Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/a7a35a7144f792dccab6349f843b5a/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/692d567b7bfd4dc2a86982d501219a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/692d567b7bfd4dc2a86982d501219a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/0acef3269a08589a26e4a367bc38ea/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory