File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/f4cb185612182fe596dacb9b4b05a4/.command.log
Size
1.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_TO_MULTIQC (aih-tih-sc-00d05f-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/f4cb185612182fe596dacb9b4b05a4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/4b91ba8a5237d6b25037ce5114b74e/aih-tih-sc-00d05f-R1_A23WJ53LT4_1/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/f4cb185612182fe596dacb9b4b05a4/.command.run
==> STAGING COMPLETE (3 inputs)

Processing SeqTools file: aih-tih-sc-00d05f-R1_A23WJ53LT4_1_full_basic_stats.tsv
Warning: scipy not available. GC bias calculation will be simplified.
Successfully converted aih-tih-sc-00d05f-R1_A23WJ53LT4_1_full_basic_stats.tsv to aih-tih-sc-00d05f-R1_A23WJ53LT4_1_seqtool_mqc.tsv
  Samples: 1
  SeqTools (general stats) columns: 18
  Metrics: reads, frac_unmapped, frac_dupes, unique_reads, frac_reads_on_target, frac_pairs_on_target, frac_reads_off_target, frac_pairs_off_target, reads_on_target, pairs_on_target, reads_off_target, pairs_off_target, mean_depth, q50_depth, frac_bases_gt30x, frac_bases_gt100x, n_q30, gc_bias