File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/4e345149080e5bb8e580953b55bac7/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (aih-tih-sc-09b6a3-R1_A23WJ53LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/56cdb11e3156f75ff1e6e6198f0933/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/4e345149080e5bb8e580953b55bac7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/4e345149080e5bb8e580953b55bac7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/fc1f99bc07fd425eb7666626bf1ef5/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: aih-tih-sc-09b6a3-R1_A23WJ53LT4_1/abundance.h5
Successfully converted aih-tih-sc-09b6a3-R1_A23WJ53LT4_1/abundance.h5 to aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_kallisto_mqc.tsv
  Sample: aih-tih-sc-09b6a3-R1_A23WJ53LT4_1
  Mean Fragment Length: 118.0 bp
  Median Fragment Length: 109.0 bp
  pct_mito_est_counts: 0.025%
  pct_ribo_est_counts: 1.303%
  pct_hk_est_counts: 0.496%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.051%
  pct_ribo_tpm: 3.942%
  pct_hk_tpm: 0.777%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.018%