File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/97d78b1f2167fcdc8c52178d7c9be6/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-2482ef-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/7f0b12c243fdf8cbd636ce9eb410d9/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/97d78b1f2167fcdc8c52178d7c9be6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/5feb0b6c3dc1ded6008d6510004d31/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/97d78b1f2167fcdc8c52178d7c9be6/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 28891746
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2482ef-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	28891746
Known Splicing Events:	28598308
Partial Novel Splicing Events:	175064
Novel Splicing Events:	105380
Filtered Splicing Events:	12994

Total splicing  Junctions:	169571
Known Splicing Junctions:	151568
Partial Novel Splicing Junctions:	11784
Novel Splicing Junctions:	6219

===================================================================
Create BED file ...
Create Interact file ...