Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/47682aca1a1d5c539a8b9cd02483e8/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/12ec5b49feaae346af532a706684ea/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/12ec5b49feaae346af532a706684ea/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/86d6944c8bcf236ec9d71b3a03b96f/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 289478202
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1351d2-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	289478202
Known Splicing Events:	286958642
Partial Novel Splicing Events:	1407890
Novel Splicing Events:	1035385
Filtered Splicing Events:	76285

Total splicing  Junctions:	371412
Known Splicing Junctions:	228143
Partial Novel Splicing Junctions:	81229
Novel Splicing Junctions:	62040

===================================================================
Create BED file ...
Create Interact file ...