File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/83dc74367d9d8cfa5198999e18e9fe/.command.log
Size
6.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-1351d2-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/5fb9b57065d892b2b5c2ad5d3d52c4/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/83dc74367d9d8cfa5198999e18e9fe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/83dc74367d9d8cfa5198999e18e9fe/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/5d98f32541ce79863f5fc05c2af9b5/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
LYST--NID1
starfusion
arriba
IMMP2L--DOCK4
starfusion
arriba
ILF2--VPS72
starfusion
ENG--ST6GALNAC6
starfusion
arriba
TLK2--AC240565.1
starfusion
CREBBP--TRAP1
arriba
RBM14--RBM4B
arriba
CDK12--CDK12
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA9
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
ACBD5--ARMC4P1
arriba
PIP5K1A--ILF2
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHA13
arriba

  0%|          | 0/26 [00:00<?, ?it/s]
Processing LYST--NID1:   0%|          | 0/26 [00:00<?, ?it/s]
Processing LYST--NID1:   4%|▍         | 1/26 [00:00<00:02,  9.23it/s]
Processing IMMP2L--DOCK4:   4%|▍         | 1/26 [00:00<00:02,  9.23it/s]
Processing IMMP2L--DOCK4:   8%|▊         | 2/26 [00:00<00:02,  9.47it/s]
Processing ILF2--VPS72:   8%|▊         | 2/26 [00:00<00:02,  9.47it/s]  
Processing ILF2--VPS72:  12%|█▏        | 3/26 [00:00<00:02,  9.55it/s]
Processing ENG--ST6GALNAC6:  12%|█▏        | 3/26 [00:00<00:02,  9.55it/s]
Processing ENG--ST6GALNAC6:  15%|█▌        | 4/26 [00:00<00:02,  9.58it/s]
Processing TLK2--AC240565.1:  15%|█▌        | 4/26 [00:00<00:02,  9.58it/s]
Processing TLK2--AC240565.1:  19%|█▉        | 5/26 [00:00<00:02,  9.61it/s]
Processing CREBBP--TRAP1:  19%|█▉        | 5/26 [00:00<00:02,  9.61it/s]   
Processing CREBBP--TRAP1:  23%|██▎       | 6/26 [00:00<00:02,  9.62it/s]
Processing RBM14--RBM4B:  23%|██▎       | 6/26 [00:00<00:02,  9.62it/s] 
Processing RBM14--RBM4B:  27%|██▋       | 7/26 [00:00<00:01,  9.63it/s]
Processing CDK12--CDK12:  27%|██▋       | 7/26 [00:00<00:01,  9.63it/s]
Processing CDK12--CDK12:  31%|███       | 8/26 [00:00<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  31%|███       | 8/26 [00:00<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  35%|███▍      | 9/26 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  35%|███▍      | 9/26 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  38%|███▊      | 10/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC4:  38%|███▊      | 10/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC4:  42%|████▏     | 11/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  42%|████▏     | 11/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  46%|████▌     | 12/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  46%|████▌     | 12/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  50%|█████     | 13/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  50%|█████     | 13/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  54%|█████▍    | 14/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  54%|█████▍    | 14/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  58%|█████▊    | 15/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  58%|█████▊    | 15/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  62%|██████▏   | 16/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  62%|██████▏   | 16/26 [00:01<00:01,  9.64it/s] 
Processing PCDHGB2--PCDHGB6:  65%|██████▌   | 17/26 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  65%|██████▌   | 17/26 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  69%|██████▉   | 18/26 [00:01<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC2:  69%|██████▉   | 18/26 [00:01<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC2:  73%|███████▎  | 19/26 [00:01<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC1:  73%|███████▎  | 19/26 [00:01<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC1:  77%|███████▋  | 20/26 [00:02<00:00,  9.64it/s]
Processing PCDHA10--PCDHA13:  77%|███████▋  | 20/26 [00:02<00:00,  9.64it/s]
Processing PCDHA10--PCDHA13:  81%|████████  | 21/26 [00:02<00:00,  9.64it/s]
Processing ACBD5--ARMC4P1:  81%|████████  | 21/26 [00:02<00:00,  9.64it/s]  
Processing ACBD5--ARMC4P1:  85%|████████▍ | 22/26 [00:02<00:00,  9.64it/s]
Processing PIP5K1A--ILF2:  85%|████████▍ | 22/26 [00:02<00:00,  9.64it/s] 
Processing PIP5K1A--ILF2:  88%|████████▊ | 23/26 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC2:  88%|████████▊ | 23/26 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC2:  92%|█████████▏| 24/26 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC1:  92%|█████████▏| 24/26 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC1:  96%|█████████▌| 25/26 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHA13:  96%|█████████▌| 25/26 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHA13: 100%|██████████| 26/26 [00:02<00:00,  9.64it/s]
Processing PCDHA11--PCDHA13: 100%|██████████| 26/26 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory