Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/728855942d437e169b55b05735cee9/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/ab1ecef568cb5d38abb03fb63db551/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/728855942d437e169b55b05735cee9/.command.run Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai ==> STAGING COMPLETE (5 inputs) Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-12b72b-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-12b72b-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-12b72b-R1_A23WJ53LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 08:45:18.579 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 08:45:18 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-12b72b-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-12b72b-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-12b72b-R1_A23WJ53LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 08:45:18 GMT 2026] Executing as ?@nf-77728855942d437e169b55b05735cee9-469f9-kxm72 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 08:45:18 MarkDuplicates Start of doWork freeMemory: 105492928; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 08:45:18 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 08:45:18 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 08:45:23 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,374,288 INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 2067 as yet unmatched pairs. 236 records in RAM. INFO 2026-06-08 08:45:25 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,556,630 INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 4048 as yet unmatched pairs. 350 records in RAM. INFO 2026-06-08 08:45:28 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 3s. Last read position: chr1:8,360,978 INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 5801 as yet unmatched pairs. 208 records in RAM. INFO 2026-06-08 08:45:31 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,273,959 INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 7298 as yet unmatched pairs. 84 records in RAM. INFO 2026-06-08 08:45:32 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:15,725,364 INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 9011 as yet unmatched pairs. 127 records in RAM. INFO 2026-06-08 08:45:35 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:17,413,573 INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 10658 as yet unmatched pairs. 90 records in RAM. INFO 2026-06-08 08:45:37 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:19,814,521 INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 12314 as yet unmatched pairs. 55 records in RAM. INFO 2026-06-08 08:45:39 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:21,828,048 INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 14585 as yet unmatched pairs. 622 records in RAM. INFO 2026-06-08 08:45:41 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:21,851,870 INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 16475 as yet unmatched pairs. 725 records in RAM. INFO 2026-06-08 08:45:44 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:21,884,863 INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 18325 as yet unmatched pairs. 811 records in RAM. INFO 2026-06-08 08:45:46 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:22,644,128 INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 20340 as yet unmatched pairs. 1186 records in RAM. INFO 2026-06-08 08:45:48 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:23,802,410 INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 21010 as yet unmatched pairs. 95 records in RAM. INFO 2026-06-08 08:45:50 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:26,863,385 INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 22582 as yet unmatched pairs. 48 records in RAM. INFO 2026-06-08 08:45:51 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:29,120,963 INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 24375 as yet unmatched pairs. 153 records in RAM. INFO 2026-06-08 08:45:54 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:31,698,063 INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 26186 as yet unmatched pairs. 138 records in RAM. INFO 2026-06-08 08:45:56 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:34,988,026 INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 27930 as yet unmatched pairs. 34 records in RAM. INFO 2026-06-08 08:45:58 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:37,997,745 INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 29926 as yet unmatched pairs. 127 records in RAM. INFO 2026-06-08 08:45:59 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:39,565,226 INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 31426 as yet unmatched pairs. 103 records in RAM. INFO 2026-06-08 08:46:02 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:43,442,528 INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 33290 as yet unmatched pairs. 163 records in RAM. INFO 2026-06-08 08:46:04 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:45,634,161 INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 34892 as yet unmatched pairs. 143 records in RAM. INFO 2026-06-08 08:46:06 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:52,431,095 INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 36443 as yet unmatched pairs. 85 records in RAM. INFO 2026-06-08 08:46:09 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 3s. Last read position: chr1:58,782,943 INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 38299 as yet unmatched pairs. 370 records in RAM. INFO 2026-06-08 08:46:11 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:74,205,249 INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 39461 as yet unmatched pairs. 55 records in RAM. INFO 2026-06-08 08:46:12 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:86,494,235 INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 41108 as yet unmatched pairs. 130 records in RAM. INFO 2026-06-08 08:46:14 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:96,806,877 INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 42663 as yet unmatched pairs. 115 records in RAM. INFO 2026-06-08 08:46:16 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:109,924,045 INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 44234 as yet unmatched pairs. 228 records in RAM. INFO 2026-06-08 08:46:17 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:113,941,211 INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 45660 as yet unmatched pairs. 90 records in RAM. INFO 2026-06-08 08:46:19 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:116,974,289 INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 47613 as yet unmatched pairs. 419 records in RAM. INFO 2026-06-08 08:46:21 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:119,997,038 INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 49398 as yet unmatched pairs. 673 records in RAM. INFO 2026-06-08 08:46:23 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:145,994,700 INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 50397 as yet unmatched pairs. 759 records in RAM. INFO 2026-06-08 08:46:24 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:148,583,146 INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 50381 as yet unmatched pairs. 63 records in RAM. INFO 2026-06-08 08:46:25 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:150,150,240 INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 51531 as yet unmatched pairs. 228 records in RAM. INFO 2026-06-08 08:46:27 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:150,806,715 INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 53173 as yet unmatched pairs. 263 records in RAM. INFO 2026-06-08 08:46:29 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:153,543,795 INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 54891 as yet unmatched pairs. 365 records in RAM. INFO 2026-06-08 08:46:30 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:154,214,480 INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 56293 as yet unmatched pairs. 252 records in RAM. INFO 2026-06-08 08:46:32 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:155,056,402 INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 57905 as yet unmatched pairs. 328 records in RAM. INFO 2026-06-08 08:46:33 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:155,757,889 INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 58953 as yet unmatched pairs. 9 records in RAM. INFO 2026-06-08 08:46:35 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,940 INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 64341 as yet unmatched pairs. 3434 records in RAM. INFO 2026-06-08 08:46:36 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:156,939,732 INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 62864 as yet unmatched pairs. 104 records in RAM. INFO 2026-06-08 08:46:38 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:161,048,015 INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 64369 as yet unmatched pairs. 143 records in RAM. INFO 2026-06-08 08:46:40 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:162,770,465 INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 65963 as yet unmatched pairs. 246 records in RAM. INFO 2026-06-08 08:46:41 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,523 INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 67546 as yet unmatched pairs. 297 records in RAM. INFO 2026-06-08 08:46:44 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:180,941,211 INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 68882 as yet unmatched pairs. 18 records in RAM. INFO 2026-06-08 08:46:46 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:185,297,977 INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 70712 as yet unmatched pairs. 81 records in RAM. INFO 2026-06-08 08:46:47 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:198,703,344 INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 72052 as yet unmatched pairs. 59 records in RAM. INFO 2026-06-08 08:46:49 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:201,899,502 INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 73906 as yet unmatched pairs. 332 records in RAM. INFO 2026-06-08 08:46:51 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:203,484,070 INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 75284 as yet unmatched pairs. 84 records in RAM. INFO 2026-06-08 08:46:52 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:205,620,664 INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 76962 as yet unmatched pairs. 177 records in RAM. INFO 2026-06-08 08:46:54 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:206,935,604 INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 81544 as yet unmatched pairs. 3063 records in RAM. INFO 2026-06-08 08:46:55 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:207,886,881 INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 80485 as yet unmatched pairs. 533 records in RAM. INFO 2026-06-08 08:46:57 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:221,706,300 INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 81386 as yet unmatched pairs. 19 records in RAM. INFO 2026-06-08 08:46:58 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:226,146,708 INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 82890 as yet unmatched pairs. 83 records in RAM. INFO 2026-06-08 08:47:00 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:229,477,621 INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 84806 as yet unmatched pairs. 30 records in RAM. INFO 2026-06-08 08:47:01 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:235,990,997 INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 87828 as yet unmatched pairs. 1182 records in RAM. INFO 2026-06-08 08:47:03 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:244,859,359 INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 88809 as yet unmatched pairs. 630 records in RAM. INFO 2026-06-08 08:47:06 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr2:8,813,298 INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 90041 as yet unmatched pairs. 89854 records in RAM. INFO 2026-06-08 08:47:07 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:20,251,612 INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 91572 as yet unmatched pairs. 91385 records in RAM. INFO 2026-06-08 08:47:09 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:26,193,745 INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 93188 as yet unmatched pairs. 92998 records in RAM. INFO 2026-06-08 08:47:10 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:27,215,742 INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 95464 as yet unmatched pairs. 95274 records in RAM. INFO 2026-06-08 08:47:12 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:30,231,718 INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 97123 as yet unmatched pairs. 96932 records in RAM. INFO 2026-06-08 08:47:14 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 248500 as yet unmatched pairs. 91276 records in RAM. INFO 2026-06-08 08:47:17 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,399 INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 852942 as yet unmatched pairs. 68315 records in RAM. INFO 2026-06-08 08:47:19 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 876284 as yet unmatched pairs. 67460 records in RAM. INFO 2026-06-08 08:47:20 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:38,298,452 INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 928457 as yet unmatched pairs. 64399 records in RAM. INFO 2026-06-08 08:47:22 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:43,590,905 INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 926881 as yet unmatched pairs. 62819 records in RAM. INFO 2026-06-08 08:47:23 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:54,456,485 INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 924808 as yet unmatched pairs. 60744 records in RAM. INFO 2026-06-08 08:47:25 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:55,870,806 INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 923782 as yet unmatched pairs. 59709 records in RAM. INFO 2026-06-08 08:47:27 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:66,571,304 INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 922037 as yet unmatched pairs. 57964 records in RAM. INFO 2026-06-08 08:47:28 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:73,076,138 INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 920438 as yet unmatched pairs. 56361 records in RAM. INFO 2026-06-08 08:47:30 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:73,909,090 INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 923595 as yet unmatched pairs. 59518 records in RAM. INFO 2026-06-08 08:47:32 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:74,461,566 INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 917575 as yet unmatched pairs. 53497 records in RAM. INFO 2026-06-08 08:47:34 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:79,122,018 INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 919553 as yet unmatched pairs. 55472 records in RAM. INFO 2026-06-08 08:47:35 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:86,147,707 INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 914359 as yet unmatched pairs. 50273 records in RAM. INFO 2026-06-08 08:47:37 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:96,297,665 INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 913179 as yet unmatched pairs. 49084 records in RAM. INFO 2026-06-08 08:47:38 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:101,859,022 INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 911574 as yet unmatched pairs. 47478 records in RAM. INFO 2026-06-08 08:47:40 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,508 INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 910297 as yet unmatched pairs. 46201 records in RAM. INFO 2026-06-08 08:47:41 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:112,388,874 INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 909576 as yet unmatched pairs. 45477 records in RAM. INFO 2026-06-08 08:47:43 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:127,569,841 INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 907905 as yet unmatched pairs. 43800 records in RAM. INFO 2026-06-08 08:47:44 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:135,865,102 INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 906311 as yet unmatched pairs. 42196 records in RAM. INFO 2026-06-08 08:47:46 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:159,453,641 INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 905045 as yet unmatched pairs. 40929 records in RAM. INFO 2026-06-08 08:47:47 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:172,494,228 INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 903520 as yet unmatched pairs. 39403 records in RAM. INFO 2026-06-08 08:47:49 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:178,600,962 INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 901920 as yet unmatched pairs. 37798 records in RAM. INFO 2026-06-08 08:47:50 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:188,984,936 INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 903594 as yet unmatched pairs. 39468 records in RAM. INFO 2026-06-08 08:47:52 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:188,995,082 INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 903775 as yet unmatched pairs. 39649 records in RAM. INFO 2026-06-08 08:47:54 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:189,002,999 INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 902526 as yet unmatched pairs. 38399 records in RAM. INFO 2026-06-08 08:47:56 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:189,010,797 INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 896441 as yet unmatched pairs. 32313 records in RAM. INFO 2026-06-08 08:47:58 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:190,881,339 INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 893295 as yet unmatched pairs. 29166 records in RAM. INFO 2026-06-08 08:47:59 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:201,475,684 INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 891838 as yet unmatched pairs. 27707 records in RAM. INFO 2026-06-08 08:48:01 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:208,354,052 INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 890326 as yet unmatched pairs. 26195 records in RAM. INFO 2026-06-08 08:48:02 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,373 INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 892454 as yet unmatched pairs. 28323 records in RAM. INFO 2026-06-08 08:48:04 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,939 INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 892288 as yet unmatched pairs. 28157 records in RAM. INFO 2026-06-08 08:48:05 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,576 INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 892028 as yet unmatched pairs. 27896 records in RAM. INFO 2026-06-08 08:48:07 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:215,434,803 INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 888539 as yet unmatched pairs. 24405 records in RAM. INFO 2026-06-08 08:48:08 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:217,817,872 INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 884351 as yet unmatched pairs. 20217 records in RAM. INFO 2026-06-08 08:48:10 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:217,848,921 INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 882989 as yet unmatched pairs. 18854 records in RAM. INFO 2026-06-08 08:48:12 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:219,162,111 INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 880207 as yet unmatched pairs. 16072 records in RAM. INFO 2026-06-08 08:48:14 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:219,419,014 INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 882248 as yet unmatched pairs. 18112 records in RAM. INFO 2026-06-08 08:48:16 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 2s. Last read position: chr2:219,425,735 INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 880568 as yet unmatched pairs. 16430 records in RAM. INFO 2026-06-08 08:48:17 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:224,379,666 INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 874046 as yet unmatched pairs. 9902 records in RAM. INFO 2026-06-08 08:48:19 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:231,456,641 INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 872659 as yet unmatched pairs. 8514 records in RAM. INFO 2026-06-08 08:48:20 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:237,336,275 INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 871873 as yet unmatched pairs. 7724 records in RAM. INFO 2026-06-08 08:48:22 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:237,360,133 INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 871026 as yet unmatched pairs. 6871 records in RAM. INFO 2026-06-08 08:48:23 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:237,374,949 INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 869211 as yet unmatched pairs. 5055 records in RAM. INFO 2026-06-08 08:48:25 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:240,465,121 INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 866012 as yet unmatched pairs. 1856 records in RAM. INFO 2026-06-08 08:48:27 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:382,640 INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 864233 as yet unmatched pairs. 47938 records in RAM. INFO 2026-06-08 08:48:28 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:10,301,042 INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 862528 as yet unmatched pairs. 46230 records in RAM. INFO 2026-06-08 08:48:30 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:14,819,054 INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 860755 as yet unmatched pairs. 44456 records in RAM. INFO 2026-06-08 08:48:31 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:30,691,498 INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 859551 as yet unmatched pairs. 43250 records in RAM. INFO 2026-06-08 08:48:33 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:38,375,176 INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 857474 as yet unmatched pairs. 41170 records in RAM. INFO 2026-06-08 08:48:34 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:42,659,615 INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 855931 as yet unmatched pairs. 39625 records in RAM. INFO 2026-06-08 08:48:36 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:47,083,939 INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 854291 as yet unmatched pairs. 37984 records in RAM. INFO 2026-06-08 08:48:37 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:48,419,841 INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 852643 as yet unmatched pairs. 36336 records in RAM. INFO 2026-06-08 08:48:39 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:49,121,547 INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 850932 as yet unmatched pairs. 34625 records in RAM. INFO 2026-06-08 08:48:41 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:49,718,906 INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 848997 as yet unmatched pairs. 32684 records in RAM. INFO 2026-06-08 08:48:42 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:51,958,324 INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 847163 as yet unmatched pairs. 30849 records in RAM. INFO 2026-06-08 08:48:44 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:52,509,227 INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 845775 as yet unmatched pairs. 29461 records in RAM. INFO 2026-06-08 08:48:46 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr3:52,693,774 INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 843539 as yet unmatched pairs. 27225 records in RAM. INFO 2026-06-08 08:48:48 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:58,634,356 INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 841816 as yet unmatched pairs. 25499 records in RAM. INFO 2026-06-08 08:48:49 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:73,384,396 INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 840331 as yet unmatched pairs. 24012 records in RAM. INFO 2026-06-08 08:48:51 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr3:100,732,637 INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 838691 as yet unmatched pairs. 22365 records in RAM. INFO 2026-06-08 08:48:53 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:112,638,860 INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 837915 as yet unmatched pairs. 21586 records in RAM. INFO 2026-06-08 08:48:54 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:120,646,767 INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 835687 as yet unmatched pairs. 19357 records in RAM. INFO 2026-06-08 08:48:56 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:123,620,207 INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 839087 as yet unmatched pairs. 22757 records in RAM. INFO 2026-06-08 08:48:57 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:125,012,771 INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 832795 as yet unmatched pairs. 16464 records in RAM. INFO 2026-06-08 08:48:59 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:129,260,796 INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 831243 as yet unmatched pairs. 14910 records in RAM. INFO 2026-06-08 08:49:00 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:134,371,397 INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 829407 as yet unmatched pairs. 13073 records in RAM. INFO 2026-06-08 08:49:02 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:149,377,392 INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 827746 as yet unmatched pairs. 11411 records in RAM. INFO 2026-06-08 08:49:03 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:159,886,221 INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 825965 as yet unmatched pairs. 9618 records in RAM. INFO 2026-06-08 08:49:05 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:179,690,252 INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 824514 as yet unmatched pairs. 8166 records in RAM. INFO 2026-06-08 08:49:06 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:184,363,563 INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 823142 as yet unmatched pairs. 6794 records in RAM. INFO 2026-06-08 08:49:08 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:188,524,777 INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 824651 as yet unmatched pairs. 8291 records in RAM. INFO 2026-06-08 08:49:09 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:192,798,508 INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 820038 as yet unmatched pairs. 3678 records in RAM. INFO 2026-06-08 08:49:11 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:195,780,085 INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 820970 as yet unmatched pairs. 4610 records in RAM. INFO 2026-06-08 08:49:12 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:195,783,547 INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 820778 as yet unmatched pairs. 4414 records in RAM. INFO 2026-06-08 08:49:13 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:195,787,875 INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 818191 as yet unmatched pairs. 1823 records in RAM. INFO 2026-06-08 08:49:15 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr4:870,859 INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 816171 as yet unmatched pairs. 28239 records in RAM. INFO 2026-06-08 08:49:16 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:2,689,603 INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 814129 as yet unmatched pairs. 26188 records in RAM. INFO 2026-06-08 08:49:19 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr4:7,043,741 INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 812505 as yet unmatched pairs. 24562 records in RAM. INFO 2026-06-08 08:49:20 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr4:15,985,989 INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 810800 as yet unmatched pairs. 22812 records in RAM. INFO 2026-06-08 08:49:22 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:38,878,242 INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 809001 as yet unmatched pairs. 21002 records in RAM. INFO 2026-06-08 08:49:23 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:54,010,021 INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 807457 as yet unmatched pairs. 19455 records in RAM. INFO 2026-06-08 08:49:24 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:56,489,420 INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 805849 as yet unmatched pairs. 17843 records in RAM. INFO 2026-06-08 08:49:26 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:70,773,543 INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 804270 as yet unmatched pairs. 16261 records in RAM. INFO 2026-06-08 08:49:27 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:78,878,741 INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 802626 as yet unmatched pairs. 14605 records in RAM. INFO 2026-06-08 08:49:29 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:87,480,493 INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 802501 as yet unmatched pairs. 14479 records in RAM. INFO 2026-06-08 08:49:31 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr4:99,072,324 INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 799779 as yet unmatched pairs. 11753 records in RAM. INFO 2026-06-08 08:49:32 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:112,425,664 INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 798209 as yet unmatched pairs. 10177 records in RAM. INFO 2026-06-08 08:49:34 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:119,030,739 INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 800233 as yet unmatched pairs. 12201 records in RAM. INFO 2026-06-08 08:49:36 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr4:119,057,407 INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 795991 as yet unmatched pairs. 7959 records in RAM. INFO 2026-06-08 08:49:37 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:137,521,131 INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 794195 as yet unmatched pairs. 6152 records in RAM. INFO 2026-06-08 08:49:39 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:150,872,670 INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 793028 as yet unmatched pairs. 4984 records in RAM. INFO 2026-06-08 08:49:40 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:155,942,444 INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 791276 as yet unmatched pairs. 3222 records in RAM. INFO 2026-06-08 08:49:42 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:173,528,767 INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 789569 as yet unmatched pairs. 1515 records in RAM. INFO 2026-06-08 08:49:44 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr5:422,728 INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 788033 as yet unmatched pairs. 40101 records in RAM. INFO 2026-06-08 08:49:45 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:14,316,583 INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 786853 as yet unmatched pairs. 38916 records in RAM. INFO 2026-06-08 08:49:47 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:17,275,814 INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 784719 as yet unmatched pairs. 36782 records in RAM. INFO 2026-06-08 08:49:48 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:39,394,265 INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 783508 as yet unmatched pairs. 35564 records in RAM. INFO 2026-06-08 08:49:50 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:55,475,450 INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 781975 as yet unmatched pairs. 34021 records in RAM. INFO 2026-06-08 08:49:51 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:70,067,067 INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 780349 as yet unmatched pairs. 32386 records in RAM. INFO 2026-06-08 08:49:53 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:76,631,868 INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 779254 as yet unmatched pairs. 31290 records in RAM. INFO 2026-06-08 08:49:54 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:83,539,743 INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 777966 as yet unmatched pairs. 30002 records in RAM. INFO 2026-06-08 08:49:56 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:97,006,209 INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 776390 as yet unmatched pairs. 28424 records in RAM. INFO 2026-06-08 08:49:57 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:119,509,152 INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 775207 as yet unmatched pairs. 27240 records in RAM. INFO 2026-06-08 08:49:59 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:133,089,089 INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 773329 as yet unmatched pairs. 25361 records in RAM. INFO 2026-06-08 08:50:00 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:138,465,865 INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 771968 as yet unmatched pairs. 24000 records in RAM. INFO 2026-06-08 08:50:02 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:140,496,980 INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 770181 as yet unmatched pairs. 22188 records in RAM. INFO 2026-06-08 08:50:03 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:141,370,839 INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 768519 as yet unmatched pairs. 20526 records in RAM. INFO 2026-06-08 08:50:04 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:143,399,776 INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 766941 as yet unmatched pairs. 18948 records in RAM. INFO 2026-06-08 08:50:06 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr5:150,115,860 INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 765730 as yet unmatched pairs. 17736 records in RAM. INFO 2026-06-08 08:50:08 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,085 INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 765833 as yet unmatched pairs. 17837 records in RAM. INFO 2026-06-08 08:50:09 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,117 INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 770481 as yet unmatched pairs. 22485 records in RAM. INFO 2026-06-08 08:50:10 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:150,648,621 INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 760962 as yet unmatched pairs. 12965 records in RAM. INFO 2026-06-08 08:50:12 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:151,663,516 INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 759797 as yet unmatched pairs. 11799 records in RAM. INFO 2026-06-08 08:50:14 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:160,255,688 INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 757015 as yet unmatched pairs. 9014 records in RAM. INFO 2026-06-08 08:50:15 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:171,405,353 INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 756305 as yet unmatched pairs. 8302 records in RAM. INFO 2026-06-08 08:50:16 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:176,878,182 INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 753755 as yet unmatched pairs. 5751 records in RAM. INFO 2026-06-08 08:50:18 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:178,210,640 INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 752269 as yet unmatched pairs. 4265 records in RAM. INFO 2026-06-08 08:50:19 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:179,823,012 INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 752721 as yet unmatched pairs. 4717 records in RAM. INFO 2026-06-08 08:50:21 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:181,236,945 INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 748810 as yet unmatched pairs. 804 records in RAM. INFO 2026-06-08 08:50:22 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr6:6,248,329 INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 747116 as yet unmatched pairs. 43511 records in RAM. INFO 2026-06-08 08:50:24 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr6:13,305,107 INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 745177 as yet unmatched pairs. 41569 records in RAM. INFO 2026-06-08 08:50:25 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr6:26,197,152 INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 743466 as yet unmatched pairs. 39857 records in RAM. INFO 2026-06-08 08:50:27 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr6:30,008,655 INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 742112 as yet unmatched pairs. 38502 records in RAM. INFO 2026-06-08 08:50:28 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr6:31,268,914 INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 740445 as yet unmatched pairs. 36835 records in RAM. INFO 2026-06-08 08:50:30 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:31,640,799 INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 738949 as yet unmatched pairs. 35339 records in RAM. INFO 2026-06-08 08:50:31 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:31,862,025 INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 737470 as yet unmatched pairs. 33860 records in RAM. INFO 2026-06-08 08:50:32 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr6:31,993,135 INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 738220 as yet unmatched pairs. 34610 records in RAM. INFO 2026-06-08 08:50:33 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:32,002,402 INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 741194 as yet unmatched pairs. 37584 records in RAM. INFO 2026-06-08 08:50:35 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:32,028,727 INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 738260 as yet unmatched pairs. 34650 records in RAM. INFO 2026-06-08 08:50:36 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:32,056,761 INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 733664 as yet unmatched pairs. 30054 records in RAM. INFO 2026-06-08 08:50:38 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:32,199,044 INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 731322 as yet unmatched pairs. 27712 records in RAM. INFO 2026-06-08 08:50:39 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr6:33,276,172 INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 729950 as yet unmatched pairs. 26340 records in RAM. INFO 2026-06-08 08:50:41 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:34,417,474 INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 728297 as yet unmatched pairs. 24687 records in RAM. INFO 2026-06-08 08:50:42 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:37,891,239 INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 726368 as yet unmatched pairs. 22758 records in RAM. INFO 2026-06-08 08:50:44 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:43,179,123 INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 724607 as yet unmatched pairs. 20994 records in RAM. INFO 2026-06-08 08:50:45 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:47,609,227 INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 722959 as yet unmatched pairs. 19342 records in RAM. INFO 2026-06-08 08:50:46 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:57,090,816 INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 721815 as yet unmatched pairs. 18197 records in RAM. INFO 2026-06-08 08:50:48 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:75,308,844 INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 720202 as yet unmatched pairs. 16584 records in RAM. INFO 2026-06-08 08:50:49 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:89,623,998 INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 718468 as yet unmatched pairs. 14849 records in RAM. INFO 2026-06-08 08:50:51 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:109,382,213 INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 717387 as yet unmatched pairs. 13764 records in RAM. INFO 2026-06-08 08:50:52 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:116,435,929 INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 715399 as yet unmatched pairs. 11773 records in RAM. INFO 2026-06-08 08:50:54 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:130,869,724 INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 714089 as yet unmatched pairs. 10462 records in RAM. INFO 2026-06-08 08:50:55 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:138,432,524 INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 712264 as yet unmatched pairs. 8629 records in RAM. INFO 2026-06-08 08:50:56 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:149,736,610 INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 710843 as yet unmatched pairs. 7205 records in RAM. INFO 2026-06-08 08:50:58 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:151,353,374 INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 709772 as yet unmatched pairs. 6134 records in RAM. INFO 2026-06-08 08:50:59 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:158,636,787 INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 708088 as yet unmatched pairs. 4444 records in RAM. INFO 2026-06-08 08:51:01 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:159,797,462 INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 706243 as yet unmatched pairs. 2598 records in RAM. INFO 2026-06-08 08:51:02 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:169,225,289 INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 704816 as yet unmatched pairs. 1166 records in RAM. INFO 2026-06-08 08:51:04 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr7:1,478,761 INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 702657 as yet unmatched pairs. 49695 records in RAM. INFO 2026-06-08 08:51:05 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr7:5,332,706 INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 700825 as yet unmatched pairs. 47863 records in RAM. INFO 2026-06-08 08:51:07 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,004 INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 705045 as yet unmatched pairs. 52075 records in RAM. INFO 2026-06-08 08:51:09 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,593 INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 703541 as yet unmatched pairs. 50570 records in RAM. INFO 2026-06-08 08:51:10 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr7:5,741,499 INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 695288 as yet unmatched pairs. 42315 records in RAM. INFO 2026-06-08 08:51:12 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr7:22,822,680 INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 693769 as yet unmatched pairs. 40793 records in RAM. INFO 2026-06-08 08:51:13 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr7:30,922,104 INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 694389 as yet unmatched pairs. 41404 records in RAM. INFO 2026-06-08 08:51:14 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr7:44,044,743 INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 690657 as yet unmatched pairs. 37671 records in RAM. INFO 2026-06-08 08:51:16 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:44,799,761 INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 690519 as yet unmatched pairs. 37532 records in RAM. INFO 2026-06-08 08:51:18 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr7:56,061,767 INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 687314 as yet unmatched pairs. 34324 records in RAM. INFO 2026-06-08 08:51:20 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,192 INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 686049 as yet unmatched pairs. 33058 records in RAM. INFO 2026-06-08 08:51:21 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr7:74,753,975 INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 684459 as yet unmatched pairs. 31464 records in RAM. INFO 2026-06-08 08:51:23 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,924 INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 687796 as yet unmatched pairs. 34800 records in RAM. INFO 2026-06-08 08:51:24 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr7:77,696,780 INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 681487 as yet unmatched pairs. 28491 records in RAM. INFO 2026-06-08 08:51:26 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:93,219,338 INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 680167 as yet unmatched pairs. 27168 records in RAM. INFO 2026-06-08 08:51:28 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:94,410,275 INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 680536 as yet unmatched pairs. 27535 records in RAM. INFO 2026-06-08 08:51:29 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:94,422,964 INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 679310 as yet unmatched pairs. 26304 records in RAM. INFO 2026-06-08 08:51:31 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:98,233,796 INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 675038 as yet unmatched pairs. 22023 records in RAM. INFO 2026-06-08 08:51:32 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:100,352,416 INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 674272 as yet unmatched pairs. 21257 records in RAM. INFO 2026-06-08 08:51:34 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:100,955,783 INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 671805 as yet unmatched pairs. 18790 records in RAM. INFO 2026-06-08 08:51:35 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,014 INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 671388 as yet unmatched pairs. 18373 records in RAM. INFO 2026-06-08 08:51:36 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,142 INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 671715 as yet unmatched pairs. 18700 records in RAM. INFO 2026-06-08 08:51:37 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,959 INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 670629 as yet unmatched pairs. 17614 records in RAM. INFO 2026-06-08 08:51:38 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,322 INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 672741 as yet unmatched pairs. 19725 records in RAM. INFO 2026-06-08 08:51:39 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 0s. Last read position: chr7:101,004,241 INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 669503 as yet unmatched pairs. 16487 records in RAM. INFO 2026-06-08 08:51:41 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:102,595,730 INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 668395 as yet unmatched pairs. 15377 records in RAM. INFO 2026-06-08 08:51:42 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:107,952,115 INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 667477 as yet unmatched pairs. 14456 records in RAM. INFO 2026-06-08 08:51:44 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:124,863,396 INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 665323 as yet unmatched pairs. 12299 records in RAM. INFO 2026-06-08 08:51:45 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:128,841,233 INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 664079 as yet unmatched pairs. 11054 records in RAM. INFO 2026-06-08 08:51:47 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:133,034,916 INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 661966 as yet unmatched pairs. 8939 records in RAM. INFO 2026-06-08 08:51:48 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:137,882,411 INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 661131 as yet unmatched pairs. 8101 records in RAM. INFO 2026-06-08 08:51:50 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr7:143,264,990 INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 659759 as yet unmatched pairs. 6729 records in RAM. INFO 2026-06-08 08:51:51 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:149,003,802 INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 657771 as yet unmatched pairs. 4741 records in RAM. INFO 2026-06-08 08:51:53 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:150,803,737 INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 655853 as yet unmatched pairs. 2823 records in RAM. INFO 2026-06-08 08:51:54 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:154,968,817 INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 653721 as yet unmatched pairs. 691 records in RAM. INFO 2026-06-08 08:51:56 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr8:9,615,646 INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 652260 as yet unmatched pairs. 33930 records in RAM. INFO 2026-06-08 08:51:57 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr8:18,872,199 INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 650678 as yet unmatched pairs. 32348 records in RAM. INFO 2026-06-08 08:51:59 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr8:23,116,734 INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 649200 as yet unmatched pairs. 30861 records in RAM. INFO 2026-06-08 08:52:00 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr8:28,793,796 INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 647462 as yet unmatched pairs. 29123 records in RAM. INFO 2026-06-08 08:52:01 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr8:37,841,870 INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 645812 as yet unmatched pairs. 27460 records in RAM. INFO 2026-06-08 08:52:03 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr8:38,787,754 INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 645848 as yet unmatched pairs. 27490 records in RAM. INFO 2026-06-08 08:52:05 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr8:41,940,992 INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 642714 as yet unmatched pairs. 24356 records in RAM. INFO 2026-06-08 08:52:06 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr8:51,898,959 INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 640691 as yet unmatched pairs. 22331 records in RAM. INFO 2026-06-08 08:53:14 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 67s. Last read position: chr8:69,621,126 INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 639482 as yet unmatched pairs. 21121 records in RAM. INFO 2026-06-08 08:53:16 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr8:86,551,177 INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 637974 as yet unmatched pairs. 19611 records in RAM. INFO 2026-06-08 08:53:17 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr8:98,045,354 INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 636265 as yet unmatched pairs. 17901 records in RAM. INFO 2026-06-08 08:53:19 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr8:103,345,439 INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 634736 as yet unmatched pairs. 16370 records in RAM. INFO 2026-06-08 08:53:20 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr8:120,280,973 INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 634167 as yet unmatched pairs. 15791 records in RAM. INFO 2026-06-08 08:53:22 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,848 INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 632732 as yet unmatched pairs. 14354 records in RAM. INFO 2026-06-08 08:53:23 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,296,642 INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 629779 as yet unmatched pairs. 11382 records in RAM. INFO 2026-06-08 08:53:25 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,402 INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 627907 as yet unmatched pairs. 9510 records in RAM. INFO 2026-06-08 08:53:26 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,514 INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 627377 as yet unmatched pairs. 8980 records in RAM. INFO 2026-06-08 08:53:27 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,308 INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 626589 as yet unmatched pairs. 8192 records in RAM. INFO 2026-06-08 08:53:28 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 0s. Last read position: chr8:143,871,583 INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 626082 as yet unmatched pairs. 7685 records in RAM. INFO 2026-06-08 08:53:29 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,557 INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 623669 as yet unmatched pairs. 5272 records in RAM. INFO 2026-06-08 08:53:31 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr8:144,054,813 INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 621001 as yet unmatched pairs. 2603 records in RAM. INFO 2026-06-08 08:53:32 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr8:144,510,486 INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 619072 as yet unmatched pairs. 674 records in RAM. INFO 2026-06-08 08:53:34 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr9:6,835,498 INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 617129 as yet unmatched pairs. 40744 records in RAM. INFO 2026-06-08 08:53:36 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr9:19,378,847 INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 616899 as yet unmatched pairs. 40510 records in RAM. INFO 2026-06-08 08:53:37 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr9:35,056,943 INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 614195 as yet unmatched pairs. 37805 records in RAM. INFO 2026-06-08 08:53:39 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr9:35,697,754 INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 612521 as yet unmatched pairs. 36131 records in RAM. INFO 2026-06-08 08:53:40 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr9:35,829,439 INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 610437 as yet unmatched pairs. 34047 records in RAM. INFO 2026-06-08 08:53:42 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr9:68,940,651 INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 609162 as yet unmatched pairs. 32765 records in RAM. INFO 2026-06-08 08:53:43 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr9:76,708,408 INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 608356 as yet unmatched pairs. 31958 records in RAM. INFO 2026-06-08 08:53:45 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 2s. Last read position: chr9:86,946,610 INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 606332 as yet unmatched pairs. 29934 records in RAM. INFO 2026-06-08 08:53:47 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr9:93,317,489 INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 604633 as yet unmatched pairs. 28233 records in RAM. INFO 2026-06-08 08:53:48 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr9:98,986,092 INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 604712 as yet unmatched pairs. 28307 records in RAM. INFO 2026-06-08 08:53:50 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr9:105,522,855 INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 601276 as yet unmatched pairs. 24870 records in RAM. INFO 2026-06-08 08:53:51 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr9:111,926,480 INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 599806 as yet unmatched pairs. 23398 records in RAM. INFO 2026-06-08 08:53:53 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr9:115,040,960 INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 598870 as yet unmatched pairs. 22462 records in RAM. INFO 2026-06-08 08:53:54 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr9:120,869,898 INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 596421 as yet unmatched pairs. 20013 records in RAM. INFO 2026-06-08 08:53:55 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr9:122,911,248 INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 594797 as yet unmatched pairs. 18389 records in RAM. INFO 2026-06-08 08:53:57 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr9:127,445,127 INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 593170 as yet unmatched pairs. 16760 records in RAM. INFO 2026-06-08 08:53:59 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr9:128,258,083 INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 591369 as yet unmatched pairs. 14959 records in RAM. INFO 2026-06-08 08:54:00 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr9:129,012,255 INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 589812 as yet unmatched pairs. 13402 records in RAM. INFO 2026-06-08 08:54:01 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr9:130,874,897 INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 588904 as yet unmatched pairs. 12491 records in RAM. INFO 2026-06-08 08:54:03 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr9:131,643,282 INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 586465 as yet unmatched pairs. 10052 records in RAM. INFO 2026-06-08 08:54:04 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:134,712,090 INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 584858 as yet unmatched pairs. 8443 records in RAM. INFO 2026-06-08 08:54:06 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr9:134,824,707 INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 582816 as yet unmatched pairs. 6400 records in RAM. INFO 2026-06-08 08:54:07 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr9:136,509,815 INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 580760 as yet unmatched pairs. 4343 records in RAM. INFO 2026-06-08 08:54:09 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:136,995,238 INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 578537 as yet unmatched pairs. 2120 records in RAM. INFO 2026-06-08 08:54:10 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr9:137,743,977 INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 576693 as yet unmatched pairs. 274 records in RAM. INFO 2026-06-08 08:54:12 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr10:7,576,959 INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 575454 as yet unmatched pairs. 32730 records in RAM. INFO 2026-06-08 08:54:13 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr10:17,866,563 INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 573481 as yet unmatched pairs. 30734 records in RAM. INFO 2026-06-08 08:54:15 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr10:29,486,472 INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 572101 as yet unmatched pairs. 29354 records in RAM. INFO 2026-06-08 08:54:17 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr10:32,019,949 INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 572321 as yet unmatched pairs. 29574 records in RAM. INFO 2026-06-08 08:54:18 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr10:33,330,872 INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 569749 as yet unmatched pairs. 27002 records in RAM. INFO 2026-06-08 08:54:19 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,552 INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 568248 as yet unmatched pairs. 25498 records in RAM. INFO 2026-06-08 08:54:21 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr10:58,796,360 INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 566813 as yet unmatched pairs. 24059 records in RAM. INFO 2026-06-08 08:54:22 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr10:69,382,558 INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 565292 as yet unmatched pairs. 22538 records in RAM. INFO 2026-06-08 08:54:24 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr10:73,545,573 INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 563331 as yet unmatched pairs. 20576 records in RAM. INFO 2026-06-08 08:54:25 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr10:76,915,020 INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 562290 as yet unmatched pairs. 19535 records in RAM. INFO 2026-06-08 08:54:26 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr10:80,170,884 INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 561277 as yet unmatched pairs. 18516 records in RAM. INFO 2026-06-08 08:54:28 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr10:88,938,168 INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 560941 as yet unmatched pairs. 18180 records in RAM. INFO 2026-06-08 08:54:29 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr10:94,403,567 INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 557454 as yet unmatched pairs. 14689 records in RAM. INFO 2026-06-08 08:54:31 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr10:97,334,305 INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 555962 as yet unmatched pairs. 13195 records in RAM. INFO 2026-06-08 08:54:32 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr10:101,799,221 INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 554227 as yet unmatched pairs. 11458 records in RAM. INFO 2026-06-08 08:54:34 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr10:103,603,583 INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 552624 as yet unmatched pairs. 9843 records in RAM. INFO 2026-06-08 08:54:35 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr10:118,335,114 INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 550952 as yet unmatched pairs. 8170 records in RAM. INFO 2026-06-08 08:54:36 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr10:122,085,612 INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 549562 as yet unmatched pairs. 6780 records in RAM. INFO 2026-06-08 08:54:38 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr10:122,582,752 INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 549817 as yet unmatched pairs. 7035 records in RAM. INFO 2026-06-08 08:54:39 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr10:122,595,406 INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 551167 as yet unmatched pairs. 8385 records in RAM. INFO 2026-06-08 08:54:41 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr10:122,602,100 INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 549054 as yet unmatched pairs. 6272 records in RAM. INFO 2026-06-08 08:54:42 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr10:122,610,104 INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 546508 as yet unmatched pairs. 3726 records in RAM. INFO 2026-06-08 08:54:43 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:122,629,974 INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 545458 as yet unmatched pairs. 2676 records in RAM. INFO 2026-06-08 08:54:44 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr10:128,107,789 INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 543603 as yet unmatched pairs. 817 records in RAM. INFO 2026-06-08 08:54:46 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr11:314,337 INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 543342 as yet unmatched pairs. 57959 records in RAM. INFO 2026-06-08 08:54:48 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr11:500,551 INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 540713 as yet unmatched pairs. 55328 records in RAM. INFO 2026-06-08 08:54:49 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr11:985,482 INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 538634 as yet unmatched pairs. 53249 records in RAM. INFO 2026-06-08 08:54:51 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr11:1,261,458 INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 536974 as yet unmatched pairs. 51589 records in RAM. INFO 2026-06-08 08:54:52 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr11:3,107,256 INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 535114 as yet unmatched pairs. 49729 records in RAM. INFO 2026-06-08 08:54:54 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr11:6,619,217 INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 533359 as yet unmatched pairs. 47974 records in RAM. INFO 2026-06-08 08:54:55 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr11:9,910,566 INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 531790 as yet unmatched pairs. 46403 records in RAM. INFO 2026-06-08 08:54:57 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr11:13,963,132 INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 530640 as yet unmatched pairs. 45247 records in RAM. INFO 2026-06-08 08:54:58 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr11:27,498,570 INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 528791 as yet unmatched pairs. 43398 records in RAM. INFO 2026-06-08 08:54:59 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr11:43,750,937 INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 527647 as yet unmatched pairs. 42250 records in RAM. INFO 2026-06-08 08:55:01 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr11:46,682,063 INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 525616 as yet unmatched pairs. 40217 records in RAM. INFO 2026-06-08 08:55:02 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr11:57,327,864 INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 523535 as yet unmatched pairs. 38136 records in RAM. INFO 2026-06-08 08:55:04 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr11:60,302,676 INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 522129 as yet unmatched pairs. 36730 records in RAM. INFO 2026-06-08 08:55:05 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr11:62,517,944 INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 521089 as yet unmatched pairs. 35685 records in RAM. INFO 2026-06-08 08:55:07 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr11:62,526,142 INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 519951 as yet unmatched pairs. 34547 records in RAM. INFO 2026-06-08 08:55:08 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr11:62,533,448 INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 518546 as yet unmatched pairs. 33136 records in RAM. INFO 2026-06-08 08:55:09 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr11:62,792,460 INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 516614 as yet unmatched pairs. 31203 records in RAM. INFO 2026-06-08 08:55:11 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr11:64,316,840 INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 514620 as yet unmatched pairs. 29209 records in RAM. INFO 2026-06-08 08:55:12 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr11:65,188,582 INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 512631 as yet unmatched pairs. 27216 records in RAM. INFO 2026-06-08 08:55:14 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:65,613,028 INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 510858 as yet unmatched pairs. 25399 records in RAM. INFO 2026-06-08 08:55:15 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr11:66,052,478 INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 508964 as yet unmatched pairs. 23505 records in RAM. INFO 2026-06-08 08:55:17 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:67,279,258 INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 507425 as yet unmatched pairs. 21966 records in RAM. INFO 2026-06-08 08:55:18 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:68,406,757 INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 505193 as yet unmatched pairs. 19734 records in RAM. INFO 2026-06-08 08:55:19 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:72,006,122 INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 503653 as yet unmatched pairs. 18192 records in RAM. INFO 2026-06-08 08:55:21 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:73,309,067 INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 501799 as yet unmatched pairs. 16338 records in RAM. INFO 2026-06-08 08:55:23 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:74,718,829 INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 502894 as yet unmatched pairs. 17433 records in RAM. INFO 2026-06-08 08:55:24 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:77,067,031 INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 498181 as yet unmatched pairs. 12714 records in RAM. INFO 2026-06-08 08:55:25 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:93,683,583 INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 496632 as yet unmatched pairs. 11161 records in RAM. INFO 2026-06-08 08:55:27 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:103,181,826 INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 495055 as yet unmatched pairs. 9584 records in RAM. INFO 2026-06-08 08:55:28 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:114,250,672 INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 493650 as yet unmatched pairs. 8178 records in RAM. INFO 2026-06-08 08:55:30 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:117,295,212 INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 492135 as yet unmatched pairs. 6663 records in RAM. INFO 2026-06-08 08:55:31 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:118,901,835 INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 490566 as yet unmatched pairs. 5093 records in RAM. INFO 2026-06-08 08:55:32 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:120,478,239 INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 488922 as yet unmatched pairs. 3449 records in RAM. INFO 2026-06-08 08:55:34 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:126,018,347 INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 487402 as yet unmatched pairs. 1929 records in RAM. INFO 2026-06-08 08:55:36 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:133,926,930 INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 486030 as yet unmatched pairs. 553 records in RAM. INFO 2026-06-08 08:55:37 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr12:3,019,120 INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 484067 as yet unmatched pairs. 49584 records in RAM. INFO 2026-06-08 08:55:39 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr12:6,019,139 INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 483622 as yet unmatched pairs. 49139 records in RAM. INFO 2026-06-08 08:55:41 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr12:6,330,656 INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 480844 as yet unmatched pairs. 46360 records in RAM. INFO 2026-06-08 08:55:42 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr12:6,869,738 INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 479172 as yet unmatched pairs. 44688 records in RAM. INFO 2026-06-08 08:55:43 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr12:7,080,819 INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 478913 as yet unmatched pairs. 44429 records in RAM. INFO 2026-06-08 08:55:45 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr12:7,496,861 INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 476806 as yet unmatched pairs. 42322 records in RAM. INFO 2026-06-08 08:55:46 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr12:9,091,350 INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 476621 as yet unmatched pairs. 42137 records in RAM. INFO 2026-06-08 08:55:48 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr12:11,869,427 INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 473161 as yet unmatched pairs. 38677 records in RAM. INFO 2026-06-08 08:55:49 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr12:21,654,544 INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 471652 as yet unmatched pairs. 37168 records in RAM. INFO 2026-06-08 08:55:51 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr12:38,730,294 INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 469947 as yet unmatched pairs. 35458 records in RAM. INFO 2026-06-08 08:55:52 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr12:48,768,678 INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 468569 as yet unmatched pairs. 34079 records in RAM. INFO 2026-06-08 08:55:54 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr12:49,129,281 INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 467314 as yet unmatched pairs. 32824 records in RAM. INFO 2026-06-08 08:55:55 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr12:50,925,244 INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 465889 as yet unmatched pairs. 31397 records in RAM. INFO 2026-06-08 08:55:57 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr12:53,059,851 INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 464360 as yet unmatched pairs. 29867 records in RAM. INFO 2026-06-08 08:55:58 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr12:54,252,219 INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 462486 as yet unmatched pairs. 27993 records in RAM. INFO 2026-06-08 08:56:00 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr12:55,697,799 INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 461495 as yet unmatched pairs. 27002 records in RAM. INFO 2026-06-08 08:56:01 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr12:56,159,665 INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 461825 as yet unmatched pairs. 27332 records in RAM. INFO 2026-06-08 08:56:03 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr12:56,642,726 INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 458151 as yet unmatched pairs. 23656 records in RAM. INFO 2026-06-08 08:56:05 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr12:57,102,879 INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 457393 as yet unmatched pairs. 22898 records in RAM. INFO 2026-06-08 08:56:07 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr12:57,181,164 INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 455161 as yet unmatched pairs. 20665 records in RAM. INFO 2026-06-08 08:56:08 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr12:57,500,402 INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 453141 as yet unmatched pairs. 18645 records in RAM. INFO 2026-06-08 08:56:10 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr12:64,439,300 INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 451462 as yet unmatched pairs. 16964 records in RAM. INFO 2026-06-08 08:56:12 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr12:76,029,991 INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 449919 as yet unmatched pairs. 15413 records in RAM. INFO 2026-06-08 08:56:13 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr12:91,178,373 INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 449532 as yet unmatched pairs. 15008 records in RAM. INFO 2026-06-08 08:56:15 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr12:102,396,374 INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 447231 as yet unmatched pairs. 12707 records in RAM. INFO 2026-06-08 08:56:17 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:108,592,010 INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 445645 as yet unmatched pairs. 11121 records in RAM. INFO 2026-06-08 08:56:18 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr12:111,510,491 INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 444175 as yet unmatched pairs. 9650 records in RAM. INFO 2026-06-08 08:56:20 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:113,434,121 INFO 2026-06-08 08:56:20 MarkDuplicates Tracking 442352 as yet unmatched pairs. 7826 records in RAM. INFO 2026-06-08 08:56:21 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr12:120,446,523 INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 440619 as yet unmatched pairs. 6093 records in RAM. INFO 2026-06-08 08:56:23 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:122,319,254 INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 438935 as yet unmatched pairs. 4408 records in RAM. INFO 2026-06-08 08:56:24 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr12:124,372,027 INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 437175 as yet unmatched pairs. 2646 records in RAM. INFO 2026-06-08 08:56:25 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr12:132,690,290 INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 435253 as yet unmatched pairs. 720 records in RAM. INFO 2026-06-08 08:56:27 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr13:24,224,328 INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 433651 as yet unmatched pairs. 16252 records in RAM. INFO 2026-06-08 08:56:28 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr13:33,349,175 INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 432091 as yet unmatched pairs. 14690 records in RAM. INFO 2026-06-08 08:56:30 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr13:45,337,291 INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 431331 as yet unmatched pairs. 13926 records in RAM. INFO 2026-06-08 08:56:32 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr13:52,666,814 INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 428896 as yet unmatched pairs. 11488 records in RAM. INFO 2026-06-08 08:56:33 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr13:53,050,326 INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 431875 as yet unmatched pairs. 14467 records in RAM. INFO 2026-06-08 08:56:34 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr13:93,227,454 INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 425960 as yet unmatched pairs. 8551 records in RAM. INFO 2026-06-08 08:56:36 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr13:109,785,059 INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 424422 as yet unmatched pairs. 7010 records in RAM. INFO 2026-06-08 08:56:37 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr13:110,201,495 INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 423836 as yet unmatched pairs. 6424 records in RAM. INFO 2026-06-08 08:56:39 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr13:110,445,881 INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 422050 as yet unmatched pairs. 4637 records in RAM. INFO 2026-06-08 08:56:40 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr13:110,511,941 INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 419809 as yet unmatched pairs. 2390 records in RAM. INFO 2026-06-08 08:56:43 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr14:20,357,704 INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 417416 as yet unmatched pairs. 32357 records in RAM. INFO 2026-06-08 08:56:44 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr14:21,525,109 INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 415671 as yet unmatched pairs. 30611 records in RAM. INFO 2026-06-08 08:56:46 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr14:23,476,362 INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 413925 as yet unmatched pairs. 28865 records in RAM. INFO 2026-06-08 08:56:47 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr14:24,416,985 INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 412342 as yet unmatched pairs. 27282 records in RAM. INFO 2026-06-08 08:56:49 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr14:38,255,553 INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 410733 as yet unmatched pairs. 25672 records in RAM. INFO 2026-06-08 08:56:50 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr14:52,268,566 INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 409193 as yet unmatched pairs. 24129 records in RAM. INFO 2026-06-08 08:56:52 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr14:60,975,559 INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 407609 as yet unmatched pairs. 22545 records in RAM. INFO 2026-06-08 08:56:53 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr14:67,562,215 INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 406089 as yet unmatched pairs. 21023 records in RAM. INFO 2026-06-08 08:56:54 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr14:69,054,338 INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 404276 as yet unmatched pairs. 19210 records in RAM. INFO 2026-06-08 08:56:56 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr14:74,286,672 INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 402442 as yet unmatched pairs. 17372 records in RAM. INFO 2026-06-08 08:56:58 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr14:75,280,992 INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 402446 as yet unmatched pairs. 17375 records in RAM. INFO 2026-06-08 08:56:59 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr14:90,312,415 INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 399154 as yet unmatched pairs. 14083 records in RAM. INFO 2026-06-08 08:57:00 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr14:94,115,881 INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 397951 as yet unmatched pairs. 12879 records in RAM. INFO 2026-06-08 08:57:02 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr14:102,010,062 INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 395874 as yet unmatched pairs. 10798 records in RAM. INFO 2026-06-08 08:57:04 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr14:103,467,074 INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 393912 as yet unmatched pairs. 8835 records in RAM. INFO 2026-06-08 08:57:05 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr14:104,939,898 INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 392213 as yet unmatched pairs. 7136 records in RAM. INFO 2026-06-08 08:57:06 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr14:104,950,012 INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 392452 as yet unmatched pairs. 7375 records in RAM. INFO 2026-06-08 08:57:08 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,287 INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 390414 as yet unmatched pairs. 5335 records in RAM. INFO 2026-06-08 08:57:10 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 2s. Last read position: chr14:105,588,260 INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 394618 as yet unmatched pairs. 9538 records in RAM. INFO 2026-06-08 08:57:12 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,401 INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 389870 as yet unmatched pairs. 4790 records in RAM. INFO 2026-06-08 08:57:14 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,587 INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 385953 as yet unmatched pairs. 867 records in RAM. INFO 2026-06-08 08:57:16 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr15:28,234,124 INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 384140 as yet unmatched pairs. 33202 records in RAM. INFO 2026-06-08 08:57:17 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr15:32,730,841 INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 386841 as yet unmatched pairs. 35901 records in RAM. INFO 2026-06-08 08:57:19 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr15:32,731,944 INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 388300 as yet unmatched pairs. 37360 records in RAM. INFO 2026-06-08 08:57:20 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr15:32,733,882 INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 383073 as yet unmatched pairs. 32132 records in RAM. INFO 2026-06-08 08:57:22 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr15:39,587,349 INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 380340 as yet unmatched pairs. 29399 records in RAM. INFO 2026-06-08 08:57:23 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr15:40,415,401 INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 377067 as yet unmatched pairs. 26125 records in RAM. INFO 2026-06-08 08:57:25 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr15:42,439,520 INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 375418 as yet unmatched pairs. 24464 records in RAM. INFO 2026-06-08 08:57:26 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr15:43,763,130 INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 374413 as yet unmatched pairs. 23459 records in RAM. INFO 2026-06-08 08:57:28 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr15:48,428,445 INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 372930 as yet unmatched pairs. 21974 records in RAM. INFO 2026-06-08 08:57:29 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr15:52,353,615 INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 370932 as yet unmatched pairs. 19971 records in RAM. INFO 2026-06-08 08:57:31 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr15:61,890,300 INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 369576 as yet unmatched pairs. 18614 records in RAM. INFO 2026-06-08 08:57:32 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr15:63,656,311 INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 367736 as yet unmatched pairs. 16774 records in RAM. INFO 2026-06-08 08:57:34 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr15:66,485,106 INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 366285 as yet unmatched pairs. 15322 records in RAM. INFO 2026-06-08 08:57:35 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr15:72,351,179 INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 364950 as yet unmatched pairs. 13981 records in RAM. INFO 2026-06-08 08:57:37 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr15:74,838,179 INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 362848 as yet unmatched pairs. 11879 records in RAM. INFO 2026-06-08 08:57:38 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr15:75,690,138 INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 361249 as yet unmatched pairs. 10280 records in RAM. INFO 2026-06-08 08:57:40 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr15:81,300,066 INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 359299 as yet unmatched pairs. 8330 records in RAM. INFO 2026-06-08 08:57:41 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr15:88,467,166 INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 358141 as yet unmatched pairs. 7150 records in RAM. INFO 2026-06-08 08:57:43 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr15:90,482,045 INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 356846 as yet unmatched pairs. 5855 records in RAM. INFO 2026-06-08 08:57:44 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr15:98,957,288 INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 355051 as yet unmatched pairs. 4059 records in RAM. INFO 2026-06-08 08:57:46 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr15:99,131,296 INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 354584 as yet unmatched pairs. 3592 records in RAM. INFO 2026-06-08 08:57:47 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr15:101,370,415 INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 351174 as yet unmatched pairs. 179 records in RAM. INFO 2026-06-08 08:57:49 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr16:689,442 INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 349285 as yet unmatched pairs. 50664 records in RAM. INFO 2026-06-08 08:57:50 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr16:1,519,933 INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 347123 as yet unmatched pairs. 48501 records in RAM. INFO 2026-06-08 08:57:52 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr16:2,102,177 INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 344999 as yet unmatched pairs. 46376 records in RAM. INFO 2026-06-08 08:57:53 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr16:2,528,488 INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 343226 as yet unmatched pairs. 44603 records in RAM. INFO 2026-06-08 08:57:55 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr16:3,029,295 INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 341428 as yet unmatched pairs. 42805 records in RAM. INFO 2026-06-08 08:57:56 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr16:4,812,135 INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 339401 as yet unmatched pairs. 40778 records in RAM. INFO 2026-06-08 08:57:57 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr16:14,249,033 INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 338158 as yet unmatched pairs. 39534 records in RAM. INFO 2026-06-08 08:57:59 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr16:14,997,773 INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 337469 as yet unmatched pairs. 38845 records in RAM. INFO 2026-06-08 08:58:00 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr16:15,715,012 INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 338139 as yet unmatched pairs. 39514 records in RAM. INFO 2026-06-08 08:58:02 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr16:15,721,029 INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 337493 as yet unmatched pairs. 38868 records in RAM. INFO 2026-06-08 08:58:03 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr16:15,738,599 INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 334087 as yet unmatched pairs. 35458 records in RAM. INFO 2026-06-08 08:58:05 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr16:15,753,466 INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 334921 as yet unmatched pairs. 36291 records in RAM. INFO 2026-06-08 08:58:06 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr16:15,786,648 INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 332756 as yet unmatched pairs. 34126 records in RAM. INFO 2026-06-08 08:58:08 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr16:16,319,454 INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 328243 as yet unmatched pairs. 29613 records in RAM. INFO 2026-06-08 08:58:09 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr16:16,392,194 INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 327825 as yet unmatched pairs. 29195 records in RAM. INFO 2026-06-08 08:58:10 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr16:18,384,989 INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 327439 as yet unmatched pairs. 28809 records in RAM. INFO 2026-06-08 08:58:11 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr16:19,504,880 INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 325872 as yet unmatched pairs. 27242 records in RAM. INFO 2026-06-08 08:58:12 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr16:22,256,873 INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 325154 as yet unmatched pairs. 26523 records in RAM. INFO 2026-06-08 08:58:14 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr16:27,362,468 INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 324113 as yet unmatched pairs. 25481 records in RAM. INFO 2026-06-08 08:58:15 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr16:28,866,047 INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 322702 as yet unmatched pairs. 24070 records in RAM. INFO 2026-06-08 08:58:16 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr16:29,814,566 INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 321455 as yet unmatched pairs. 22822 records in RAM. INFO 2026-06-08 08:58:18 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr16:30,223,259 INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 319782 as yet unmatched pairs. 21149 records in RAM. INFO 2026-06-08 08:58:19 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr16:30,753,481 INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 318246 as yet unmatched pairs. 19613 records in RAM. INFO 2026-06-08 08:58:21 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr16:31,476,158 INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 316718 as yet unmatched pairs. 18085 records in RAM. INFO 2026-06-08 08:58:22 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr16:55,479,472 INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 318170 as yet unmatched pairs. 19530 records in RAM. INFO 2026-06-08 08:58:24 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr16:56,625,818 INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 313724 as yet unmatched pairs. 15084 records in RAM. INFO 2026-06-08 08:58:27 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 2s. Last read position: chr16:64,998,849 INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 311996 as yet unmatched pairs. 13344 records in RAM. INFO 2026-06-08 08:58:28 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:67,637,798 INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 309977 as yet unmatched pairs. 11325 records in RAM. INFO 2026-06-08 08:58:30 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr16:69,711,221 INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 308303 as yet unmatched pairs. 9651 records in RAM. INFO 2026-06-08 08:58:31 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:72,787,120 INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 306647 as yet unmatched pairs. 7995 records in RAM. INFO 2026-06-08 08:58:33 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr16:79,599,319 INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 304924 as yet unmatched pairs. 6269 records in RAM. INFO 2026-06-08 08:58:34 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr16:85,665,052 INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 303361 as yet unmatched pairs. 4706 records in RAM. INFO 2026-06-08 08:58:36 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr16:88,715,204 INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 301285 as yet unmatched pairs. 2629 records in RAM. INFO 2026-06-08 08:58:37 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:89,686,726 INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 299545 as yet unmatched pairs. 889 records in RAM. INFO 2026-06-08 08:58:39 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr17:1,467,509 INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 297732 as yet unmatched pairs. 115656 records in RAM. INFO 2026-06-08 08:58:41 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr17:2,058,461 INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 296005 as yet unmatched pairs. 113927 records in RAM. INFO 2026-06-08 08:58:43 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr17:4,558,747 INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 294392 as yet unmatched pairs. 112314 records in RAM. INFO 2026-06-08 08:58:44 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr17:5,420,209 INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 292643 as yet unmatched pairs. 110562 records in RAM. INFO 2026-06-08 08:58:46 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr17:7,347,159 INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 290781 as yet unmatched pairs. 108700 records in RAM. INFO 2026-06-08 08:58:47 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr17:7,580,747 INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 289423 as yet unmatched pairs. 107342 records in RAM. INFO 2026-06-08 08:58:49 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr17:8,377,682 INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 288142 as yet unmatched pairs. 106060 records in RAM. INFO 2026-06-08 08:58:50 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,065 INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 287222 as yet unmatched pairs. 105129 records in RAM. INFO 2026-06-08 08:58:52 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr17:18,253,387 INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 284323 as yet unmatched pairs. 102230 records in RAM. INFO 2026-06-08 08:58:54 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr17:27,645,291 INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 282715 as yet unmatched pairs. 100622 records in RAM. INFO 2026-06-08 08:58:55 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr17:29,502,613 INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 281044 as yet unmatched pairs. 98950 records in RAM. INFO 2026-06-08 08:58:57 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr17:35,103,462 INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 279593 as yet unmatched pairs. 97499 records in RAM. INFO 2026-06-08 08:58:59 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr17:37,981,128 INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 278056 as yet unmatched pairs. 95962 records in RAM. INFO 2026-06-08 08:59:01 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr17:39,525,967 INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 276732 as yet unmatched pairs. 94638 records in RAM. INFO 2026-06-08 08:59:02 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr17:40,020,273 INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 274912 as yet unmatched pairs. 92818 records in RAM. INFO 2026-06-08 08:59:04 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr17:40,662,035 INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 272553 as yet unmatched pairs. 90459 records in RAM. INFO 2026-06-08 08:59:05 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr17:42,331,480 INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 271052 as yet unmatched pairs. 88958 records in RAM. INFO 2026-06-08 08:59:07 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr17:42,854,462 INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 270902 as yet unmatched pairs. 88808 records in RAM. INFO 2026-06-08 08:59:08 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr17:44,349,726 INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 267933 as yet unmatched pairs. 85839 records in RAM. INFO 2026-06-08 08:59:10 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr17:46,330,468 INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 265971 as yet unmatched pairs. 83877 records in RAM. INFO 2026-06-08 08:59:11 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr17:48,576,824 INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 264465 as yet unmatched pairs. 82370 records in RAM. INFO 2026-06-08 08:59:13 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,588 INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 266588 as yet unmatched pairs. 84493 records in RAM. INFO 2026-06-08 08:59:14 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,637 INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 266936 as yet unmatched pairs. 84834 records in RAM. INFO 2026-06-08 08:59:16 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014 INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 298409 as yet unmatched pairs. 116307 records in RAM. INFO 2026-06-08 08:59:17 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,497 INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 293626 as yet unmatched pairs. 111524 records in RAM. INFO 2026-06-08 08:59:19 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,945 INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 300262 as yet unmatched pairs. 118159 records in RAM. INFO 2026-06-08 08:59:21 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,536 INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 283685 as yet unmatched pairs. 101582 records in RAM. INFO 2026-06-08 08:59:23 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,745 INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 286687 as yet unmatched pairs. 104583 records in RAM. INFO 2026-06-08 08:59:24 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,947 INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 289473 as yet unmatched pairs. 107369 records in RAM. INFO 2026-06-08 08:59:26 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,265 INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 278675 as yet unmatched pairs. 96571 records in RAM. INFO 2026-06-08 08:59:27 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,489 INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 281097 as yet unmatched pairs. 98993 records in RAM. INFO 2026-06-08 08:59:29 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,858 INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 287237 as yet unmatched pairs. 105132 records in RAM. INFO 2026-06-08 08:59:31 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,037 INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 284658 as yet unmatched pairs. 102553 records in RAM. INFO 2026-06-08 08:59:33 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,354 INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 292408 as yet unmatched pairs. 110303 records in RAM. INFO 2026-06-08 09:01:40 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 126s. Last read position: chr17:50,190,867 INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 260119 as yet unmatched pairs. 78014 records in RAM. INFO 2026-06-08 09:01:42 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,459 INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 269291 as yet unmatched pairs. 87186 records in RAM. INFO 2026-06-08 09:01:43 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,862 INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 288989 as yet unmatched pairs. 106884 records in RAM. INFO 2026-06-08 09:01:45 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,513 INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 273193 as yet unmatched pairs. 91088 records in RAM. INFO 2026-06-08 09:01:47 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,803 INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 284993 as yet unmatched pairs. 102888 records in RAM. INFO 2026-06-08 09:01:48 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,028 INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 285854 as yet unmatched pairs. 103749 records in RAM. INFO 2026-06-08 09:01:50 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,007 INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 278373 as yet unmatched pairs. 96268 records in RAM. INFO 2026-06-08 09:01:52 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,179 INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 275623 as yet unmatched pairs. 93518 records in RAM. INFO 2026-06-08 09:01:53 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,572 INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 260256 as yet unmatched pairs. 78151 records in RAM. INFO 2026-06-08 09:01:55 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,745 INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 263910 as yet unmatched pairs. 81805 records in RAM. INFO 2026-06-08 09:01:57 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,094 INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 259146 as yet unmatched pairs. 77041 records in RAM. INFO 2026-06-08 09:01:59 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,456 INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 250709 as yet unmatched pairs. 68604 records in RAM. INFO 2026-06-08 09:02:01 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,616 INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 276584 as yet unmatched pairs. 94479 records in RAM. INFO 2026-06-08 09:02:03 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,154 INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 270236 as yet unmatched pairs. 88131 records in RAM. INFO 2026-06-08 09:02:04 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,333 INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 260650 as yet unmatched pairs. 78544 records in RAM. INFO 2026-06-08 09:02:06 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,627 INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 259901 as yet unmatched pairs. 77795 records in RAM. INFO 2026-06-08 09:02:08 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,047 INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 282936 as yet unmatched pairs. 100830 records in RAM. INFO 2026-06-08 09:02:10 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,752 INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 259657 as yet unmatched pairs. 77551 records in RAM. INFO 2026-06-08 09:02:11 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,434 INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 229350 as yet unmatched pairs. 47244 records in RAM. INFO 2026-06-08 09:02:13 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,265 INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 237744 as yet unmatched pairs. 55638 records in RAM. INFO 2026-06-08 09:02:14 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,569 INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 219190 as yet unmatched pairs. 37084 records in RAM. INFO 2026-06-08 09:02:16 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,201,448 INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 207528 as yet unmatched pairs. 25422 records in RAM. INFO 2026-06-08 09:02:18 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr17:57,118,419 INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 201560 as yet unmatched pairs. 19454 records in RAM. INFO 2026-06-08 09:02:19 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,319 INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 200179 as yet unmatched pairs. 18073 records in RAM. INFO 2026-06-08 09:02:21 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr17:63,646,033 INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 197681 as yet unmatched pairs. 15574 records in RAM. INFO 2026-06-08 09:02:22 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr17:64,896,171 INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 196139 as yet unmatched pairs. 14031 records in RAM. INFO 2026-06-08 09:02:25 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 2s. Last read position: chr17:70,175,037 INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 194709 as yet unmatched pairs. 12601 records in RAM. INFO 2026-06-08 09:02:26 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr17:75,589,025 INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 193038 as yet unmatched pairs. 10928 records in RAM. INFO 2026-06-08 09:02:28 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr17:76,094,567 INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 191094 as yet unmatched pairs. 8984 records in RAM. INFO 2026-06-08 09:02:29 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 1s. Last read position: chr17:78,392,509 INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 189422 as yet unmatched pairs. 7312 records in RAM. INFO 2026-06-08 09:02:30 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr17:80,289,825 INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 187610 as yet unmatched pairs. 5500 records in RAM. INFO 2026-06-08 09:02:32 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,429 INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 186120 as yet unmatched pairs. 4010 records in RAM. INFO 2026-06-08 09:02:33 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr17:82,025,454 INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 183878 as yet unmatched pairs. 1768 records in RAM. INFO 2026-06-08 09:02:35 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr18:357,498 INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 182140 as yet unmatched pairs. 8222 records in RAM. INFO 2026-06-08 09:02:36 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr18:10,705,598 INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 180369 as yet unmatched pairs. 6451 records in RAM. INFO 2026-06-08 09:02:38 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr18:29,153,268 INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 178749 as yet unmatched pairs. 4830 records in RAM. INFO 2026-06-08 09:02:39 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr18:48,950,292 INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 177527 as yet unmatched pairs. 3608 records in RAM. INFO 2026-06-08 09:02:41 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr18:62,102,897 INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 175772 as yet unmatched pairs. 1852 records in RAM. INFO 2026-06-08 09:02:42 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr18:79,919,212 INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 174122 as yet unmatched pairs. 202 records in RAM. INFO 2026-06-08 09:02:44 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr19:990,962 INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 171910 as yet unmatched pairs. 71568 records in RAM. INFO 2026-06-08 09:02:46 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr19:1,432,592 INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 170123 as yet unmatched pairs. 69781 records in RAM. INFO 2026-06-08 09:02:47 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr19:2,247,604 INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 167946 as yet unmatched pairs. 67604 records in RAM. INFO 2026-06-08 09:02:49 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr19:3,611,939 INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 166012 as yet unmatched pairs. 65669 records in RAM. INFO 2026-06-08 09:02:50 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr19:4,556,045 INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 164313 as yet unmatched pairs. 63970 records in RAM. INFO 2026-06-08 09:02:52 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 2s. Last read position: chr19:5,894,720 INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 162764 as yet unmatched pairs. 62421 records in RAM. INFO 2026-06-08 09:02:54 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr19:6,709,701 INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 161871 as yet unmatched pairs. 61528 records in RAM. INFO 2026-06-08 09:02:55 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr19:7,682,663 INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 159011 as yet unmatched pairs. 58668 records in RAM. INFO 2026-06-08 09:02:57 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr19:9,958,675 INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 156992 as yet unmatched pairs. 56649 records in RAM. INFO 2026-06-08 09:02:58 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr19:10,702,199 INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 155053 as yet unmatched pairs. 54710 records in RAM. INFO 2026-06-08 09:03:00 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr19:11,346,548 INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 153222 as yet unmatched pairs. 52879 records in RAM. INFO 2026-06-08 09:03:01 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr19:12,730,976 INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 151747 as yet unmatched pairs. 51404 records in RAM. INFO 2026-06-08 09:03:03 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr19:13,763,024 INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 149774 as yet unmatched pairs. 49431 records in RAM. INFO 2026-06-08 09:03:05 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr19:14,621,735 INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 147902 as yet unmatched pairs. 47558 records in RAM. INFO 2026-06-08 09:03:06 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr19:15,243,392 INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 146437 as yet unmatched pairs. 46093 records in RAM. INFO 2026-06-08 09:03:08 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr19:16,519,193 INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 144102 as yet unmatched pairs. 43758 records in RAM. INFO 2026-06-08 09:03:09 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr19:17,807,859 INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 141884 as yet unmatched pairs. 41540 records in RAM. INFO 2026-06-08 09:03:11 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr19:18,573,289 INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 140339 as yet unmatched pairs. 39995 records in RAM. INFO 2026-06-08 09:03:12 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr19:21,033,546 INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 138095 as yet unmatched pairs. 37751 records in RAM. INFO 2026-06-08 09:03:14 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 2s. Last read position: chr19:35,122,785 INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 136803 as yet unmatched pairs. 36459 records in RAM. INFO 2026-06-08 09:03:16 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr19:35,939,409 INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 133975 as yet unmatched pairs. 33631 records in RAM. INFO 2026-06-08 09:03:17 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr19:38,717,258 INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 132589 as yet unmatched pairs. 32245 records in RAM. INFO 2026-06-08 09:03:19 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:39,407,976 INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 131952 as yet unmatched pairs. 31607 records in RAM. INFO 2026-06-08 09:03:20 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr19:39,877,892 INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 129297 as yet unmatched pairs. 28952 records in RAM. INFO 2026-06-08 09:03:22 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr19:39,914,144 INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 128096 as yet unmatched pairs. 27751 records in RAM. INFO 2026-06-08 09:03:23 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:40,611,230 INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 126114 as yet unmatched pairs. 25765 records in RAM. INFO 2026-06-08 09:03:24 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr19:41,720,033 INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 124250 as yet unmatched pairs. 23901 records in RAM. INFO 2026-06-08 09:03:26 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:42,289,364 INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 122391 as yet unmatched pairs. 22042 records in RAM. INFO 2026-06-08 09:03:27 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr19:44,298,839 INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 119950 as yet unmatched pairs. 19601 records in RAM. INFO 2026-06-08 09:03:29 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:45,522,764 INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 118070 as yet unmatched pairs. 17721 records in RAM. INFO 2026-06-08 09:03:30 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:46,697,192 INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 115728 as yet unmatched pairs. 15379 records in RAM. INFO 2026-06-08 09:03:32 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:47,778,719 INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 114150 as yet unmatched pairs. 13800 records in RAM. INFO 2026-06-08 09:03:33 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:48,965,590 INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 112742 as yet unmatched pairs. 12392 records in RAM. INFO 2026-06-08 09:03:34 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr19:49,514,209 INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 110412 as yet unmatched pairs. 10062 records in RAM. INFO 2026-06-08 09:03:37 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 2s. Last read position: chr19:49,862,054 INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 108693 as yet unmatched pairs. 8342 records in RAM. INFO 2026-06-08 09:03:38 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:52,613,975 INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 106574 as yet unmatched pairs. 6223 records in RAM. INFO 2026-06-08 09:03:40 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:54,458,415 INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 105241 as yet unmatched pairs. 4890 records in RAM. INFO 2026-06-08 09:03:41 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:55,518,268 INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 103272 as yet unmatched pairs. 2921 records in RAM. INFO 2026-06-08 09:03:42 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:58,085,249 INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 101583 as yet unmatched pairs. 1232 records in RAM. INFO 2026-06-08 09:03:44 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr20:1,937,386 INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 99598 as yet unmatched pairs. 23428 records in RAM. INFO 2026-06-08 09:03:46 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr20:3,800,295 INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 97649 as yet unmatched pairs. 21479 records in RAM. INFO 2026-06-08 09:03:47 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr20:17,620,352 INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 96053 as yet unmatched pairs. 19883 records in RAM. INFO 2026-06-08 09:03:48 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr20:23,084,468 INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 94687 as yet unmatched pairs. 18517 records in RAM. INFO 2026-06-08 09:03:50 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr20:32,435,443 INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 92638 as yet unmatched pairs. 16466 records in RAM. INFO 2026-06-08 09:03:52 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 2s. Last read position: chr20:35,654,484 INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 90997 as yet unmatched pairs. 14825 records in RAM. INFO 2026-06-08 09:03:54 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr20:37,228,634 INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 89569 as yet unmatched pairs. 13396 records in RAM. INFO 2026-06-08 09:03:56 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr20:44,114,830 INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 87845 as yet unmatched pairs. 11671 records in RAM. INFO 2026-06-08 09:03:57 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr20:45,899,832 INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 86961 as yet unmatched pairs. 10787 records in RAM. INFO 2026-06-08 09:03:59 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr20:48,681,250 INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 83716 as yet unmatched pairs. 7535 records in RAM. INFO 2026-06-08 09:04:00 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr20:56,397,269 INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 82022 as yet unmatched pairs. 5838 records in RAM. INFO 2026-06-08 09:04:01 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr20:62,310,720 INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 80676 as yet unmatched pairs. 4491 records in RAM. INFO 2026-06-08 09:04:03 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr20:62,879,401 INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 78322 as yet unmatched pairs. 2137 records in RAM. INFO 2026-06-08 09:04:04 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr20:64,049,362 INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 76272 as yet unmatched pairs. 87 records in RAM. INFO 2026-06-08 09:04:05 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,331 INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 75048 as yet unmatched pairs. 17050 records in RAM. INFO 2026-06-08 09:04:07 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,199 INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 74810 as yet unmatched pairs. 16812 records in RAM. INFO 2026-06-08 09:04:08 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,564 INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 73605 as yet unmatched pairs. 15606 records in RAM. INFO 2026-06-08 09:04:09 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr21:26,089,997 INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 73362 as yet unmatched pairs. 15363 records in RAM. INFO 2026-06-08 09:04:11 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr21:33,555,282 INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 70494 as yet unmatched pairs. 12494 records in RAM. INFO 2026-06-08 09:04:13 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr21:39,348,557 INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 68984 as yet unmatched pairs. 10984 records in RAM. INFO 2026-06-08 09:04:14 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr21:44,323,887 INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 67270 as yet unmatched pairs. 9270 records in RAM. INFO 2026-06-08 09:04:15 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr21:45,492,540 INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 66758 as yet unmatched pairs. 8758 records in RAM. INFO 2026-06-08 09:04:17 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,023 INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 65528 as yet unmatched pairs. 7522 records in RAM. INFO 2026-06-08 09:04:18 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr21:46,111,511 INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 63310 as yet unmatched pairs. 5304 records in RAM. INFO 2026-06-08 09:04:20 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr21:46,122,885 INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 63430 as yet unmatched pairs. 5424 records in RAM. INFO 2026-06-08 09:04:22 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr22:16,702,091 INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 57995 as yet unmatched pairs. 24214 records in RAM. INFO 2026-06-08 09:04:24 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr22:20,425,372 INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 56121 as yet unmatched pairs. 22340 records in RAM. INFO 2026-06-08 09:04:25 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr22:23,263,361 INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 54554 as yet unmatched pairs. 20773 records in RAM. INFO 2026-06-08 09:04:27 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr22:25,174,370 INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 52647 as yet unmatched pairs. 18866 records in RAM. INFO 2026-06-08 09:04:28 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,774 INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 50946 as yet unmatched pairs. 17164 records in RAM. INFO 2026-06-08 09:04:30 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr22:31,097,270 INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 50158 as yet unmatched pairs. 16376 records in RAM. INFO 2026-06-08 09:04:31 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr22:36,257,405 INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 47475 as yet unmatched pairs. 13693 records in RAM. INFO 2026-06-08 09:04:32 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr22:36,937,810 INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 45779 as yet unmatched pairs. 11997 records in RAM. INFO 2026-06-08 09:04:34 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr22:38,214,510 INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 43777 as yet unmatched pairs. 9995 records in RAM. INFO 2026-06-08 09:04:35 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr22:39,521,859 INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 43084 as yet unmatched pairs. 9302 records in RAM. INFO 2026-06-08 09:04:37 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr22:41,604,110 INFO 2026-06-08 09:04:37 MarkDuplicates Tracking 40428 as yet unmatched pairs. 6645 records in RAM. INFO 2026-06-08 09:04:38 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr22:45,203,108 INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 38767 as yet unmatched pairs. 4984 records in RAM. INFO 2026-06-08 09:04:39 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr22:50,226,329 INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 36693 as yet unmatched pairs. 2910 records in RAM. INFO 2026-06-08 09:04:41 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr22:50,531,207 INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 34690 as yet unmatched pairs. 907 records in RAM. INFO 2026-06-08 09:04:43 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chrX:3,311,449 INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 32688 as yet unmatched pairs. 26639 records in RAM. INFO 2026-06-08 09:04:44 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chrX:20,177,034 INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 31152 as yet unmatched pairs. 25098 records in RAM. INFO 2026-06-08 09:04:45 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chrX:40,597,306 INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 29645 as yet unmatched pairs. 23591 records in RAM. INFO 2026-06-08 09:04:47 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chrX:47,583,446 INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 28324 as yet unmatched pairs. 22269 records in RAM. INFO 2026-06-08 09:04:49 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chrX:51,895,169 INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 26336 as yet unmatched pairs. 20281 records in RAM. INFO 2026-06-08 09:04:50 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chrX:54,813,011 INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 25014 as yet unmatched pairs. 18959 records in RAM. INFO 2026-06-08 09:04:52 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chrX:71,224,080 INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 23380 as yet unmatched pairs. 17324 records in RAM. INFO 2026-06-08 09:04:53 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chrX:77,902,732 INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 22272 as yet unmatched pairs. 16216 records in RAM. INFO 2026-06-08 09:04:55 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chrX:107,714,551 INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 21047 as yet unmatched pairs. 14991 records in RAM. INFO 2026-06-08 09:04:56 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chrX:129,646,337 INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 18903 as yet unmatched pairs. 12847 records in RAM. INFO 2026-06-08 09:04:57 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chrX:150,776,220 INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 17596 as yet unmatched pairs. 11540 records in RAM. INFO 2026-06-08 09:04:59 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chrX:154,018,755 INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 15798 as yet unmatched pairs. 9741 records in RAM. INFO 2026-06-08 09:05:01 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chrX:154,352,376 INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 16707 as yet unmatched pairs. 10650 records in RAM. INFO 2026-06-08 09:05:03 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chrX:154,358,505 INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 15165 as yet unmatched pairs. 9108 records in RAM. INFO 2026-06-08 09:05:04 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chrX:154,361,371 INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 15337 as yet unmatched pairs. 9280 records in RAM. INFO 2026-06-08 09:05:06 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chrX:154,365,389 INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 12024 as yet unmatched pairs. 5967 records in RAM. INFO 2026-06-08 09:05:08 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chrX:154,371,127 INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 10821 as yet unmatched pairs. 4764 records in RAM. INFO 2026-06-08 09:05:09 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chrY:13,336,048 INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 5885 as yet unmatched pairs. 327 records in RAM. INFO 2026-06-08 09:05:11 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,800 INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 3565 as yet unmatched pairs. 146 records in RAM. INFO 2026-06-08 09:05:12 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: KI270711.1:20,113 INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 3419 as yet unmatched pairs. 43 records in RAM. INFO 2026-06-08 09:05:13 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: KI270733.1:170,789 INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 172 as yet unmatched pairs. 160 records in RAM. INFO 2026-06-08 09:05:14 MarkDuplicates Read 640885734 records. 0 pairs never matched. INFO 2026-06-08 09:06:05 MarkDuplicates After buildSortedReadEndLists freeMemory: 204139400; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:06:05 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 09:06:10 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 09:06:11 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:06:36 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-08 09:06:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,524 INFO 2026-06-08 09:06:36 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-08 09:06:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,360 INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1820 INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,392 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder Large duplicate set. size = 1103 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,601 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder Large duplicate set. size = 1612 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,336 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder Large duplicate set. size = 1852 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,329 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder Large duplicate set. size = 1341 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,914 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder Large duplicate set. size = 2043 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,217 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,840 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder Large duplicate set. size = 1017 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,984 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder Large duplicate set. size = 1019 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,221 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder Large duplicate set. size = 1137 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,688 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder Large duplicate set. size = 1007 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,454 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder Large duplicate set. size = 1160 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,128 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder Large duplicate set. size = 1472 INFO 2026-06-08 09:07:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,123 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1079 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,507 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1290 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,303 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1010 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,263 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1480 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,357 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1215 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,550 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1351 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,593 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 2296 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,068 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,390 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1633 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,089 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1254 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,098 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 2648 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,253 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,606 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1272 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,451 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1026 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,021 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1291 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,216 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1172 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,722 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1265 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,481 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1202 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,393 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 2820 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,064 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,101 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1390 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,577 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,105 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1062 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,659 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,086 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1300 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,650 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1235 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,048 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder Large duplicate set. size = 1007 INFO 2026-06-08 09:07:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,328 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,614 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1174 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,789 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,493 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,152 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1130 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,108 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1192 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,397 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1162 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,760 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1545 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,429 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1039 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,063 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1734 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,597 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 2212 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,074 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,536 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1469 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,454 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1228 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,204 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1217 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,074 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1232 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,931 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1008 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,557 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1005 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,616 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1047 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,190 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1467 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,901 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1133 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,326 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1032 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,937 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1514 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,123 INFO 2026-06-08 09:07:32 OpticalDuplicateFinder Large duplicate set. size = 1693 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,310 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1077 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,564 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1423 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,360 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1303 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,278 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1297 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,298 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1984 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,258 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1084 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,917 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1133 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,415 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1797 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,811 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1346 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,908 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1647 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,680 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1242 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,020 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,180 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1395 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,972 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1176 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,433 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1167 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,063 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,415 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1389 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,154 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 2452 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,521 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,718 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1492 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,724 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 3289 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,499 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,123 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,026 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1156 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,812 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1114 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,950 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1190 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,733 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1029 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,028 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1736 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,436 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1585 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,996 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 2031 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,237 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,076 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,965 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1206 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,813 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1131 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,124 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1719 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,610 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1055 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,360 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1328 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,734 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1333 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,973 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1306 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,548 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1219 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,637 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1408 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,119 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder Large duplicate set. size = 1012 INFO 2026-06-08 09:07:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,919 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1232 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,741 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1693 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,575 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1211 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,282 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1110 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,305 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1636 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,033 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1084 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,530 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1612 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,523 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 2478 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,256 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,530 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1258 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,533 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1056 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,134 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 2049 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,864 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,776 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 2461 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,933 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,912 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,799 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1334 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,209 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1276 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,063 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1036 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,666 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 2073 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,754 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,541 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1326 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,827 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1072 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,567 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1381 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,340 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1832 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,653 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1175 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,785 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1157 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,532 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1891 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,005 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,812 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1226 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,871 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1359 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,446 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1817 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,256 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 2023 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,684 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,549 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 2520 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,115 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,382 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1703 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,148 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder Large duplicate set. size = 1133 INFO 2026-06-08 09:07:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,383 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1285 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,837 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1141 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,645 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1081 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,967 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1114 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,349 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1105 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,338 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,206 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1012 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,327 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1896 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,200 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1211 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,415 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1174 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,654 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1346 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,421 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1141 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,459 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1176 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,191 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1010 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,799 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1983 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,064 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1084 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,299 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1427 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,253 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1014 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,612 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1505 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,118 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1053 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,040 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1097 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,163 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1167 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,868 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,188 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1337 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,321 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1506 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,971 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1421 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,436 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1447 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,995 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1343 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,244 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1640 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,090 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1239 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,959 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1434 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,827 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1619 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,622 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1853 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,716 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1030 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,786 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1230 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,438 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1207 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,363 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1355 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,537 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1945 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,266 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 2103 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,984 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,459 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1098 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,726 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1121 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,669 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1335 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,623 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1177 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,560 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1230 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,982 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1316 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,635 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1136 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,710 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1046 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,955 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 1924 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,755 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 2194 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,915 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,236 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 2597 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,131 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,114 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder Large duplicate set. size = 2317 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,548 INFO 2026-06-08 09:07:35 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,928 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1250 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,202 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1238 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,192 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1129 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,645 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1032 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,657 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1183 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,189 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1090 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,695 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1104 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,305 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1570 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,815 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 2887 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,708 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,125 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1075 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,251 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1306 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,319 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1596 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,310 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1787 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,553 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,415 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1480 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,299 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1715 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,220 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 2171 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,088 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,162 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1001 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,954 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1996 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,529 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1990 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,702 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1191 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,113 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1184 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,678 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1065 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,079 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 2178 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,555 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,180 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1362 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,093 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,709 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1080 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,286 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1028 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,066 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1332 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,435 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1015 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,266 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1821 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,725 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 1799 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,427 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 2106 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,493 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,722 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder Large duplicate set. size = 2059 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,439 INFO 2026-06-08 09:07:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,211 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1034 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,079 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1457 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,980 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1317 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,408 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1166 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,988 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1108 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,323 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1051 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,994 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,249 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1282 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,872 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1494 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,728 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1278 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,018 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1883 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,008 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1131 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,629 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1164 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,819 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1451 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,736 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,069 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1673 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,514 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 2627 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,569 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,582 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder Large duplicate set. size = 1242 INFO 2026-06-08 09:07:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,179 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1368 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,867 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1049 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,034 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1028 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,224 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1088 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,916 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1065 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,154 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,549 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1211 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,585 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1344 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,937 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 2319 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,531 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,523 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1257 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,605 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1447 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,562 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1213 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,681 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1513 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,453 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1866 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,341 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 2083 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,794 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,198 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1616 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,697 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 2173 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,233 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,359 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1162 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,088 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1262 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,824 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1009 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,318 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1015 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,757 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1003 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,756 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1113 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,297 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1142 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,474 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1052 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,488 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1699 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,292 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1247 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,948 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1068 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,738 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1073 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,488 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1438 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,301 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 2763 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,610 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,183 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 4670 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,157 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,245 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,159 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,427 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1022 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,831 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1326 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,593 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 2487 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,649 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,613 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1209 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,287 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 3340 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,293 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,314 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,296 INFO 2026-06-08 09:07:38 OpticalDuplicateFinder Large duplicate set. size = 1100 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,501 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1133 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,263 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 3405 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,501 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,429 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,299 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1180 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,198 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1165 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,176 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 2423 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,921 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,606 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1049 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,354 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1132 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,952 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1138 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,690 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1102 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,890 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1626 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,536 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1153 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,194 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1049 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,048 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1460 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,691 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1958 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,055 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1131 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,772 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 2901 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,665 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,621 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1593 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,951 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1325 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,354 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1815 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,190 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1804 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,416 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1994 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,924 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1235 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,874 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1016 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,129 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1562 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,909 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 2414 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,779 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,703 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1282 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,373 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1352 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,941 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1397 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,476 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,650 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1575 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,353 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder Large duplicate set. size = 1038 INFO 2026-06-08 09:07:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,657 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 2040 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,381 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,205 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 1685 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,997 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 1130 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,633 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 1096 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,712 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 1092 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,471 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 1125 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,549 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 1301 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,476 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 1484 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,509 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 2001 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,531 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,220 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 3358 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,822 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,789 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,310 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,321 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 1143 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,252 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 1143 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,264 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder Large duplicate set. size = 1015 INFO 2026-06-08 09:07:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,021 INFO 2026-06-08 09:07:55 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 09:07:55 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:08:48 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 09:08:58 MarkDuplicates After generateDuplicateIndexes freeMemory: 203832320; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:08:58 MarkDuplicates Marking 451600536 records as duplicates. INFO 2026-06-08 09:08:58 MarkDuplicates Found 12956110 optical duplicate clusters. INFO 2026-06-08 09:08:58 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 09:09:24 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:25s. Time for last 10,000,000: 25s. Last read position: chr1:21,884,863 INFO 2026-06-08 09:09:49 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 25s. Last read position: chr1:45,634,161 INFO 2026-06-08 09:10:12 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:01:14s. Time for last 10,000,000: 22s. Last read position: chr1:145,994,700 INFO 2026-06-08 09:10:35 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:36s. Time for last 10,000,000: 22s. Last read position: chr1:161,048,015 INFO 2026-06-08 09:10:58 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:59s. Time for last 10,000,000: 22s. Last read position: chr1:207,886,881 INFO 2026-06-08 09:11:17 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:02:18s. Time for last 10,000,000: 19s. Last read position: chr2:30,231,718 INFO 2026-06-08 09:11:35 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:36s. Time for last 10,000,000: 18s. Last read position: chr2:73,909,090 INFO 2026-06-08 09:11:53 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:55s. Time for last 10,000,000: 18s. Last read position: chr2:159,453,641 INFO 2026-06-08 09:12:12 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:03:13s. Time for last 10,000,000: 18s. Last read position: chr2:215,373,373 INFO 2026-06-08 09:12:29 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:31s. Time for last 10,000,000: 17s. Last read position: chr2:231,456,641 INFO 2026-06-08 09:12:47 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:48s. Time for last 10,000,000: 17s. Last read position: chr3:42,659,615 INFO 2026-06-08 09:13:05 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:04:06s. Time for last 10,000,000: 17s. Last read position: chr3:100,732,637 INFO 2026-06-08 09:13:22 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 16s. Last read position: chr3:184,363,563 INFO 2026-06-08 09:13:39 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:40s. Time for last 10,000,000: 17s. Last read position: chr4:38,878,242 INFO 2026-06-08 09:13:56 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:57s. Time for last 10,000,000: 17s. Last read position: chr4:137,521,131 INFO 2026-06-08 09:14:13 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:05:14s. Time for last 10,000,000: 17s. Last read position: chr5:76,631,868 INFO 2026-06-08 09:14:30 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:32s. Time for last 10,000,000: 17s. Last read position: chr5:150,402,085 INFO 2026-06-08 09:14:49 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:50s. Time for last 10,000,000: 18s. Last read position: chr6:6,248,329 INFO 2026-06-08 09:15:07 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:06:08s. Time for last 10,000,000: 17s. Last read position: chr6:32,056,761 INFO 2026-06-08 09:15:29 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:06:30s. Time for last 10,000,000: 21s. Last read position: chr6:109,382,213 INFO 2026-06-08 09:15:48 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:49s. Time for last 10,000,000: 19s. Last read position: chr7:5,332,706 INFO 2026-06-08 09:16:06 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:07:08s. Time for last 10,000,000: 18s. Last read position: chr7:74,753,975 INFO 2026-06-08 09:16:26 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:07:27s. Time for last 10,000,000: 19s. Last read position: chr7:100,997,142 INFO 2026-06-08 09:16:44 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:45s. Time for last 10,000,000: 18s. Last read position: chr7:143,264,990 INFO 2026-06-08 09:17:02 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:08:03s. Time for last 10,000,000: 17s. Last read position: chr8:41,940,992 INFO 2026-06-08 09:17:20 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:08:22s. Time for last 10,000,000: 18s. Last read position: chr8:143,861,514 INFO 2026-06-08 09:17:38 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:39s. Time for last 10,000,000: 17s. Last read position: chr9:35,829,439 INFO 2026-06-08 09:18:03 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:09:05s. Time for last 10,000,000: 25s. Last read position: chr9:122,911,248 INFO 2026-06-08 09:18:23 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:09:25s. Time for last 10,000,000: 20s. Last read position: chr9:137,743,977 INFO 2026-06-08 09:18:41 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:09:42s. Time for last 10,000,000: 17s. Last read position: chr10:76,915,020 INFO 2026-06-08 09:18:59 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:10:00s. Time for last 10,000,000: 17s. Last read position: chr10:122,595,406 INFO 2026-06-08 09:19:18 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 19s. Last read position: chr11:6,619,217 INFO 2026-06-08 09:19:43 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:10:45s. Time for last 10,000,000: 25s. Last read position: chr11:62,533,448 INFO 2026-06-08 09:20:01 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:11:03s. Time for last 10,000,000: 18s. Last read position: chr11:74,718,829 INFO 2026-06-08 09:20:24 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:11:26s. Time for last 10,000,000: 22s. Last read position: chr12:3,019,120 INFO 2026-06-08 09:20:48 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:11:49s. Time for last 10,000,000: 23s. Last read position: chr12:48,768,678 INFO 2026-06-08 09:21:11 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:12:12s. Time for last 10,000,000: 22s. Last read position: chr12:57,500,402 INFO 2026-06-08 09:21:35 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:12:37s. Time for last 10,000,000: 24s. Last read position: chr12:124,372,027 INFO 2026-06-08 09:21:59 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:13:00s. Time for last 10,000,000: 23s. Last read position: chr13:110,445,881 INFO 2026-06-08 09:22:17 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:13:19s. Time for last 10,000,000: 18s. Last read position: chr14:69,054,338 INFO 2026-06-08 09:22:36 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:13:38s. Time for last 10,000,000: 19s. Last read position: chr14:105,588,260 INFO 2026-06-08 09:22:57 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:13:58s. Time for last 10,000,000: 20s. Last read position: chr15:43,763,130 INFO 2026-06-08 09:23:15 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:14:16s. Time for last 10,000,000: 18s. Last read position: chr15:88,467,166 INFO 2026-06-08 09:23:33 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:14:35s. Time for last 10,000,000: 18s. Last read position: chr16:4,812,135 INFO 2026-06-08 09:23:52 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 18s. Last read position: chr16:18,384,989 INFO 2026-06-08 09:24:10 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:15:11s. Time for last 10,000,000: 18s. Last read position: chr16:56,625,818 INFO 2026-06-08 09:24:28 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:15:29s. Time for last 10,000,000: 17s. Last read position: chr17:2,058,461 INFO 2026-06-08 09:24:45 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:15:47s. Time for last 10,000,000: 17s. Last read position: chr17:35,103,462 INFO 2026-06-08 09:25:04 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:16:06s. Time for last 10,000,000: 18s. Last read position: chr17:50,185,588 INFO 2026-06-08 09:25:23 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:16:24s. Time for last 10,000,000: 18s. Last read position: chr17:50,189,858 INFO 2026-06-08 09:25:42 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:16:43s. Time for last 10,000,000: 18s. Last read position: chr17:50,194,179 INFO 2026-06-08 09:26:00 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:17:01s. Time for last 10,000,000: 17s. Last read position: chr17:50,197,752 INFO 2026-06-08 09:26:17 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:17:19s. Time for last 10,000,000: 17s. Last read position: chr17:75,589,025 INFO 2026-06-08 09:26:35 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:17:36s. Time for last 10,000,000: 17s. Last read position: chr18:62,102,897 INFO 2026-06-08 09:26:52 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:17:53s. Time for last 10,000,000: 16s. Last read position: chr19:9,958,675 INFO 2026-06-08 09:27:09 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:18:10s. Time for last 10,000,000: 16s. Last read position: chr19:21,033,546 INFO 2026-06-08 09:27:25 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:18:26s. Time for last 10,000,000: 16s. Last read position: chr19:44,298,839 INFO 2026-06-08 09:27:41 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:18:42s. Time for last 10,000,000: 16s. Last read position: chr19:58,085,249 INFO 2026-06-08 09:27:59 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:19:00s. Time for last 10,000,000: 17s. Last read position: chr20:48,681,250 INFO 2026-06-08 09:28:15 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:19:16s. Time for last 10,000,000: 16s. Last read position: chr21:39,348,557 INFO 2026-06-08 09:28:33 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:19:34s. Time for last 10,000,000: 17s. Last read position: chr22:29,299,774 INFO 2026-06-08 09:28:50 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:19:51s. Time for last 10,000,000: 17s. Last read position: chrX:3,311,449 INFO 2026-06-08 09:29:07 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:20:08s. Time for last 10,000,000: 16s. Last read position: chrX:150,776,220 INFO 2026-06-08 09:29:24 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:20:25s. Time for last 10,000,000: 17s. Last read position: KI270733.1:170,789 INFO 2026-06-08 09:29:33 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 09:29:33 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 09:29:33 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 09:29:33 MarkDuplicates Before output close freeMemory: 203772824; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:29:33 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 09:29:33 MarkDuplicates After output close freeMemory: 104030616; totalMemory: 134217728; maxMemory: 63585648640 [Mon Jun 08 09:29:33 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 44.25 minutes. Runtime.totalMemory()=134217728 Tool returned: 0 ls: *cram: No such file or directory ls: *.crai: No such file or directory