File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/9e27996891e9bd3e2cfadc537c173f/.command.log
Size
1.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_TO_MULTIQC (aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/45b1d98dfb08792955ae675f70cabc/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/9e27996891e9bd3e2cfadc537c173f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/9e27996891e9bd3e2cfadc537c173f/.command.run
==> STAGING COMPLETE (3 inputs)

Processing SeqTools file: aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_full_basic_stats.tsv
Warning: scipy not available. GC bias calculation will be simplified.
Successfully converted aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_full_basic_stats.tsv to aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_seqtool_mqc.tsv
  Samples: 1
  SeqTools (general stats) columns: 18
  Metrics: reads, frac_unmapped, frac_dupes, unique_reads, frac_reads_on_target, frac_pairs_on_target, frac_reads_off_target, frac_pairs_off_target, reads_on_target, pairs_on_target, reads_off_target, pairs_off_target, mean_depth, q50_depth, frac_bases_gt30x, frac_bases_gt100x, n_q30, gc_bias