File Info
- Filename
- aih-tih-sc-1351d2-R1_A23WJ53LT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/83dc74367d9d8cfa5198999e18e9fe/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.fusions.csv
- Size
- 6.5 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-1351d2-R1_A23WJ53LT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| LYST--NID1 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr1:235866843#chr1:235981782,reading-frame: .,type: duplication,split_reads1: 4,split_reads2: 53,discordant_mates: 0,coverage1: 947,coverage2: 639,confidence: high | position: chr1:235866843:-#chr1:235981782:-,junction_reads: 59,spanning_reads: 0,ffmp: 0.2356 |
| IMMP2L--DOCK4 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr7:111487238#chr7:112004131,reading-frame: out-of-frame,type: duplication,split_reads1: 12,split_reads2: 17,discordant_mates: 0,coverage1: 1226,coverage2: 787,confidence: high | position: chr7:111487238:-#chr7:112004131:-,junction_reads: 31,spanning_reads: 0,ffmp: 0.1238 |
| ILF2--VPS72 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:153669836:-#chr1:151185950:-,junction_reads: 17,spanning_reads: 0,ffmp: 0.0679 | ||
| ENG--ST6GALNAC6 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:127819622#chr9:127891043,reading-frame: in-frame,type: duplication,split_reads1: 7,split_reads2: 5,discordant_mates: 0,coverage1: 1316,coverage2: 655,confidence: high | position: chr9:127819622:-#chr9:127891043:-,junction_reads: 13,spanning_reads: 0,ffmp: 0.0519 | |
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0042 | ||
| CREBBP--TRAP1 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr16:3744894#chr16:3715011,reading-frame: out-of-frame,type: inversion/5'-5',split_reads1: 93,split_reads2: 33,discordant_mates: 0,coverage1: 3656,coverage2: 72,confidence: high | |
| RBM14--RBM4B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:66617057#chr11:66677091,reading-frame: out-of-frame,type: inversion,split_reads1: 20,split_reads2: 18,discordant_mates: 0,coverage1: 14139,coverage2: 6318,confidence: high | ||
| CDK12--CDK12 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:39462638#chr17:39465109,reading-frame: out-of-frame,type: inversion/3'-3',split_reads1: 28,split_reads2: 7,discordant_mates: 0,coverage1: 3192,coverage2: 21,confidence: high | |
| PCDHGB2--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 11,discordant_mates: 0,coverage1: 729,coverage2: 2270,confidence: high | ||
| PCDHGB2--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 11,discordant_mates: 0,coverage1: 729,coverage2: 2270,confidence: high | ||
| PCDHGB2--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 11,discordant_mates: 0,coverage1: 729,coverage2: 2270,confidence: high | ||
| PCDHGB2--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 11,discordant_mates: 0,coverage1: 729,coverage2: 2270,confidence: high | ||
| PCDHGB2--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 11,discordant_mates: 0,coverage1: 729,coverage2: 2270,confidence: high | ||
| PCDHGB2--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 11,discordant_mates: 0,coverage1: 729,coverage2: 2270,confidence: high | ||
| PCDHGB2--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 11,discordant_mates: 0,coverage1: 729,coverage2: 2270,confidence: high | ||
| PCDHGB2--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 11,discordant_mates: 0,coverage1: 729,coverage2: 2270,confidence: high | ||
| PCDHGB2--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 11,discordant_mates: 0,coverage1: 729,coverage2: 2270,confidence: high | ||
| PCDHGB2--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 18,split_reads2: 11,discordant_mates: 0,coverage1: 729,coverage2: 2270,confidence: high | ||
| PCDHA10--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 5,split_reads2: 16,discordant_mates: 1,coverage1: 787,coverage2: 1019,confidence: high | ||
| PCDHA10--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 5,split_reads2: 16,discordant_mates: 1,coverage1: 787,coverage2: 1019,confidence: high | ||
| PCDHA10--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 5,split_reads2: 16,discordant_mates: 1,coverage1: 787,coverage2: 1019,confidence: high | ||
| ACBD5--ARMC4P1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:27238282#chr10:27281288,reading-frame: .,type: deletion/read-through/3'-3',split_reads1: 4,split_reads2: 15,discordant_mates: 1,coverage1: 187,coverage2: 518,confidence: high | ||
| PIP5K1A--ILF2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:151224279#chr1:153670117,reading-frame: out-of-frame,type: deletion/5'-5',split_reads1: 11,split_reads2: 3,discordant_mates: 0,coverage1: 4419,coverage2: 594,confidence: high | ||
| PCDHA11--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 6,split_reads2: 7,discordant_mates: 0,coverage1: 642,coverage2: 1019,confidence: high | ||
| PCDHA11--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 6,split_reads2: 7,discordant_mates: 0,coverage1: 642,coverage2: 1019,confidence: high | ||
| PCDHA11--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 6,split_reads2: 7,discordant_mates: 0,coverage1: 642,coverage2: 1019,confidence: high |
27 rows