANK2^SHANK2^ENSG00000162105.20" ; gene_name SHANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154615.9" ; havana_transcript "OTTHUMT00000477858.2" ; hgnc_id "HGNC:14295" ; level 2 ; orig_coord_info "chr11,70661596,70661767,-" ; protein_id "ENSP00000345193.6" ; tag basic CCDS ; transcript_id "FCHSD2--SHANK2^ENST00000338508.8" ; transcript_name "SHANK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
FCHSD2--SHANK2 HAVANA mRNA 61501 84926 . + . FI_gene_label "SHANK2^ENSG00000162105.20" ; ID "FCHSD2--SHANK2^ENST00000338508.8" ; Parent "FCHSD2--SHANK2^SHANK2^ENSG00000162105.20" ; ccdsid "CCDS76448.1" ; exon_id "ENSE00001714763.2" ; exon_number 1 ; gene_id "FCHSD2--SHANK2^SHANK2^ENSG00000162105.20" ; gene_name SHANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154615.9" ; havana_transcript "OTTHUMT00000477858.2" ; hgnc_id "HGNC:14295" ; level 2 ; orig_coord_info "chr11,70661596,70661767,-" ; protein_id "ENSP00000345193.6" ; tag basic CCDS ; transcript_id "FCHSD2--SHANK2^ENST00000338508.8" ; transcript_name "SHANK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GAB2--NAV2 HAVANA gene 3792 20413 . + . FI_gene_label "GAB2^ENSG00000033327.13" ; ID "GAB2--NAV2^GAB2^ENSG00000033327.13" ; ccdsid "CCDS8260.1" ; exon_id "ENSE00003464974.1" ; exon_number 2 ; gene_id "GAB2--NAV2^GAB2^ENSG00000033327.13" ; gene_name GAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166673.3" ; havana_transcript "OTTHUMT00000391084.1" ; hgnc_id "HGNC:14458" ; level 2 ; orig_coord_info "chr11,78280601,78280862,-" ; protein_id "ENSP00000343959.2" ; tag basic CCDS ; transcript_id "GAB2--NAV2^ENST00000340149.6" ; transcript_name "GAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GAB2--NAV2 HAVANA mRNA 3792 20413 . + . FI_gene_label "GAB2^ENSG00000033327.13" ; ID "GAB2--NAV2^ENST00000340149.6" ; Parent "GAB2--NAV2^GAB2^ENSG00000033327.13" ; ccdsid "CCDS8260.1" ; exon_id "ENSE00003464974.1" ; exon_number 2 ; gene_id "GAB2--NAV2^GAB2^ENSG00000033327.13" ; gene_name GAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166673.3" ; havana_transcript "OTTHUMT00000391084.1" ; hgnc_id "HGNC:14458" ; level 2 ; orig_coord_info "chr11,78280601,78280862,-" ; protein_id "ENSP00000343959.2" ; tag basic CCDS ; transcript_id "GAB2--NAV2^ENST00000340149.6" ; transcript_name "GAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GAB2--NAV2 HAVANA gene 24722 79954 . + . FI_gene_label "NAV2^ENSG00000166833.22" ; ID "GAB2--NAV2^NAV2^ENSG00000166833.22" ; ccdsid "CCDS7850.1" ; exon_id "ENSE00003846126.1" ; exon_number 1 ; gene_id "GAB2--NAV2^NAV2^ENSG00000166833.22" ; gene_name NAV2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151837.7" ; havana_transcript "OTTHUMT00000324114.1" ; hgnc_id "HGNC:15997" ; level 2 ; orig_coord_info "chr11,19713696,19713962,+" ; protein_id "ENSP00000309577.6" ; tag basic MANE_Select CCDS ; transcript_id "GAB2--NAV2^ENST00000349880.9" ; transcript_name "NAV2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GAB2--NAV2 HAVANA mRNA 24722 79954 . + . FI_gene_label "NAV2^ENSG00000166833.22" ; ID "GAB2--NAV2^ENST00000349880.9" ; Parent "GAB2--NAV2^NAV2^ENSG00000166833.22" ; ccdsid "CCDS7850.1" ; exon_id "ENSE00003846126.1" ; exon_number 1 ; gene_id "GAB2--NAV2^NAV2^ENSG00000166833.22" ; gene_name NAV2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151837.7" ; havana_transcript "OTTHUMT00000324114.1" ; hgnc_id "HGNC:15997" ; level 2 ; orig_coord_info "chr11,19713696,19713962,+" ; protein_id "ENSP00000309577.6" ; tag basic MANE_Select CCDS ; transcript_id "GAB2--NAV2^ENST00000349880.9" ; transcript_name "NAV2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GSTP1--ZP1 HAVANA gene 6916 13693 . + . FI_gene_label "ZP1^ENSG00000149506.11" ; ID "GSTP1--ZP1^ZP1^ENSG00000149506.11" ; ccdsid "CCDS31572.1" ; exon_id "ENSE00001304028.4" ; exon_number 1 ; gene_id "GSTP1--ZP1^ZP1^ENSG00000149506.11" ; gene_name ZP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167797.2" ; havana_transcript "OTTHUMT00000396329.2" ; hgnc_id "HGNC:13187" ; level 2 ; orig_coord_info "chr11,60867562,60867757,+" ; protein_id "ENSP00000278853.5" ; tag not_organism_supported basic appris_principal_1 CCDS ; transcript_id "GSTP1--ZP1^ENST00000278853.9" ; transcript_name "ZP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GSTP1--ZP1 HAVANA mRNA 6916 13693 . + . FI_gene_label "ZP1^ENSG00000149506.11" ; ID "GSTP1--ZP1^ENST00000278853.9" ; Parent "GSTP1--ZP1^ZP1^ENSG00000149506.11" ; ccdsid "CCDS31572.1" ; exon_id "ENSE00001304028.4" ; exon_number 1 ; gene_id "GSTP1--ZP1^ZP1^ENSG00000149506.11" ; gene_name ZP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167797.2" ; havana_transcript "OTTHUMT00000396329.2" ; hgnc_id "HGNC:13187" ; level 2 ; orig_coord_info "chr11,60867562,60867757,+" ; protein_id "ENSP00000278853.5" ; tag not_organism_supported basic appris_principal_1 CCDS ; transcript_id "GSTP1--ZP1^ENST00000278853.9" ; transcript_name "ZP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GSTP1--ZP1 HAVANA gene 1001 3915 . + . FI_gene_label "GSTP1^ENSG00000084207.18" ; ID "GSTP1--ZP1^GSTP1^ENSG00000084207.18" ; exon_id "ENSE00001533848.1" ; exon_number 1 ; gene_id "GSTP1--ZP1^GSTP1^ENSG00000084207.18" ; gene_name GSTP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137430.5" ; havana_transcript "OTTHUMT00000268507.2" ; hgnc_id "HGNC:4638" ; level 2 ; orig_coord_info "chr11,67583844,67583844,+" ; protein_id "ENSP00000381604.1" ; tag basic ; transcript_id "GSTP1--ZP1^ENST00000398603.6" ; transcript_name "GSTP1-201" ; transcript_support_level 3 ; transcript_type protein_coding
GSTP1--ZP1 HAVANA mRNA 1001 3915 . + . FI_gene_label "GSTP1^ENSG00000084207.18" ; ID "GSTP1--ZP1^ENST00000398603.6" ; Parent "GSTP1--ZP1^GSTP1^ENSG00000084207.18" ; exon_id "ENSE00001533848.1" ; exon_number 1 ; gene_id "GSTP1--ZP1^GSTP1^ENSG00000084207.18" ; gene_name GSTP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137430.5" ; havana_transcript "OTTHUMT00000268507.2" ; hgnc_id "HGNC:4638" ; level 2 ; orig_coord_info "chr11,67583844,67583844,+" ; protein_id "ENSP00000381604.1" ; tag basic ; transcript_id "GSTP1--ZP1^ENST00000398603.6" ; transcript_name "GSTP1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
H2AC18--H3C13 HAVANA gene 4550 5018 . + . FI_gene_label "H3C13^ENSG00000183598.4" ; ID "H2AC18--H3C13^H3C13^ENSG00000183598.4" ; ccdsid "CCDS41388.1" ; exon_id "ENSE00001618286.2" ; exon_number 1 ; gene_id "H2AC18--H3C13^H3C13^ENSG00000183598.4" ; gene_name H3C13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012092.2" ; havana_transcript "OTTHUMT00000033452.2" ; hgnc_id "HGNC:25311" ; level 2 ; orig_coord_info "chr1,149813274,149813681,-" ; protein_id "ENSP00000333277.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "H2AC18--H3C13^ENST00000331491.2" ; transcript_name "H3C13-201" ; transcript_support_level NA ; transcript_type protein_coding
H2AC18--H3C13 HAVANA mRNA 4550 5018 . + . FI_gene_label "H3C13^ENSG00000183598.4" ; ID "H2AC18--H3C13^ENST00000331491.2" ; Parent "H2AC18--H3C13^H3C13^ENSG00000183598.4" ; ccdsid "CCDS41388.1" ; exon_id "ENSE00001618286.2" ; exon_number 1 ; gene_id "H2AC18--H3C13^H3C13^ENSG00000183598.4" ; gene_name H3C13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012092.2" ; havana_transcript "OTTHUMT00000033452.2" ; hgnc_id "HGNC:25311" ; level 2 ; orig_coord_info "chr1,149813274,149813681,-" ; protein_id "ENSP00000333277.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "H2AC18--H3C13^ENST00000331491.2" ; transcript_name "H3C13-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
H2AC18--H3C13 HAVANA gene 1001 1549 . + . FI_gene_label "H2AC18^ENSG00000203812.2" ; ID "H2AC18--H3C13^H2AC18^ENSG00000203812.2" ; ccdsid "CCDS934.1" ; exon_id "ENSE00001448930.2" ; exon_number 1 ; gene_id "H2AC18--H3C13^H2AC18^ENSG00000203812.2" ; gene_name H2AC18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188678.1" ; havana_transcript "OTTHUMT00000477885.1" ; hgnc_id "HGNC:4736" ; level 2 ; orig_coord_info "chr1,149842309,149842698,-" ; protein_id "ENSP00000358155.2" ; tag basic appris_principal_1 CCDS ; transcript_id "H2AC18--H3C13^ENST00000369159.2" ; transcript_name "H2AC18-201" ; transcript_support_level NA ; transcript_type protein_coding
H2AC18--H3C13 HAVANA mRNA 1001 1549 . + . FI_gene_label "H2AC18^ENSG00000203812.2" ; ID "H2AC18--H3C13^ENST00000369159.2" ; Parent "H2AC18--H3C13^H2AC18^ENSG00000203812.2" ; ccdsid "CCDS934.1" ; exon_id "ENSE00001448930.2" ; exon_number 1 ; gene_id "H2AC18--H3C13^H2AC18^ENSG00000203812.2" ; gene_name H2AC18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188678.1" ; havana_transcript "OTTHUMT00000477885.1" ; hgnc_id "HGNC:4736" ; level 2 ; orig_coord_info "chr1,149842309,149842698,-" ; protein_id "ENSP00000358155.2" ; tag basic appris_principal_1 CCDS ; transcript_id "H2AC18--H3C13^ENST00000369159.2" ; transcript_name "H2AC18-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
HOXB7--AC008443.2 HAVANA gene 2060 4653 . + . FI_gene_label "HOXB7^ENSG00000260027.5" ; ID "HOXB7--AC008443.2^HOXB7^ENSG00000260027.5" ; ccdsid "CCDS11532.1" ; exon_id "ENSE00000812640.6" ; exon_number 1 ; gene_id "HOXB7--AC008443.2^HOXB7^ENSG00000260027.5" ; gene_name HOXB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170231.5" ; havana_transcript "OTTHUMT00000358097.5" ; hgnc_id "HGNC:5118" ; level 2 ; orig_coord_info "chr17,48610519,48610918,-" ; protein_id "ENSP00000239165.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HOXB7--AC008443.2^ENST00000239165.9" ; transcript_name "HOXB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
HOXB7--AC008443.2 HAVANA mRNA 2060 4653 . + . FI_gene_label "HOXB7^ENSG00000260027.5" ; ID "HOXB7--AC008443.2^ENST00000239165.9" ; Parent "HOXB7--AC008443.2^HOXB7^ENSG00000260027.5" ; ccdsid "CCDS11532.1" ; exon_id "ENSE00000812640.6" ; exon_number 1 ; gene_id "HOXB7--AC008443.2^HOXB7^ENSG00000260027.5" ; gene_name HOXB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170231.5" ; havana_transcript "OTTHUMT00000358097.5" ; hgnc_id "HGNC:5118" ; level 2 ; orig_coord_info "chr17,48610519,48610918,-" ; protein_id "ENSP00000239165.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HOXB7--AC008443.2^ENST00000239165.9" ; transcript_name "HOXB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HOXB7--BAGE2 HAVANA gene 2060 4653 . + . FI_gene_label "HOXB7^ENSG00000260027.5" ; ID "HOXB7--BAGE2^HOXB7^ENSG00000260027.5" ; ccdsid "CCDS11532.1" ; exon_id "ENSE00000812640.6" ; exon_number 1 ; gene_id "HOXB7--BAGE2^HOXB7^ENSG00000260027.5" ; gene_name HOXB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170231.5" ; havana_transcript "OTTHUMT00000358097.5" ; hgnc_id "HGNC:5118" ; level 2 ; orig_coord_info "chr17,48610519,48610918,-" ; protein_id "ENSP00000239165.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HOXB7--BAGE2^ENST00000239165.9" ; transcript_name "HOXB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
HOXB7--BAGE2 HAVANA mRNA 2060 4653 . + . FI_gene_label "HOXB7^ENSG00000260027.5" ; ID "HOXB7--BAGE2^ENST00000239165.9" ; Parent "HOXB7--BAGE2^HOXB7^ENSG00000260027.5" ; ccdsid "CCDS11532.1" ; exon_id "ENSE00000812640.6" ; exon_number 1 ; gene_id "HOXB7--BAGE2^HOXB7^ENSG00000260027.5" ; gene_name HOXB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170231.5" ; havana_transcript "OTTHUMT00000358097.5" ; hgnc_id "HGNC:5118" ; level 2 ; orig_coord_info "chr17,48610519,48610918,-" ; protein_id "ENSP00000239165.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HOXB7--BAGE2^ENST00000239165.9" ; transcript_name "HOXB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HSD17B12--ALKBH3 HAVANA gene 1059 21660 . + . FI_gene_label "HSD17B12^ENSG00000149084.13" ; ID "HSD17B12--ALKBH3^HSD17B12^ENSG00000149084.13" ; ccdsid "CCDS7905.1" ; exon_id "ENSE00003798791.2" ; exon_number 1 ; gene_id "HSD17B12--ALKBH3^HSD17B12^ENSG00000149084.13" ; gene_name HSD17B12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166403.5" ; havana_transcript "OTTHUMT00000389594.3" ; hgnc_id "HGNC:18646" ; level 2 ; orig_coord_info "chr11,43680828,43680987,+" ; protein_id "ENSP00000278353.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HSD17B12--ALKBH3^ENST00000278353.10" ; transcript_name "HSD17B12-201" ; transcript_support_level 1 ; transcript_type protein_coding
HSD17B12--ALKBH3 HAVANA mRNA 1059 21660 . + . FI_gene_label "HSD17B12^ENSG00000149084.13" ; ID "HSD17B12--ALKBH3^ENST00000278353.10" ; Parent "HSD17B12--ALKBH3^HSD17B12^ENSG00000149084.13" ; ccdsid "CCDS7905.1" ; exon_id "ENSE00003798791.2" ; exon_number 1 ; gene_id "HSD17B12--ALKBH3^HSD17B12^ENSG00000149084.13" ; gene_name HSD17B12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166403.5" ; havana_transcript "OTTHUMT00000389594.3" ; hgnc_id "HGNC:18646" ; level 2 ; orig_coord_info "chr11,43680828,43680987,+" ; protein_id "ENSP00000278353.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HSD17B12--ALKBH3^ENST00000278353.10" ; transcript_name "HSD17B12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HSD17B12--ALKBH3 HAVANA gene 24683 36167 . + . FI_gene_label "ALKBH3^ENSG00000166199.13" ; ID "HSD17B12--ALKBH3^ALKBH3^ENSG00000166199.13" ; ccdsid "CCDS7906.1" ; exon_id "ENSE00001248417.3" ; exon_number 2 ; gene_id "HSD17B12--ALKBH3^ALKBH3^ENSG00000166199.13" ; gene_name ALKBH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166417.4" ; havana_transcript "OTTHUMT00000389693.2" ; hgnc_id "HGNC:30141" ; level 2 ; orig_coord_info "chr11,43882653,43882731,+" ; protein_id "ENSP00000302232.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HSD17B12--ALKBH3^ENST00000302708.9" ; transcript_name "ALKBH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
HSD17B12--ALKBH3 HAVANA mRNA 24683 36167 . + . FI_gene_label "ALKBH3^ENSG00000166199.13" ; ID "HSD17B12--ALKBH3^ENST00000302708.9" ; Parent "HSD17B12--ALKBH3^ALKBH3^ENSG00000166199.13" ; ccdsid "CCDS7906.1" ; exon_id "ENSE00001248417.3" ; exon_number 2 ; gene_id "HSD17B12--ALKBH3^ALKBH3^ENSG00000166199.13" ; gene_name ALKBH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166417.4" ; havana_transcript "OTTHUMT00000389693.2" ; hgnc_id "HGNC:30141" ; level 2 ; orig_coord_info "chr11,43882653,43882731,+" ; protein_id "ENSP00000302232.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HSD17B12--ALKBH3^ENST00000302708.9" ; transcript_name "ALKBH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LDLRAD3--MS4A6E HAVANA gene 17576 22457 . + . FI_gene_label "MS4A6E^ENSG00000166926.8" ; ID "LDLRAD3--MS4A6E^MS4A6E^ENSG00000166926.8" ; ccdsid "CCDS7984.1" ; exon_id "ENSE00001107844.4" ; exon_number 1 ; gene_id "LDLRAD3--MS4A6E^MS4A6E^ENSG00000166926.8" ; gene_name MS4A6E ; gene_type protein_coding ; havana_gene "OTTHUMG00000167355.1" ; havana_transcript "OTTHUMT00000394296.1" ; hgnc_id "HGNC:14285" ; level 2 ; orig_coord_info "chr11,60334896,60335042,+" ; protein_id "ENSP00000300182.4" ; tag basic appris_principal_1 CCDS ; transcript_id "LDLRAD3--MS4A6E^ENST00000300182.8" ; transcript_name "MS4A6E-201" ; transcript_support_level 1 ; transcript_type protein_coding
LDLRAD3--MS4A6E HAVANA mRNA 17576 22457 . + . FI_gene_label "MS4A6E^ENSG00000166926.8" ; ID "LDLRAD3--MS4A6E^ENST00000300182.8" ; Parent "LDLRAD3--MS4A6E^MS4A6E^ENSG00000166926.8" ; ccdsid "CCDS7984.1" ; exon_id "ENSE00001107844.4" ; exon_number 1 ; gene_id "LDLRAD3--MS4A6E^MS4A6E^ENSG00000166926.8" ; gene_name MS4A6E ; gene_type protein_coding ; havana_gene "OTTHUMG00000167355.1" ; havana_transcript "OTTHUMT00000394296.1" ; hgnc_id "HGNC:14285" ; level 2 ; orig_coord_info "chr11,60334896,60335042,+" ; protein_id "ENSP00000300182.4" ; tag basic appris_principal_1 CCDS ; transcript_id "LDLRAD3--MS4A6E^ENST00000300182.8" ; transcript_name "MS4A6E-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LDLRAD3--MS4A6E HAVANA gene 1082 14575 . + . FI_gene_label "LDLRAD3^ENSG00000179241.13" ; ID "LDLRAD3--MS4A6E^LDLRAD3^ENSG00000179241.13" ; ccdsid "CCDS31462.1" ; exon_id "ENSE00001371974.3" ; exon_number 1 ; gene_id "LDLRAD3--MS4A6E^LDLRAD3^ENSG00000179241.13" ; gene_name LDLRAD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166313.2" ; havana_transcript "OTTHUMT00000389085.2" ; hgnc_id "HGNC:27046" ; level 2 ; orig_coord_info "chr11,35944099,35944144,+" ; protein_id "ENSP00000318607.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LDLRAD3--MS4A6E^ENST00000315571.6" ; transcript_name "LDLRAD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
LDLRAD3--MS4A6E HAVANA mRNA 1082 14575 . + . FI_gene_label "LDLRAD3^ENSG00000179241.13" ; ID "LDLRAD3--MS4A6E^ENST00000315571.6" ; Parent "LDLRAD3--MS4A6E^LDLRAD3^ENSG00000179241.13" ; ccdsid "CCDS31462.1" ; exon_id "ENSE00001371974.3" ; exon_number 1 ; gene_id "LDLRAD3--MS4A6E^LDLRAD3^ENSG00000179241.13" ; gene_name LDLRAD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166313.2" ; havana_transcript "OTTHUMT00000389085.2" ; hgnc_id "HGNC:27046" ; level 2 ; orig_coord_info "chr11,35944099,35944144,+" ; protein_id "ENSP00000318607.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LDLRAD3--MS4A6E^ENST00000315571.6" ; transcript_name "LDLRAD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--AP002495.1 HAVANA gene 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--AP002495.1^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--AP002495.1^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--AP002495.1^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--AP002495.1 HAVANA mRNA 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--AP002495.1^ENST00000294304.12" ; Parent "LRP5--AP002495.1^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--AP002495.1^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--AP002495.1^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--AP002495.1 HAVANA gene 33905 38363 . + . FI_gene_label "AP002495.1^ENSG00000254469.8" ; ID "LRP5--AP002495.1^AP002495.1^ENSG00000254469.8" ; exon_id "ENSE00002175076.1" ; exon_number 3 ; gene_id "LRP5--AP002495.1^AP002495.1^ENSG00000254469.8" ; gene_name "AP002495.1" ; gene_type protein_coding ; havana_gene "OTTHUMG00000167535.5" ; havana_transcript "OTTHUMT00000394957.2" ; level 1 ; orig_coord_info "chr11,71923309,71923353,-" ; protein_id "ENSP00000435720.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF exp_conf ; transcript_id "LRP5--AP002495.1^ENST00000528184.1" ; transcript_name "AP002495.1-210" ; transcript_support_level 4 ; transcript_type protein_coding
LRP5--AP002495.1 HAVANA mRNA 33905 38363 . + . FI_gene_label "AP002495.1^ENSG00000254469.8" ; ID "LRP5--AP002495.1^ENST00000528184.1" ; Parent "LRP5--AP002495.1^AP002495.1^ENSG00000254469.8" ; exon_id "ENSE00002175076.1" ; exon_number 3 ; gene_id "LRP5--AP002495.1^AP002495.1^ENSG00000254469.8" ; gene_name "AP002495.1" ; gene_type protein_coding ; havana_gene "OTTHUMG00000167535.5" ; havana_transcript "OTTHUMT00000394957.2" ; level 1 ; orig_coord_info "chr11,71923309,71923353,-" ; protein_id "ENSP00000435720.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF exp_conf ; transcript_id "LRP5--AP002495.1^ENST00000528184.1" ; transcript_name "AP002495.1-210" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
LRP5--DEFB131B HAVANA gene 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--DEFB131B^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--DEFB131B^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--DEFB131B^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--DEFB131B HAVANA mRNA 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--DEFB131B^ENST00000294304.12" ; Parent "LRP5--DEFB131B^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--DEFB131B^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--DEFB131B^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--DEFB131B HAVANA gene 33834 35046 . + . FI_gene_label "DEFB131B^ENSG00000225805.4" ; ID "LRP5--DEFB131B^DEFB131B^ENSG00000225805.4" ; ccdsid "CCDS76450.1" ; exon_id "ENSE00002163743.1" ; exon_number 1 ; gene_id "LRP5--DEFB131B^DEFB131B^ENSG00000225805.4" ; gene_name DEFB131B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167536.3" ; havana_transcript "OTTHUMT00000394959.3" ; hgnc_id "HGNC:38058" ; level 2 ; orig_coord_info "chr11,71878453,71878510,+" ; protein_id "ENSP00000485141.1" ; tag not_best_in_genome_evidence basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--DEFB131B^ENST00000530210.1" ; transcript_name "DEFB131B-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--DEFB131B HAVANA mRNA 33834 35046 . + . FI_gene_label "DEFB131B^ENSG00000225805.4" ; ID "LRP5--DEFB131B^ENST00000530210.1" ; Parent "LRP5--DEFB131B^DEFB131B^ENSG00000225805.4" ; ccdsid "CCDS76450.1" ; exon_id "ENSE00002163743.1" ; exon_number 1 ; gene_id "LRP5--DEFB131B^DEFB131B^ENSG00000225805.4" ; gene_name DEFB131B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167536.3" ; havana_transcript "OTTHUMT00000394959.3" ; hgnc_id "HGNC:38058" ; level 2 ; orig_coord_info "chr11,71878453,71878510,+" ; protein_id "ENSP00000485141.1" ; tag not_best_in_genome_evidence basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--DEFB131B^ENST00000530210.1" ; transcript_name "DEFB131B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--ZNF705E HAVANA gene 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--ZNF705E^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--ZNF705E^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--ZNF705E^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--ZNF705E HAVANA mRNA 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--ZNF705E^ENST00000294304.12" ; Parent "LRP5--ZNF705E^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--ZNF705E^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--ZNF705E^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--ZNF705E HAVANA gene 33834 40588 . + . FI_gene_label "ZNF705E^ENSG00000214534.5" ; ID "LRP5--ZNF705E^ZNF705E^ENSG00000214534.5" ; ccdsid "CCDS86225.1" ; exon_id "ENSE00002260677.1" ; exon_number 1 ; gene_id "LRP5--ZNF705E^ZNF705E^ENSG00000214534.5" ; gene_name ZNF705E ; gene_type protein_coding ; havana_gene "OTTHUMG00000167482.2" ; havana_transcript "OTTHUMT00000394768.2" ; hgnc_id "HGNC:33203" ; level 2 ; orig_coord_info "chr11,71821465,71821476,-" ; protein_id "ENSP00000492790.1" ; tag not_best_in_genome_evidence dotter_confirmed basic appris_principal_1 CCDS ; transcript_id "LRP5--ZNF705E^ENST00000525199.1" ; transcript_name "ZNF705E-201" ; transcript_support_level 2 ; transcript_type protein_coding
LRP5--ZNF705E HAVANA mRNA 33834 40588 . + . FI_gene_label "ZNF705E^ENSG00000214534.5" ; ID "LRP5--ZNF705E^ENST00000525199.1" ; Parent "LRP5--ZNF705E^ZNF705E^ENSG00000214534.5" ; ccdsid "CCDS86225.1" ; exon_id "ENSE00002260677.1" ; exon_number 1 ; gene_id "LRP5--ZNF705E^ZNF705E^ENSG00000214534.5" ; gene_name ZNF705E ; gene_type protein_coding ; havana_gene "OTTHUMG00000167482.2" ; havana_transcript "OTTHUMT00000394768.2" ; hgnc_id "HGNC:33203" ; level 2 ; orig_coord_info "chr11,71821465,71821476,-" ; protein_id "ENSP00000492790.1" ; tag not_best_in_genome_evidence dotter_confirmed basic appris_principal_1 CCDS ; transcript_id "LRP5--ZNF705E^ENST00000525199.1" ; transcript_name "ZNF705E-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
LRP5--ZNF705G HAVANA gene 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--ZNF705G^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--ZNF705G^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--ZNF705G^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--ZNF705G HAVANA mRNA 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--ZNF705G^ENST00000294304.12" ; Parent "LRP5--ZNF705G^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--ZNF705G^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--ZNF705G^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--ZNF705G HAVANA gene 33834 42789 . + . FI_gene_label "ZNF705G^ENSG00000215372.6" ; ID "LRP5--ZNF705G^ZNF705G^ENSG00000215372.6" ; ccdsid "CCDS47773.1" ; exon_id "ENSE00001793543.1" ; exon_number 3 ; gene_id "LRP5--ZNF705G^ZNF705G^ENSG00000215372.6" ; gene_name ZNF705G ; gene_type protein_coding ; havana_gene "OTTHUMG00000165384.1" ; havana_transcript "OTTHUMT00000383776.1" ; hgnc_id "HGNC:37134" ; level 2 ; orig_coord_info "chr8,7362935,7362946,-" ; protein_id "ENSP00000383020.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--ZNF705G^ENST00000400156.4" ; transcript_name "ZNF705G-201" ; transcript_support_level 2 ; transcript_type protein_coding
LRP5--ZNF705G HAVANA mRNA 33834 42789 . + . FI_gene_label "ZNF705G^ENSG00000215372.6" ; ID "LRP5--ZNF705G^ENST00000400156.4" ; Parent "LRP5--ZNF705G^ZNF705G^ENSG00000215372.6" ; ccdsid "CCDS47773.1" ; exon_id "ENSE00001793543.1" ; exon_number 3 ; gene_id "LRP5--ZNF705G^ZNF705G^ENSG00000215372.6" ; gene_name ZNF705G ; gene_type protein_coding ; havana_gene "OTTHUMG00000165384.1" ; havana_transcript "OTTHUMT00000383776.1" ; hgnc_id "HGNC:37134" ; level 2 ; orig_coord_info "chr8,7362935,7362946,-" ; protein_id "ENSP00000383020.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--ZNF705G^ENST00000400156.4" ; transcript_name "ZNF705G-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
LRRC4C--EHF HAVANA gene 17357 33249 . + . FI_gene_label "EHF^ENSG00000135373.13" ; ID "LRRC4C--EHF^EHF^ENSG00000135373.13" ; ccdsid "CCDS7894.1" ; exon_id "ENSE00003651425.1" ; exon_number 2 ; gene_id "LRRC4C--EHF^EHF^ENSG00000135373.13" ; gene_name EHF ; gene_type protein_coding ; havana_gene "OTTHUMG00000166454.2" ; havana_transcript "OTTHUMT00000389852.1" ; hgnc_id "HGNC:3246" ; level 2 ; orig_coord_info "chr11,34642631,34642727,+" ; protein_id "ENSP00000257831.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRRC4C--EHF^ENST00000257831.8" ; transcript_name "EHF-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRRC4C--EHF HAVANA mRNA 17357 33249 . + . FI_gene_label "EHF^ENSG00000135373.13" ; ID "LRRC4C--EHF^ENST00000257831.8" ; Parent "LRRC4C--EHF^EHF^ENSG00000135373.13" ; ccdsid "CCDS7894.1" ; exon_id "ENSE00003651425.1" ; exon_number 2 ; gene_id "LRRC4C--EHF^EHF^ENSG00000135373.13" ; gene_name EHF ; gene_type protein_coding ; havana_gene "OTTHUMG00000166454.2" ; havana_transcript "OTTHUMT00000389852.1" ; hgnc_id "HGNC:3246" ; level 2 ; orig_coord_info "chr11,34642631,34642727,+" ; protein_id "ENSP00000257831.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRRC4C--EHF^ENST00000257831.8" ; transcript_name "EHF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRRC4C--EHF HAVANA gene 6885 14356 . + . FI_gene_label "LRRC4C^ENSG00000148948.8" ; ID "LRRC4C--EHF^LRRC4C^ENSG00000148948.8" ; ccdsid "CCDS31464.1" ; exon_id "ENSE00000988252.2" ; exon_number 2 ; gene_id "LRRC4C--EHF^LRRC4C^ENSG00000148948.8" ; gene_name LRRC4C ; gene_type protein_coding ; havana_gene "OTTHUMG00000166383.5" ; havana_transcript "OTTHUMT00000389499.1" ; hgnc_id "HGNC:29317" ; level 2 ; orig_coord_info "chr11,40114373,40116292,-" ; protein_id "ENSP00000278198.1" ; tag basic appris_principal_1 CCDS ; transcript_id "LRRC4C--EHF^ENST00000278198.2" ; transcript_name "LRRC4C-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRRC4C--EHF HAVANA mRNA 6885 14356 . + . FI_gene_label "LRRC4C^ENSG00000148948.8" ; ID "LRRC4C--EHF^ENST00000278198.2" ; Parent "LRRC4C--EHF^LRRC4C^ENSG00000148948.8" ; ccdsid "CCDS31464.1" ; exon_id "ENSE00000988252.2" ; exon_number 2 ; gene_id "LRRC4C--EHF^LRRC4C^ENSG00000148948.8" ; gene_name LRRC4C ; gene_type protein_coding ; havana_gene "OTTHUMG00000166383.5" ; havana_transcript "OTTHUMT00000389499.1" ; hgnc_id "HGNC:29317" ; level 2 ; orig_coord_info "chr11,40114373,40116292,-" ; protein_id "ENSP00000278198.1" ; tag basic appris_principal_1 CCDS ; transcript_id "LRRC4C--EHF^ENST00000278198.2" ; transcript_name "LRRC4C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MALAT1--SF3B2 HAVANA gene 14465 31284 . + . FI_gene_label "SF3B2^ENSG00000087365.16" ; ID "MALAT1--SF3B2^SF3B2^ENSG00000087365.16" ; ccdsid "CCDS31612.1" ; exon_id "ENSE00001292154.8" ; exon_number 1 ; gene_id "MALAT1--SF3B2^SF3B2^ENSG00000087365.16" ; gene_name SF3B2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166751.5" ; havana_transcript "OTTHUMT00000391352.3" ; hgnc_id "HGNC:10769" ; level 2 ; orig_coord_info "chr11,66052385,66052517,+" ; protein_id "ENSP00000318861.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MALAT1--SF3B2^ENST00000322535.11" ; transcript_name "SF3B2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MALAT1--SF3B2 HAVANA mRNA 14465 31284 . + . FI_gene_label "SF3B2^ENSG00000087365.16" ; ID "MALAT1--SF3B2^ENST00000322535.11" ; Parent "MALAT1--SF3B2^SF3B2^ENSG00000087365.16" ; ccdsid "CCDS31612.1" ; exon_id "ENSE00001292154.8" ; exon_number 1 ; gene_id "MALAT1--SF3B2^SF3B2^ENSG00000087365.16" ; gene_name SF3B2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166751.5" ; havana_transcript "OTTHUMT00000391352.3" ; hgnc_id "HGNC:10769" ; level 2 ; orig_coord_info "chr11,66052385,66052517,+" ; protein_id "ENSP00000318861.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MALAT1--SF3B2^ENST00000322535.11" ; transcript_name "SF3B2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MSI2--HSF5 HAVANA gene 1673 54046 . + . FI_gene_label "MSI2^ENSG00000153944.12" ; ID "MSI2--HSF5^MSI2^ENSG00000153944.12" ; ccdsid "CCDS11596.1" ; exon_id "ENSE00002219180.3" ; exon_number 1 ; gene_id "MSI2--HSF5^MSI2^ENSG00000153944.12" ; gene_name MSI2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178398.4" ; havana_transcript "OTTHUMT00000441813.2" ; hgnc_id "HGNC:18585" ; level 2 ; orig_coord_info "chr17,57256743,57256804,+" ; protein_id "ENSP00000284073.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MSI2--HSF5^ENST00000284073.7" ; transcript_name "MSI2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MSI2--HSF5 HAVANA mRNA 1673 54046 . + . FI_gene_label "MSI2^ENSG00000153944.12" ; ID "MSI2--HSF5^ENST00000284073.7" ; Parent "MSI2--HSF5^MSI2^ENSG00000153944.12" ; ccdsid "CCDS11596.1" ; exon_id "ENSE00002219180.3" ; exon_number 1 ; gene_id "MSI2--HSF5^MSI2^ENSG00000153944.12" ; gene_name MSI2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178398.4" ; havana_transcript "OTTHUMT00000441813.2" ; hgnc_id "HGNC:18585" ; level 2 ; orig_coord_info "chr17,57256743,57256804,+" ; protein_id "ENSP00000284073.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MSI2--HSF5^ENST00000284073.7" ; transcript_name "MSI2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MSI2--HSF5 HAVANA gene 57047 66164 . + . FI_gene_label "HSF5^ENSG00000176160.11" ; ID "MSI2--HSF5^HSF5^ENSG00000176160.11" ; ccdsid "CCDS32690.1" ; exon_id "ENSE00001293235.4" ; exon_number 1 ; gene_id "MSI2--HSF5^HSF5^ENSG00000176160.11" ; gene_name HSF5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179078.3" ; havana_transcript "OTTHUMT00000444719.3" ; hgnc_id "HGNC:26862" ; level 2 ; orig_coord_info "chr17,58487725,58488274,-" ; protein_id "ENSP00000313243.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MSI2--HSF5^ENST00000323777.8" ; transcript_name "HSF5-201" ; transcript_support_level 1 ; transcript_type protein_coding
MSI2--HSF5 HAVANA mRNA 57047 66164 . + . FI_gene_label "HSF5^ENSG00000176160.11" ; ID "MSI2--HSF5^ENST00000323777.8" ; Parent "MSI2--HSF5^HSF5^ENSG00000176160.11" ; ccdsid "CCDS32690.1" ; exon_id "ENSE00001293235.4" ; exon_number 1 ; gene_id "MSI2--HSF5^HSF5^ENSG00000176160.11" ; gene_name HSF5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179078.3" ; havana_transcript "OTTHUMT00000444719.3" ; hgnc_id "HGNC:26862" ; level 2 ; orig_coord_info "chr17,58487725,58488274,-" ; protein_id "ENSP00000313243.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MSI2--HSF5^ENST00000323777.8" ; transcript_name "HSF5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PACSIN2--AL021707.1 HAVANA gene 1001 21816 . + . FI_gene_label "PACSIN2^ENSG00000100266.19" ; ID "PACSIN2--AL021707.1^PACSIN2^ENSG00000100266.19" ; ccdsid "CCDS43023.1" ; exon_id "ENSE00003785686.1" ; exon_number 2 ; gene_id "PACSIN2--AL021707.1^PACSIN2^ENSG00000100266.19" ; gene_name PACSIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150701.8" ; havana_transcript "OTTHUMT00000319665.2" ; hgnc_id "HGNC:8571" ; level 2 ; orig_coord_info "chr22,42912021,42912080,-" ; protein_id "ENSP00000263246.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PACSIN2--AL021707.1^ENST00000263246.8" ; transcript_name "PACSIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PACSIN2--AL021707.1 HAVANA mRNA 1001 21816 . + . FI_gene_label "PACSIN2^ENSG00000100266.19" ; ID "PACSIN2--AL021707.1^ENST00000263246.8" ; Parent "PACSIN2--AL021707.1^PACSIN2^ENSG00000100266.19" ; ccdsid "CCDS43023.1" ; exon_id "ENSE00003785686.1" ; exon_number 2 ; gene_id "PACSIN2--AL021707.1^PACSIN2^ENSG00000100266.19" ; gene_name PACSIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150701.8" ; havana_transcript "OTTHUMT00000319665.2" ; hgnc_id "HGNC:8571" ; level 2 ; orig_coord_info "chr22,42912021,42912080,-" ; protein_id "ENSP00000263246.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PACSIN2--AL021707.1^ENST00000263246.8" ; transcript_name "PACSIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
POLD3--AP001992.1 HAVANA gene 1027 19037 . + . FI_gene_label "POLD3^ENSG00000077514.9" ; ID "POLD3--AP001992.1^POLD3^ENSG00000077514.9" ; ccdsid "CCDS8233.1" ; exon_id "ENSE00002198152.2" ; exon_number 1 ; gene_id "POLD3--AP001992.1^POLD3^ENSG00000077514.9" ; gene_name POLD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165621.4" ; havana_transcript "OTTHUMT00000385376.2" ; hgnc_id "HGNC:20932" ; level 2 ; orig_coord_info "chr11,74592659,74592718,+" ; protein_id "ENSP00000263681.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "POLD3--AP001992.1^ENST00000263681.7" ; transcript_name "POLD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
POLD3--AP001992.1 HAVANA mRNA 1027 19037 . + . FI_gene_label "POLD3^ENSG00000077514.9" ; ID "POLD3--AP001992.1^ENST00000263681.7" ; Parent "POLD3--AP001992.1^POLD3^ENSG00000077514.9" ; ccdsid "CCDS8233.1" ; exon_id "ENSE00002198152.2" ; exon_number 1 ; gene_id "POLD3--AP001992.1^POLD3^ENSG00000077514.9" ; gene_name POLD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165621.4" ; havana_transcript "OTTHUMT00000385376.2" ; hgnc_id "HGNC:20932" ; level 2 ; orig_coord_info "chr11,74592659,74592718,+" ; protein_id "ENSP00000263681.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "POLD3--AP001992.1^ENST00000263681.7" ; transcript_name "POLD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RAB6A--LTBP3 HAVANA gene 18004 34350 . + . FI_gene_label "LTBP3^ENSG00000168056.17" ; ID "RAB6A--LTBP3^LTBP3^ENSG00000168056.17" ; ccdsid "CCDS44647.1" ; exon_id "ENSE00001603933.3" ; exon_number 1 ; gene_id "RAB6A--LTBP3^LTBP3^ENSG00000168056.17" ; gene_name LTBP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166575.7" ; havana_transcript "OTTHUMT00000390538.2" ; hgnc_id "HGNC:6716" ; level 2 ; orig_coord_info "chr11,65557629,65557959,-" ; protein_id "ENSP00000301873.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAB6A--LTBP3^ENST00000301873.11" ; transcript_name "LTBP3-201" ; transcript_support_level 2 ; transcript_type protein_coding
RAB6A--LTBP3 HAVANA mRNA 18004 34350 . + . FI_gene_label "LTBP3^ENSG00000168056.17" ; ID "RAB6A--LTBP3^ENST00000301873.11" ; Parent "RAB6A--LTBP3^LTBP3^ENSG00000168056.17" ; ccdsid "CCDS44647.1" ; exon_id "ENSE00001603933.3" ; exon_number 1 ; gene_id "RAB6A--LTBP3^LTBP3^ENSG00000168056.17" ; gene_name LTBP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166575.7" ; havana_transcript "OTTHUMT00000390538.2" ; hgnc_id "HGNC:6716" ; level 2 ; orig_coord_info "chr11,65557629,65557959,-" ; protein_id "ENSP00000301873.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAB6A--LTBP3^ENST00000301873.11" ; transcript_name "LTBP3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RAB6A--LTBP3 HAVANA gene 1001 14432 . + . FI_gene_label "RAB6A^ENSG00000175582.20" ; ID "RAB6A--LTBP3^RAB6A^ENSG00000175582.20" ; ccdsid "CCDS8223.1" ; exon_id "ENSE00002289073.1" ; exon_number 1 ; gene_id "RAB6A--LTBP3^RAB6A^ENSG00000175582.20" ; gene_name RAB6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000134308.6" ; havana_transcript "OTTHUMT00000259240.3" ; hgnc_id "HGNC:9786" ; level 2 ; orig_coord_info "chr11,73760566,73760635,-" ; protein_id "ENSP00000311449.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "RAB6A--LTBP3^ENST00000310653.10" ; transcript_name "RAB6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAB6A--LTBP3 HAVANA mRNA 1001 14432 . + . FI_gene_label "RAB6A^ENSG00000175582.20" ; ID "RAB6A--LTBP3^ENST00000310653.10" ; Parent "RAB6A--LTBP3^RAB6A^ENSG00000175582.20" ; ccdsid "CCDS8223.1" ; exon_id "ENSE00002289073.1" ; exon_number 1 ; gene_id "RAB6A--LTBP3^RAB6A^ENSG00000175582.20" ; gene_name RAB6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000134308.6" ; havana_transcript "OTTHUMT00000259240.3" ; hgnc_id "HGNC:9786" ; level 2 ; orig_coord_info "chr11,73760566,73760635,-" ; protein_id "ENSP00000311449.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "RAB6A--LTBP3^ENST00000310653.10" ; transcript_name "RAB6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RUNX1--CBY1 HAVANA gene 44686 51452 . + . FI_gene_label "CBY1^ENSG00000100211.10" ; ID "RUNX1--CBY1^CBY1^ENSG00000100211.10" ; ccdsid "CCDS13974.1" ; exon_id "ENSE00003468095.1" ; exon_number 2 ; gene_id "RUNX1--CBY1^CBY1^ENSG00000100211.10" ; gene_name CBY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150990.20" ; havana_transcript "OTTHUMT00000320832.1" ; hgnc_id "HGNC:1307" ; level 2 ; orig_coord_info "chr22,38668055,38668132,+" ; protein_id "ENSP00000216029.3" ; tag basic appris_principal_1 CCDS ; transcript_id "RUNX1--CBY1^ENST00000216029.7" ; transcript_name "CBY1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RUNX1--CBY1 HAVANA mRNA 44686 51452 . + . FI_gene_label "CBY1^ENSG00000100211.10" ; ID "RUNX1--CBY1^ENST00000216029.7" ; Parent "RUNX1--CBY1^CBY1^ENSG00000100211.10" ; ccdsid "CCDS13974.1" ; exon_id "ENSE00003468095.1" ; exon_number 2 ; gene_id "RUNX1--CBY1^CBY1^ENSG00000100211.10" ; gene_name CBY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150990.20" ; havana_transcript "OTTHUMT00000320832.1" ; hgnc_id "HGNC:1307" ; level 2 ; orig_coord_info "chr22,38668055,38668132,+" ; protein_id "ENSP00000216029.3" ; tag basic appris_principal_1 CCDS ; transcript_id "RUNX1--CBY1^ENST00000216029.7" ; transcript_name "CBY1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RUNX1--CBY1 HAVANA gene 20606 41666 . + . FI_gene_label "RUNX1^ENSG00000159216.19" ; ID "RUNX1--CBY1^RUNX1^ENSG00000159216.19" ; ccdsid "CCDS13639.1" ; exon_id "ENSE00001317351.1" ; exon_number 1 ; gene_id "RUNX1--CBY1^RUNX1^ENSG00000159216.19" ; gene_name RUNX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086299.10" ; havana_transcript "OTTHUMT00000194231.1" ; hgnc_id "HGNC:10471" ; level 2 ; orig_coord_info "chr21,35048842,35048899,-" ; protein_id "ENSP00000300305.3" ; tag basic appris_principal_4 CCDS ; transcript_id "RUNX1--CBY1^ENST00000300305.7" ; transcript_name "RUNX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RUNX1--CBY1 HAVANA mRNA 20606 41666 . + . FI_gene_label "RUNX1^ENSG00000159216.19" ; ID "RUNX1--CBY1^ENST00000300305.7" ; Parent "RUNX1--CBY1^RUNX1^ENSG00000159216.19" ; ccdsid "CCDS13639.1" ; exon_id "ENSE00001317351.1" ; exon_number 1 ; gene_id "RUNX1--CBY1^RUNX1^ENSG00000159216.19" ; gene_name RUNX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086299.10" ; havana_transcript "OTTHUMT00000194231.1" ; hgnc_id "HGNC:10471" ; level 2 ; orig_coord_info "chr21,35048842,35048899,-" ; protein_id "ENSP00000300305.3" ; tag basic appris_principal_4 CCDS ; transcript_id "RUNX1--CBY1^ENST00000300305.7" ; transcript_name "RUNX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RUNX1--TOMM22 HAVANA gene 44667 48131 . + . FI_gene_label "TOMM22^ENSG00000100216.6" ; ID "RUNX1--TOMM22^TOMM22^ENSG00000100216.6" ; ccdsid "CCDS13975.1" ; exon_id "ENSE00000880314.6" ; exon_number 1 ; gene_id "RUNX1--TOMM22^TOMM22^ENSG00000100216.6" ; gene_name TOMM22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150991.3" ; havana_transcript "OTTHUMT00000320842.3" ; hgnc_id "HGNC:18002" ; level 2 ; orig_coord_info "chr22,38681979,38682095,+" ; protein_id "ENSP00000216034.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RUNX1--TOMM22^ENST00000216034.6" ; transcript_name "TOMM22-201" ; transcript_support_level 1 ; transcript_type protein_coding
RUNX1--TOMM22 HAVANA mRNA 44667 48131 . + . FI_gene_label "TOMM22^ENSG00000100216.6" ; ID "RUNX1--TOMM22^ENST00000216034.6" ; Parent "RUNX1--TOMM22^TOMM22^ENSG00000100216.6" ; ccdsid "CCDS13975.1" ; exon_id "ENSE00000880314.6" ; exon_number 1 ; gene_id "RUNX1--TOMM22^TOMM22^ENSG00000100216.6" ; gene_name TOMM22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150991.3" ; havana_transcript "OTTHUMT00000320842.3" ; hgnc_id "HGNC:18002" ; level 2 ; orig_coord_info "chr22,38681979,38682095,+" ; protein_id "ENSP00000216034.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RUNX1--TOMM22^ENST00000216034.6" ; transcript_name "TOMM22-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RUNX1--TOMM22 HAVANA gene 20606 41666 . + . FI_gene_label "RUNX1^ENSG00000159216.19" ; ID "RUNX1--TOMM22^RUNX1^ENSG00000159216.19" ; ccdsid "CCDS13639.1" ; exon_id "ENSE00001317351.1" ; exon_number 1 ; gene_id "RUNX1--TOMM22^RUNX1^ENSG00000159216.19" ; gene_name RUNX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086299.10" ; havana_transcript "OTTHUMT00000194231.1" ; hgnc_id "HGNC:10471" ; level 2 ; orig_coord_info "chr21,35048842,35048899,-" ; protein_id "ENSP00000300305.3" ; tag basic appris_principal_4 CCDS ; transcript_id "RUNX1--TOMM22^ENST00000300305.7" ; transcript_name "RUNX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RUNX1--TOMM22 HAVANA mRNA 20606 41666 . + . FI_gene_label "RUNX1^ENSG00000159216.19" ; ID "RUNX1--TOMM22^ENST00000300305.7" ; Parent "RUNX1--TOMM22^RUNX1^ENSG00000159216.19" ; ccdsid "CCDS13639.1" ; exon_id "ENSE00001317351.1" ; exon_number 1 ; gene_id "RUNX1--TOMM22^RUNX1^ENSG00000159216.19" ; gene_name RUNX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086299.10" ; havana_transcript "OTTHUMT00000194231.1" ; hgnc_id "HGNC:10471" ; level 2 ; orig_coord_info "chr21,35048842,35048899,-" ; protein_id "ENSP00000300305.3" ; tag basic appris_principal_4 CCDS ; transcript_id "RUNX1--TOMM22^ENST00000300305.7" ; transcript_name "RUNX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC39A11--CASC17 HAVANA gene 1020 24927 . + . FI_gene_label "SLC39A11^ENSG00000133195.11" ; ID "SLC39A11--CASC17^SLC39A11^ENSG00000133195.11" ; ccdsid "CCDS11690.1" ; exon_id "ENSE00003519818.1" ; exon_number 2 ; gene_id "SLC39A11--CASC17^SLC39A11^ENSG00000133195.11" ; gene_name SLC39A11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178306.5" ; havana_transcript "OTTHUMT00000441441.1" ; hgnc_id "HGNC:14463" ; level 2 ; orig_coord_info "chr17,73088657,73088764,-" ; protein_id "ENSP00000255559.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SLC39A11--CASC17^ENST00000255559.7" ; transcript_name "SLC39A11-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC39A11--CASC17 HAVANA mRNA 1020 24927 . + . FI_gene_label "SLC39A11^ENSG00000133195.11" ; ID "SLC39A11--CASC17^ENST00000255559.7" ; Parent "SLC39A11--CASC17^SLC39A11^ENSG00000133195.11" ; ccdsid "CCDS11690.1" ; exon_id "ENSE00003519818.1" ; exon_number 2 ; gene_id "SLC39A11--CASC17^SLC39A11^ENSG00000133195.11" ; gene_name SLC39A11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178306.5" ; havana_transcript "OTTHUMT00000441441.1" ; hgnc_id "HGNC:14463" ; level 2 ; orig_coord_info "chr17,73088657,73088764,-" ; protein_id "ENSP00000255559.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SLC39A11--CASC17^ENST00000255559.7" ; transcript_name "SLC39A11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STXBP4--ANKFN1 HAVANA gene 44200 78662 . + . FI_gene_label "ANKFN1^ENSG00000153930.12" ; ID "STXBP4--ANKFN1^ANKFN1^ENSG00000153930.12" ; ccdsid "CCDS32686.1" ; exon_id "ENSE00001239155.3" ; exon_number 1 ; gene_id "STXBP4--ANKFN1^ANKFN1^ENSG00000153930.12" ; gene_name ANKFN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155010.6" ; havana_transcript "OTTHUMT00000338043.1" ; hgnc_id "HGNC:26766" ; level 2 ; orig_coord_info "chr17,56153510,56153530,+" ; protein_id "ENSP00000321627.2" ; tag basic appris_principal_2 CCDS ; transcript_id "STXBP4--ANKFN1^ENST00000318698.6" ; transcript_name "ANKFN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
STXBP4--ANKFN1 HAVANA mRNA 44200 78662 . + . FI_gene_label "ANKFN1^ENSG00000153930.12" ; ID "STXBP4--ANKFN1^ENST00000318698.6" ; Parent "STXBP4--ANKFN1^ANKFN1^ENSG00000153930.12" ; ccdsid "CCDS32686.1" ; exon_id "ENSE00001239155.3" ; exon_number 1 ; gene_id "STXBP4--ANKFN1^ANKFN1^ENSG00000153930.12" ; gene_name ANKFN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155010.6" ; havana_transcript "OTTHUMT00000338043.1" ; hgnc_id "HGNC:26766" ; level 2 ; orig_coord_info "chr17,56153510,56153530,+" ; protein_id "ENSP00000321627.2" ; tag basic appris_principal_2 CCDS ; transcript_id "STXBP4--ANKFN1^ENST00000318698.6" ; transcript_name "ANKFN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
STXBP4--ANKFN1 HAVANA gene 1039 34421 . + . FI_gene_label "STXBP4^ENSG00000166263.13" ; ID "STXBP4--ANKFN1^STXBP4^ENSG00000166263.13" ; ccdsid "CCDS11584.2" ; exon_id "ENSE00003534498.1" ; exon_number 3 ; gene_id "STXBP4--ANKFN1^STXBP4^ENSG00000166263.13" ; gene_name STXBP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000074043.5" ; havana_transcript "OTTHUMT00000157184.2" ; hgnc_id "HGNC:19694" ; level 2 ; orig_coord_info "chr17,54986220,54986266,+" ; protein_id "ENSP00000365530.2" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_2 CCDS ; transcript_id "STXBP4--ANKFN1^ENST00000376352.6" ; transcript_name "STXBP4-201" ; transcript_support_level 2 ; transcript_type protein_coding
STXBP4--ANKFN1 HAVANA mRNA 1039 34421 . + . FI_gene_label "STXBP4^ENSG00000166263.13" ; ID "STXBP4--ANKFN1^ENST00000376352.6" ; Parent "STXBP4--ANKFN1^STXBP4^ENSG00000166263.13" ; ccdsid "CCDS11584.2" ; exon_id "ENSE00003534498.1" ; exon_number 3 ; gene_id "STXBP4--ANKFN1^STXBP4^ENSG00000166263.13" ; gene_name STXBP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000074043.5" ; havana_transcript "OTTHUMT00000157184.2" ; hgnc_id "HGNC:19694" ; level 2 ; orig_coord_info "chr17,54986220,54986266,+" ; protein_id "ENSP00000365530.2" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_2 CCDS ; transcript_id "STXBP4--ANKFN1^ENST00000376352.6" ; transcript_name "STXBP4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SYNGR1--RANGAP1 HAVANA gene 1025 5030 . + . FI_gene_label "SYNGR1^ENSG00000100321.15" ; ID "SYNGR1--RANGAP1^SYNGR1^ENSG00000100321.15" ; exon_id "ENSE00001278573.3" ; exon_number 1 ; gene_id "SYNGR1--RANGAP1^SYNGR1^ENSG00000100321.15" ; gene_name SYNGR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030978.6" ; havana_transcript "OTTHUMT00000259136.1" ; hgnc_id "HGNC:11498" ; level 1 ; orig_coord_info "chr22,39350011,39350109,+" ; protein_id "ENSP00000216155.7" ; tag basic exp_conf ; transcript_id "SYNGR1--RANGAP1^ENST00000216155.11" ; transcript_name "SYNGR1-201" ; transcript_support_level 3 ; transcript_type protein_coding
SYNGR1--RANGAP1 HAVANA mRNA 1025 5030 . + . FI_gene_label "SYNGR1^ENSG00000100321.15" ; ID "SYNGR1--RANGAP1^ENST00000216155.11" ; Parent "SYNGR1--RANGAP1^SYNGR1^ENSG00000100321.15" ; exon_id "ENSE00001278573.3" ; exon_number 1 ; gene_id "SYNGR1--RANGAP1^SYNGR1^ENSG00000100321.15" ; gene_name SYNGR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030978.6" ; havana_transcript "OTTHUMT00000259136.1" ; hgnc_id "HGNC:11498" ; level 1 ; orig_coord_info "chr22,39350011,39350109,+" ; protein_id "ENSP00000216155.7" ; tag basic exp_conf ; transcript_id "SYNGR1--RANGAP1^ENST00000216155.11" ; transcript_name "SYNGR1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
SYNGR1--RANGAP1 HAVANA gene 15267 34393 . + . FI_gene_label "RANGAP1^ENSG00000100401.20" ; ID "SYNGR1--RANGAP1^RANGAP1^ENSG00000100401.20" ; ccdsid "CCDS14012.1" ; exon_id "ENSE00003792004.1" ; exon_number 2 ; gene_id "SYNGR1--RANGAP1^RANGAP1^ENSG00000100401.20" ; gene_name RANGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150940.12" ; havana_transcript "OTTHUMT00000320603.1" ; hgnc_id "HGNC:9854" ; level 2 ; orig_coord_info "chr22,41280933,41281044,-" ; protein_id "ENSP00000348577.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SYNGR1--RANGAP1^ENST00000356244.8" ; transcript_name "RANGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SYNGR1--RANGAP1 HAVANA mRNA 15267 34393 . + . FI_gene_label "RANGAP1^ENSG00000100401.20" ; ID "SYNGR1--RANGAP1^ENST00000356244.8" ; Parent "SYNGR1--RANGAP1^RANGAP1^ENSG00000100401.20" ; ccdsid "CCDS14012.1" ; exon_id "ENSE00003792004.1" ; exon_number 2 ; gene_id "SYNGR1--RANGAP1^RANGAP1^ENSG00000100401.20" ; gene_name RANGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150940.12" ; havana_transcript "OTTHUMT00000320603.1" ; hgnc_id "HGNC:9854" ; level 2 ; orig_coord_info "chr22,41280933,41281044,-" ; protein_id "ENSP00000348577.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SYNGR1--RANGAP1^ENST00000356244.8" ; transcript_name "RANGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIM37--TBC1D3P2 HAVANA gene 1042 31196 . + . FI_gene_label "TRIM37^ENSG00000108395.14" ; ID "TRIM37--TBC1D3P2^TRIM37^ENSG00000108395.14" ; ccdsid "CCDS32694.1" ; exon_id "ENSE00002732324.2" ; exon_number 1 ; gene_id "TRIM37--TBC1D3P2^TRIM37^ENSG00000108395.14" ; gene_name TRIM37 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179360.3" ; havana_transcript "OTTHUMT00000445930.2" ; hgnc_id "HGNC:7523" ; level 2 ; orig_coord_info "chr17,59106441,59106461,-" ; protein_id "ENSP00000262294.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRIM37--TBC1D3P2^ENST00000262294.12" ; transcript_name "TRIM37-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIM37--TBC1D3P2 HAVANA mRNA 1042 31196 . + . FI_gene_label "TRIM37^ENSG00000108395.14" ; ID "TRIM37--TBC1D3P2^ENST00000262294.12" ; Parent "TRIM37--TBC1D3P2^TRIM37^ENSG00000108395.14" ; ccdsid "CCDS32694.1" ; exon_id "ENSE00002732324.2" ; exon_number 1 ; gene_id "TRIM37--TBC1D3P2^TRIM37^ENSG00000108395.14" ; gene_name TRIM37 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179360.3" ; havana_transcript "OTTHUMT00000445930.2" ; hgnc_id "HGNC:7523" ; level 2 ; orig_coord_info "chr17,59106441,59106461,-" ; protein_id "ENSP00000262294.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRIM37--TBC1D3P2^ENST00000262294.12" ; transcript_name "TRIM37-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIM44--AC061997.1 HAVANA gene 1001 19107 . + . FI_gene_label "TRIM44^ENSG00000166326.7" ; ID "TRIM44--AC061997.1^TRIM44^ENSG00000166326.7" ; ccdsid "CCDS31461.1" ; exon_id "ENSE00001120260.3" ; exon_number 1 ; gene_id "TRIM44--AC061997.1^TRIM44^ENSG00000166326.7" ; gene_name TRIM44 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166312.3" ; havana_transcript "OTTHUMT00000389081.3" ; hgnc_id "HGNC:19016" ; level 2 ; orig_coord_info "chr11,35663112,35663780,+" ; protein_id "ENSP00000299413.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRIM44--AC061997.1^ENST00000299413.7" ; transcript_name "TRIM44-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIM44--AC061997.1 HAVANA mRNA 1001 19107 . + . FI_gene_label "TRIM44^ENSG00000166326.7" ; ID "TRIM44--AC061997.1^ENST00000299413.7" ; Parent "TRIM44--AC061997.1^TRIM44^ENSG00000166326.7" ; ccdsid "CCDS31461.1" ; exon_id "ENSE00001120260.3" ; exon_number 1 ; gene_id "TRIM44--AC061997.1^TRIM44^ENSG00000166326.7" ; gene_name TRIM44 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166312.3" ; havana_transcript "OTTHUMT00000389081.3" ; hgnc_id "HGNC:19016" ; level 2 ; orig_coord_info "chr11,35663112,35663780,+" ; protein_id "ENSP00000299413.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRIM44--AC061997.1^ENST00000299413.7" ; transcript_name "TRIM44-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIM44--AC104042.1 HAVANA gene 1001 19107 . + . FI_gene_label "TRIM44^ENSG00000166326.7" ; ID "TRIM44--AC104042.1^TRIM44^ENSG00000166326.7" ; ccdsid "CCDS31461.1" ; exon_id "ENSE00001120260.3" ; exon_number 1 ; gene_id "TRIM44--AC104042.1^TRIM44^ENSG00000166326.7" ; gene_name TRIM44 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166312.3" ; havana_transcript "OTTHUMT00000389081.3" ; hgnc_id "HGNC:19016" ; level 2 ; orig_coord_info "chr11,35663112,35663780,+" ; protein_id "ENSP00000299413.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRIM44--AC104042.1^ENST00000299413.7" ; transcript_name "TRIM44-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIM44--AC104042.1 HAVANA mRNA 1001 19107 . + . FI_gene_label "TRIM44^ENSG00000166326.7" ; ID "TRIM44--AC104042.1^ENST00000299413.7" ; Parent "TRIM44--AC104042.1^TRIM44^ENSG00000166326.7" ; ccdsid "CCDS31461.1" ; exon_id "ENSE00001120260.3" ; exon_number 1 ; gene_id "TRIM44--AC104042.1^TRIM44^ENSG00000166326.7" ; gene_name TRIM44 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166312.3" ; havana_transcript "OTTHUMT00000389081.3" ; hgnc_id "HGNC:19016" ; level 2 ; orig_coord_info "chr11,35663112,35663780,+" ; protein_id "ENSP00000299413.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRIM44--AC104042.1^ENST00000299413.7" ; transcript_name "TRIM44-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TSPOAP1--PCTP HAVANA gene 1036 24771 . + . FI_gene_label "TSPOAP1^ENSG00000005379.17" ; ID "TSPOAP1--PCTP^TSPOAP1^ENSG00000005379.17" ; ccdsid "CCDS45742.1" ; exon_id "ENSE00002693365.1" ; exon_number 1 ; gene_id "TSPOAP1--PCTP^TSPOAP1^ENSG00000005379.17" ; gene_name TSPOAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178923.5" ; havana_transcript "OTTHUMT00000443978.1" ; hgnc_id "HGNC:16831" ; level 2 ; orig_coord_info "chr17,58327588,58327920,-" ; protein_id "ENSP00000268893.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "TSPOAP1--PCTP^ENST00000268893.10" ; transcript_name "TSPOAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TSPOAP1--PCTP HAVANA mRNA 1036 24771 . + . FI_gene_label "TSPOAP1^ENSG00000005379.17" ; ID "TSPOAP1--PCTP^ENST00000268893.10" ; Parent "TSPOAP1--PCTP^TSPOAP1^ENSG00000005379.17" ; ccdsid "CCDS45742.1" ; exon_id "ENSE00002693365.1" ; exon_number 1 ; gene_id "TSPOAP1--PCTP^TSPOAP1^ENSG00000005379.17" ; gene_name TSPOAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178923.5" ; havana_transcript "OTTHUMT00000443978.1" ; hgnc_id "HGNC:16831" ; level 2 ; orig_coord_info "chr17,58327588,58327920,-" ; protein_id "ENSP00000268893.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "TSPOAP1--PCTP^ENST00000268893.10" ; transcript_name "TSPOAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TSPOAP1--PCTP HAVANA gene 27775 37393 . + . FI_gene_label "PCTP^ENSG00000141179.14" ; ID "TSPOAP1--PCTP^PCTP^ENSG00000141179.14" ; ccdsid "CCDS11588.1" ; exon_id "ENSE00002969634.2" ; exon_number 1 ; gene_id "TSPOAP1--PCTP^PCTP^ENSG00000141179.14" ; gene_name PCTP ; gene_type protein_coding ; havana_gene "OTTHUMG00000177859.3" ; havana_transcript "OTTHUMT00000439271.3" ; hgnc_id "HGNC:8752" ; level 2 ; orig_coord_info "chr17,55751104,55751244,+" ; protein_id "ENSP00000268896.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TSPOAP1--PCTP^ENST00000268896.10" ; transcript_name "PCTP-201" ; transcript_support_level 1 ; transcript_type protein_coding
TSPOAP1--PCTP HAVANA mRNA 27775 37393 . + . FI_gene_label "PCTP^ENSG00000141179.14" ; ID "TSPOAP1--PCTP^ENST00000268896.10" ; Parent "TSPOAP1--PCTP^PCTP^ENSG00000141179.14" ; ccdsid "CCDS11588.1" ; exon_id "ENSE00002969634.2" ; exon_number 1 ; gene_id "TSPOAP1--PCTP^PCTP^ENSG00000141179.14" ; gene_name PCTP ; gene_type protein_coding ; havana_gene "OTTHUMG00000177859.3" ; havana_transcript "OTTHUMT00000439271.3" ; hgnc_id "HGNC:8752" ; level 2 ; orig_coord_info "chr17,55751104,55751244,+" ; protein_id "ENSP00000268896.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TSPOAP1--PCTP^ENST00000268896.10" ; transcript_name "PCTP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTC17--EXT2 HAVANA gene 1001 34235 . + . FI_gene_label "TTC17^ENSG00000052841.15" ; ID "TTC17--EXT2^TTC17^ENSG00000052841.15" ; ccdsid "CCDS31466.1" ; exon_id "ENSE00001406712.2" ; exon_number 1 ; gene_id "TTC17--EXT2^TTC17^ENSG00000052841.15" ; gene_name TTC17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166398.6" ; havana_transcript "OTTHUMT00000389577.3" ; hgnc_id "HGNC:25596" ; level 2 ; orig_coord_info "chr11,43358955,43359113,+" ; protein_id "ENSP00000039989.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTC17--EXT2^ENST00000039989.9" ; transcript_name "TTC17-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTC17--EXT2 HAVANA mRNA 1001 34235 . + . FI_gene_label "TTC17^ENSG00000052841.15" ; ID "TTC17--EXT2^ENST00000039989.9" ; Parent "TTC17--EXT2^TTC17^ENSG00000052841.15" ; ccdsid "CCDS31466.1" ; exon_id "ENSE00001406712.2" ; exon_number 1 ; gene_id "TTC17--EXT2^TTC17^ENSG00000052841.15" ; gene_name TTC17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166398.6" ; havana_transcript "OTTHUMT00000389577.3" ; hgnc_id "HGNC:25596" ; level 2 ; orig_coord_info "chr11,43358955,43359113,+" ; protein_id "ENSP00000039989.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTC17--EXT2^ENST00000039989.9" ; transcript_name "TTC17-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTC17--EXT2 HAVANA gene 37788 59555 . + . FI_gene_label "EXT2^ENSG00000151348.15" ; ID "TTC17--EXT2^EXT2^ENSG00000151348.15" ; ccdsid "CCDS7908.1" ; exon_id "ENSE00003545357.1" ; exon_number 2 ; gene_id "TTC17--EXT2^EXT2^ENSG00000151348.15" ; gene_name EXT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166498.4" ; havana_transcript "OTTHUMT00000390074.1" ; hgnc_id "HGNC:3513" ; level 2 ; orig_coord_info "chr11,44107713,44108248,+" ; protein_id "ENSP00000342656.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "TTC17--EXT2^ENST00000343631.3" ; transcript_name "EXT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTC17--EXT2 HAVANA mRNA 37788 59555 . + . FI_gene_label "EXT2^ENSG00000151348.15" ; ID "TTC17--EXT2^ENST00000343631.3" ; Parent "TTC17--EXT2^EXT2^ENSG00000151348.15" ; ccdsid "CCDS7908.1" ; exon_id "ENSE00003545357.1" ; exon_number 2 ; gene_id "TTC17--EXT2^EXT2^ENSG00000151348.15" ; gene_name EXT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166498.4" ; havana_transcript "OTTHUMT00000390074.1" ; hgnc_id "HGNC:3513" ; level 2 ; orig_coord_info "chr11,44107713,44108248,+" ; protein_id "ENSP00000342656.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "TTC17--EXT2^ENST00000343631.3" ; transcript_name "EXT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UBE2Z--DSCAM HAVANA gene 1001 12013 . + . FI_gene_label "UBE2Z^ENSG00000159202.18" ; ID "UBE2Z--DSCAM^UBE2Z^ENSG00000159202.18" ; ccdsid "CCDS11540.2" ; exon_id "ENSE00001941444.2" ; exon_number 1 ; gene_id "UBE2Z--DSCAM^UBE2Z^ENSG00000159202.18" ; gene_name UBE2Z ; gene_type protein_coding ; havana_gene "OTTHUMG00000150521.7" ; havana_transcript "OTTHUMT00000318724.3" ; hgnc_id "HGNC:25847" ; level 2 ; orig_coord_info "chr17,48908504,48908820,+" ; protein_id "ENSP00000354201.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UBE2Z--DSCAM^ENST00000360943.10" ; transcript_name "UBE2Z-201" ; transcript_support_level 1 ; transcript_type protein_coding
UBE2Z--DSCAM HAVANA mRNA 1001 12013 . + . FI_gene_label "UBE2Z^ENSG00000159202.18" ; ID "UBE2Z--DSCAM^ENST00000360943.10" ; Parent "UBE2Z--DSCAM^UBE2Z^ENSG00000159202.18" ; ccdsid "CCDS11540.2" ; exon_id "ENSE00001941444.2" ; exon_number 1 ; gene_id "UBE2Z--DSCAM^UBE2Z^ENSG00000159202.18" ; gene_name UBE2Z ; gene_type protein_coding ; havana_gene "OTTHUMG00000150521.7" ; havana_transcript "OTTHUMT00000318724.3" ; hgnc_id "HGNC:25847" ; level 2 ; orig_coord_info "chr17,48908504,48908820,+" ; protein_id "ENSP00000354201.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UBE2Z--DSCAM^ENST00000360943.10" ; transcript_name "UBE2Z-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UBE2Z--DSCAM HAVANA gene 15014 54982 . + . FI_gene_label "DSCAM^ENSG00000171587.15" ; ID "UBE2Z--DSCAM^DSCAM^ENSG00000171587.15" ; ccdsid "CCDS42929.1" ; exon_id "ENSE00001543050.2" ; exon_number 1 ; gene_id "UBE2Z--DSCAM^DSCAM^ENSG00000171587.15" ; gene_name DSCAM ; gene_type protein_coding ; havana_gene "OTTHUMG00000086732.2" ; havana_transcript "OTTHUMT00000195029.2" ; hgnc_id "HGNC:3039" ; level 2 ; orig_coord_info "chr21,40846619,40846661,-" ; protein_id "ENSP00000383303.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UBE2Z--DSCAM^ENST00000400454.6" ; transcript_name "DSCAM-201" ; transcript_support_level 1 ; transcript_type protein_coding
UBE2Z--DSCAM HAVANA mRNA 15014 54982 . + . FI_gene_label "DSCAM^ENSG00000171587.15" ; ID "UBE2Z--DSCAM^ENST00000400454.6" ; Parent "UBE2Z--DSCAM^DSCAM^ENSG00000171587.15" ; ccdsid "CCDS42929.1" ; exon_id "ENSE00001543050.2" ; exon_number 1 ; gene_id "UBE2Z--DSCAM^DSCAM^ENSG00000171587.15" ; gene_name DSCAM ; gene_type protein_coding ; havana_gene "OTTHUMG00000086732.2" ; havana_transcript "OTTHUMT00000195029.2" ; hgnc_id "HGNC:3039" ; level 2 ; orig_coord_info "chr21,40846619,40846661,-" ; protein_id "ENSP00000383303.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UBE2Z--DSCAM^ENST00000400454.6" ; transcript_name "DSCAM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
YPEL2--CA10 HAVANA gene 17387 33439 . + . FI_gene_label "CA10^ENSG00000154975.14" ; ID "YPEL2--CA10^CA10^ENSG00000154975.14" ; ccdsid "CCDS32684.1" ; exon_id "ENSE00001385786.3" ; exon_number 2 ; gene_id "YPEL2--CA10^CA10^ENSG00000154975.14" ; gene_name CA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177544.4" ; havana_transcript "OTTHUMT00000437480.1" ; hgnc_id "HGNC:1369" ; level 1 ; orig_coord_info "chr17,52157726,52157786,-" ; protein_id "ENSP00000285273.4" ; tag basic appris_principal_1 exp_conf CCDS ; transcript_id "YPEL2--CA10^ENST00000285273.8" ; transcript_name "CA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
YPEL2--CA10 HAVANA mRNA 17387 33439 . + . FI_gene_label "CA10^ENSG00000154975.14" ; ID "YPEL2--CA10^ENST00000285273.8" ; Parent "YPEL2--CA10^CA10^ENSG00000154975.14" ; ccdsid "CCDS32684.1" ; exon_id "ENSE00001385786.3" ; exon_number 2 ; gene_id "YPEL2--CA10^CA10^ENSG00000154975.14" ; gene_name CA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177544.4" ; havana_transcript "OTTHUMT00000437480.1" ; hgnc_id "HGNC:1369" ; level 1 ; orig_coord_info "chr17,52157726,52157786,-" ; protein_id "ENSP00000285273.4" ; tag basic appris_principal_1 exp_conf CCDS ; transcript_id "YPEL2--CA10^ENST00000285273.8" ; transcript_name "CA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
YPEL2--CA10 HAVANA gene 1001 14170 . + . FI_gene_label "YPEL2^ENSG00000175155.11" ; ID "YPEL2--CA10^YPEL2^ENSG00000175155.11" ; ccdsid "CCDS32695.1" ; exon_id "ENSE00001324083.6" ; exon_number 2 ; gene_id "YPEL2--CA10^YPEL2^ENSG00000175155.11" ; gene_name YPEL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179378.3" ; havana_transcript "OTTHUMT00000446032.2" ; hgnc_id "HGNC:18326" ; level 2 ; orig_coord_info "chr17,59353410,59353526,+" ; protein_id "ENSP00000312272.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "YPEL2--CA10^ENST00000312655.9" ; transcript_name "YPEL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
YPEL2--CA10 HAVANA mRNA 1001 14170 . + . FI_gene_label "YPEL2^ENSG00000175155.11" ; ID "YPEL2--CA10^ENST00000312655.9" ; Parent "YPEL2--CA10^YPEL2^ENSG00000175155.11" ; ccdsid "CCDS32695.1" ; exon_id "ENSE00001324083.6" ; exon_number 2 ; gene_id "YPEL2--CA10^YPEL2^ENSG00000175155.11" ; gene_name YPEL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179378.3" ; havana_transcript "OTTHUMT00000446032.2" ; hgnc_id "HGNC:18326" ; level 2 ; orig_coord_info "chr17,59353410,59353526,+" ; protein_id "ENSP00000312272.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "YPEL2--CA10^ENST00000312655.9" ; transcript_name "YPEL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAGE2--BCAS3 HAVANA gene 1056 13259 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "BAGE2--BCAS3^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "BAGE2--BCAS3^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "BAGE2--BCAS3^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
BAGE2--BCAS3 HAVANA RNA 1056 13259 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "BAGE2--BCAS3^ENST00000470054.5" ; Parent "BAGE2--BCAS3^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "BAGE2--BCAS3^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "BAGE2--BCAS3^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
HOXB7--AC008443.2 HAVANA gene 7654 9202 . + . FI_gene_label "AC008443.2^ENSG00000248103.1" ; ID "HOXB7--AC008443.2^AC008443.2^ENSG00000248103.1" ; exon_id "ENSE00002038514.1" ; exon_number 1 ; gene_id "HOXB7--AC008443.2^AC008443.2^ENSG00000248103.1" ; gene_name "AC008443.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163377.1" ; havana_transcript "OTTHUMT00000372940.1" ; level 1 ; orig_coord_info "chr5,181281375,181281612,+" ; tag basic exp_conf ; transcript_id "HOXB7--AC008443.2^ENST00000412295.2" ; transcript_name "AC008443.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
HOXB7--AC008443.2 HAVANA RNA 7654 9202 . + . FI_gene_label "AC008443.2^ENSG00000248103.1" ; ID "HOXB7--AC008443.2^ENST00000412295.2" ; Parent "HOXB7--AC008443.2^AC008443.2^ENSG00000248103.1" ; exon_id "ENSE00002038514.1" ; exon_number 1 ; gene_id "HOXB7--AC008443.2^AC008443.2^ENSG00000248103.1" ; gene_name "AC008443.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163377.1" ; havana_transcript "OTTHUMT00000372940.1" ; level 1 ; orig_coord_info "chr5,181281375,181281612,+" ; tag basic exp_conf ; transcript_id "HOXB7--AC008443.2^ENST00000412295.2" ; transcript_name "AC008443.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
HOXB7--BAGE2 HAVANA gene 7709 19912 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "HOXB7--BAGE2^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "HOXB7--BAGE2^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "HOXB7--BAGE2^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
HOXB7--BAGE2 HAVANA RNA 7709 19912 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "HOXB7--BAGE2^ENST00000470054.5" ; Parent "HOXB7--BAGE2^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "HOXB7--BAGE2^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "HOXB7--BAGE2^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
MALAT1--SF3B2 HAVANA gene 5161 6922 . + . FI_gene_label "MALAT1^ENSG00000251562.8" ; ID "MALAT1--SF3B2^MALAT1^ENSG00000251562.8" ; exon_id "ENSE00002321105.2" ; exon_number 1 ; gene_id "MALAT1--SF3B2^MALAT1^ENSG00000251562.8" ; gene_name MALAT1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166322.5" ; havana_transcript "OTTHUMT00000389144.2" ; hgnc_id "HGNC:29665" ; level 2 ; orig_coord_info "chr11,65501848,65502393,+" ; tag basic ; transcript_id "MALAT1--SF3B2^ENST00000508832.2" ; transcript_name "MALAT1-201" ; transcript_support_level 2 ; transcript_type lncRNA
MALAT1--SF3B2 HAVANA RNA 5161 6922 . + . FI_gene_label "MALAT1^ENSG00000251562.8" ; ID "MALAT1--SF3B2^ENST00000508832.2" ; Parent "MALAT1--SF3B2^MALAT1^ENSG00000251562.8" ; exon_id "ENSE00002321105.2" ; exon_number 1 ; gene_id "MALAT1--SF3B2^MALAT1^ENSG00000251562.8" ; gene_name MALAT1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166322.5" ; havana_transcript "OTTHUMT00000389144.2" ; hgnc_id "HGNC:29665" ; level 2 ; orig_coord_info "chr11,65501848,65502393,+" ; tag basic ; transcript_id "MALAT1--SF3B2^ENST00000508832.2" ; transcript_name "MALAT1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
PACSIN2--AL021707.1 HAVANA gene 28113 29612 . + . FI_gene_label "AL021707.1^ENSG00000225450.1" ; ID "PACSIN2--AL021707.1^AL021707.1^ENSG00000225450.1" ; exon_id "ENSE00001680293.1" ; exon_number 1 ; gene_id "PACSIN2--AL021707.1^AL021707.1^ENSG00000225450.1" ; gene_name "AL021707.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000151003.1" ; havana_transcript "OTTHUMT00000320914.1" ; level 1 ; orig_coord_info "chr22,38739003,38739167,+" ; tag basic exp_conf ; transcript_id "PACSIN2--AL021707.1^ENST00000416406.1" ; transcript_name "AL021707.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
PACSIN2--AL021707.1 HAVANA RNA 28113 29612 . + . FI_gene_label "AL021707.1^ENSG00000225450.1" ; ID "PACSIN2--AL021707.1^ENST00000416406.1" ; Parent "PACSIN2--AL021707.1^AL021707.1^ENSG00000225450.1" ; exon_id "ENSE00001680293.1" ; exon_number 1 ; gene_id "PACSIN2--AL021707.1^AL021707.1^ENSG00000225450.1" ; gene_name "AL021707.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000151003.1" ; havana_transcript "OTTHUMT00000320914.1" ; level 1 ; orig_coord_info "chr22,38739003,38739167,+" ; tag basic exp_conf ; transcript_id "PACSIN2--AL021707.1^ENST00000416406.1" ; transcript_name "AL021707.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
POLD3--AP001992.1 HAVANA gene 28731 29109 . + . FI_gene_label "AP001992.1^ENSG00000241170.3" ; ID "POLD3--AP001992.1^AP001992.1^ENSG00000241170.3" ; exon_id "ENSE00001890342.1" ; exon_number 1 ; gene_id "POLD3--AP001992.1^AP001992.1^ENSG00000241170.3" ; gene_name "AP001992.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000158413.3" ; havana_transcript "OTTHUMT00000350949.1" ; level 1 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr11,74919587,74919965,+" ; tag pseudo_consens basic ; transcript_id "POLD3--AP001992.1^ENST00000462248.1" ; transcript_name "AP001992.1-206" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
POLD3--AP001992.1 HAVANA RNA 28731 29109 . + . FI_gene_label "AP001992.1^ENSG00000241170.3" ; ID "POLD3--AP001992.1^ENST00000462248.1" ; Parent "POLD3--AP001992.1^AP001992.1^ENSG00000241170.3" ; exon_id "ENSE00001890342.1" ; exon_number 1 ; gene_id "POLD3--AP001992.1^AP001992.1^ENSG00000241170.3" ; gene_name "AP001992.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000158413.3" ; havana_transcript "OTTHUMT00000350949.1" ; level 1 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr11,74919587,74919965,+" ; tag pseudo_consens basic ; transcript_id "POLD3--AP001992.1^ENST00000462248.1" ; transcript_name "AP001992.1-206" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
L1 and L2 created:
SLC39A11--CASC17 HAVANA gene 27954 39813 . + . FI_gene_label "CASC17^ENSG00000260785.2" ; ID "SLC39A11--CASC17^CASC17^ENSG00000260785.2" ; exon_id "ENSE00002588316.1" ; exon_number 1 ; gene_id "SLC39A11--CASC17^CASC17^ENSG00000260785.2" ; gene_name CASC17 ; gene_type lncRNA ; havana_gene "OTTHUMG00000176079.15" ; havana_transcript "OTTHUMT00000431480.1" ; hgnc_id "HGNC:43911" ; level 2 ; orig_coord_info "chr17,71202104,71202177,-" ; tag basic ; transcript_id "SLC39A11--CASC17^ENST00000569074.1" ; transcript_name "CASC17-201" ; transcript_support_level 1 ; transcript_type lncRNA
SLC39A11--CASC17 HAVANA RNA 27954 39813 . + . FI_gene_label "CASC17^ENSG00000260785.2" ; ID "SLC39A11--CASC17^ENST00000569074.1" ; Parent "SLC39A11--CASC17^CASC17^ENSG00000260785.2" ; exon_id "ENSE00002588316.1" ; exon_number 1 ; gene_id "SLC39A11--CASC17^CASC17^ENSG00000260785.2" ; gene_name CASC17 ; gene_type lncRNA ; havana_gene "OTTHUMG00000176079.15" ; havana_transcript "OTTHUMT00000431480.1" ; hgnc_id "HGNC:43911" ; level 2 ; orig_coord_info "chr17,71202104,71202177,-" ; tag basic ; transcript_id "SLC39A11--CASC17^ENST00000569074.1" ; transcript_name "CASC17-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TRIM37--TBC1D3P2 HAVANA gene 35483 44919 . + . FI_gene_label "TBC1D3P2^ENSG00000188755.10" ; ID "TRIM37--TBC1D3P2^TBC1D3P2^ENSG00000188755.10" ; exon_id "ENSE00002487317.1" ; exon_number 1 ; gene_id "TRIM37--TBC1D3P2^TBC1D3P2^ENSG00000188755.10" ; gene_name TBC1D3P2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000179160.2" ; havana_transcript "OTTHUMT00000445023.1" ; hgnc_id "HGNC:27783" ; level 2 ; orig_coord_info "chr17,62275545,62275655,-" ; tag basic ; transcript_id "TRIM37--TBC1D3P2^ENST00000339120.4" ; transcript_name "TBC1D3P2-201" ; transcript_support_level 2 ; transcript_type processed_transcript
TRIM37--TBC1D3P2 HAVANA RNA 35483 44919 . + . FI_gene_label "TBC1D3P2^ENSG00000188755.10" ; ID "TRIM37--TBC1D3P2^ENST00000339120.4" ; Parent "TRIM37--TBC1D3P2^TBC1D3P2^ENSG00000188755.10" ; exon_id "ENSE00002487317.1" ; exon_number 1 ; gene_id "TRIM37--TBC1D3P2^TBC1D3P2^ENSG00000188755.10" ; gene_name TBC1D3P2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000179160.2" ; havana_transcript "OTTHUMT00000445023.1" ; hgnc_id "HGNC:27783" ; level 2 ; orig_coord_info "chr17,62275545,62275655,-" ; tag basic ; transcript_id "TRIM37--TBC1D3P2^ENST00000339120.4" ; transcript_name "TBC1D3P2-201" ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created:
TRIM44--AC061997.1 ENSEMBL gene 22108 22203 . + . FI_gene_label "AC061997.1^ENSG00000251838.1" ; ID "TRIM44--AC061997.1^AC061997.1^ENSG00000251838.1" ; exon_id "ENSE00002088306.1" ; exon_number 1 ; gene_id "TRIM44--AC061997.1^AC061997.1^ENSG00000251838.1" ; gene_name "AC061997.1" ; gene_type snoRNA ; level 3 ; orig_coord_info "chr11,37702125,37702220,-" ; tag basic ; transcript_id "TRIM44--AC061997.1^ENST00000516029.1" ; transcript_name "AC061997.1-201" ; transcript_support_level NA ; transcript_type snoRNA
TRIM44--AC061997.1 ENSEMBL RNA 22108 22203 . + . FI_gene_label "AC061997.1^ENSG00000251838.1" ; ID "TRIM44--AC061997.1^ENST00000516029.1" ; Parent "TRIM44--AC061997.1^AC061997.1^ENSG00000251838.1" ; exon_id "ENSE00002088306.1" ; exon_number 1 ; gene_id "TRIM44--AC061997.1^AC061997.1^ENSG00000251838.1" ; gene_name "AC061997.1" ; gene_type snoRNA ; level 3 ; orig_coord_info "chr11,37702125,37702220,-" ; tag basic ; transcript_id "TRIM44--AC061997.1^ENST00000516029.1" ; transcript_name "AC061997.1-201" ; transcript_support_level NA ; transcript_type snoRNA
L1 and L2 created:
TRIM44--AC104042.1 HAVANA gene 22108 23658 . + . FI_gene_label "AC104042.1^ENSG00000254498.1" ; ID "TRIM44--AC104042.1^AC104042.1^ENSG00000254498.1" ; exon_id "ENSE00002168998.1" ; exon_number 1 ; gene_id "TRIM44--AC104042.1^AC104042.1^ENSG00000254498.1" ; gene_name "AC104042.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166332.1" ; havana_transcript "OTTHUMT00000389187.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,36696317,36697090,+" ; tag pseudo_consens basic ; transcript_id "TRIM44--AC104042.1^ENST00000524806.1" ; transcript_name "AC104042.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TRIM44--AC104042.1 HAVANA RNA 22108 23658 . + . FI_gene_label "AC104042.1^ENSG00000254498.1" ; ID "TRIM44--AC104042.1^ENST00000524806.1" ; Parent "TRIM44--AC104042.1^AC104042.1^ENSG00000254498.1" ; exon_id "ENSE00002168998.1" ; exon_number 1 ; gene_id "TRIM44--AC104042.1^AC104042.1^ENSG00000254498.1" ; gene_name "AC104042.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166332.1" ; havana_transcript "OTTHUMT00000389187.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,36696317,36697090,+" ; tag pseudo_consens basic ; transcript_id "TRIM44--AC104042.1^ENST00000524806.1" ; transcript_name "AC104042.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
749 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1272 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 57 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed