.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (aih-tih-sc-1351d2-R1_A23WJ53LT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/6b5afc2f591e2d9b7d3132d854c09f/.command.log
Size: 76.7 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (aih-tih-sc-1351d2-R1_A23WJ53LT4_1)
Attempt
Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/7778d871f750e93966b889bb7a6c96/fi_workdir/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.gtf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/6b5afc2f591e2d9b7d3132d854c09f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/6b5afc2f591e2d9b7d3132d854c09f/.command.run
==> STAGING COMPLETE (3 inputs)

Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file

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|   Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0                      |
|   https://github.com/NBISweden/AGAT                                          |
|   National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se         |
 ------------------------------------------------------------------------------
                                        
                                       
                          ------ Start parsing ------                           
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
	* locus_tag
	* gene_id
=> merge_loci option deactivated
=> Machine information:
	This script is being run by perl v5.32.1
	Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
	Operating system being used: linux 
=> Accessing Ontology
	No ontology accessible from the gff file header!
	We use the SOFA ontology distributed with AGAT:
		/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
	Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
		4 root terms, and 2596 total terms, and 1516 leaf terms
	Filtering ontology:
		We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 3396
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 3396
=> Number of feature type (3rd column): 2
	* Level1: 0 => 
	* level2: 0 => 
	* level3: 2 => exon CDS
	* unknown: 0 => 
=>Check because only level3 features:
 * Number of feature with Parent attribute:0
 * Number of feature with a common attribute:3396
  => Some common attributes and some Parent attributes missing.
  /!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
  see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html 
  /!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote).  see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html 
  !! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
                  ------ End parsing (done in 1 second) ------                  


                           ------ Start checks ------                           
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------

------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------

-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------

--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created: 
ACBD5--ARMC4P1	HAVANA	gene	3489	22515	.	+	.	FI_gene_label "ACBD5^ENSG00000107897.20"  ; ID "ACBD5--ARMC4P1^ACBD5^ENSG00000107897.20"  ; ccdsid "CCDS86078.1"  ; exon_id "ENSE00001468692.1"  ; exon_number 1 ; gene_id "ACBD5--ARMC4P1^ACBD5^ENSG00000107897.20"  ; gene_name ACBD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017854.6"  ; havana_transcript "OTTHUMT00000047314.1"  ; hgnc_id "HGNC:23338"  ; level 2 ; orig_coord_info "chr10,27240319,27240493,-"  ; protein_id "ENSP00000365049.1"  ; tag basic appris_alternative_2 CCDS ; transcript_id "ACBD5--ARMC4P1^ENST00000375888.5"  ; transcript_name "ACBD5-201"  ; transcript_support_level 5 ; transcript_type protein_coding
ACBD5--ARMC4P1	HAVANA	mRNA	3489	22515	.	+	.	FI_gene_label "ACBD5^ENSG00000107897.20"  ; ID "ACBD5--ARMC4P1^ENST00000375888.5"  ; Parent "ACBD5--ARMC4P1^ACBD5^ENSG00000107897.20"  ; ccdsid "CCDS86078.1"  ; exon_id "ENSE00001468692.1"  ; exon_number 1 ; gene_id "ACBD5--ARMC4P1^ACBD5^ENSG00000107897.20"  ; gene_name ACBD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017854.6"  ; havana_transcript "OTTHUMT00000047314.1"  ; hgnc_id "HGNC:23338"  ; level 2 ; orig_coord_info "chr10,27240319,27240493,-"  ; protein_id "ENSP00000365049.1"  ; tag basic appris_alternative_2 CCDS ; transcript_id "ACBD5--ARMC4P1^ENST00000375888.5"  ; transcript_name "ACBD5-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
CREBBP--TRAP1	HAVANA	gene	47098	68430	.	+	.	FI_gene_label "TRAP1^ENSG00000126602.11"  ; ID "CREBBP--TRAP1^TRAP1^ENSG00000126602.11"  ; ccdsid "CCDS10508.1"  ; exon_id "ENSE00002655290.1"  ; exon_number 1 ; gene_id "CREBBP--TRAP1^TRAP1^ENSG00000126602.11"  ; gene_name TRAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129427.4"  ; havana_transcript "OTTHUMT00000251586.3"  ; hgnc_id "HGNC:16264"  ; level 2 ; orig_coord_info "chr16,3717421,3717508,-"  ; protein_id "ENSP00000246957.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CREBBP--TRAP1^ENST00000246957.10"  ; transcript_name "TRAP1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
CREBBP--TRAP1	HAVANA	mRNA	47098	68430	.	+	.	FI_gene_label "TRAP1^ENSG00000126602.11"  ; ID "CREBBP--TRAP1^ENST00000246957.10"  ; Parent "CREBBP--TRAP1^TRAP1^ENSG00000126602.11"  ; ccdsid "CCDS10508.1"  ; exon_id "ENSE00002655290.1"  ; exon_number 1 ; gene_id "CREBBP--TRAP1^TRAP1^ENSG00000126602.11"  ; gene_name TRAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129427.4"  ; havana_transcript "OTTHUMT00000251586.3"  ; hgnc_id "HGNC:16264"  ; level 2 ; orig_coord_info "chr16,3717421,3717508,-"  ; protein_id "ENSP00000246957.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CREBBP--TRAP1^ENST00000246957.10"  ; transcript_name "TRAP1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
CREBBP--TRAP1	HAVANA	gene	1001	44068	.	+	.	FI_gene_label "CREBBP^ENSG00000005339.15"  ; ID "CREBBP--TRAP1^CREBBP^ENSG00000005339.15"  ; ccdsid "CCDS10509.1"  ; exon_id "ENSE00001871332.3"  ; exon_number 1 ; gene_id "CREBBP--TRAP1^CREBBP^ENSG00000005339.15"  ; gene_name CREBBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000129431.7"  ; havana_transcript "OTTHUMT00000251591.3"  ; hgnc_id "HGNC:2348"  ; level 2 ; orig_coord_info "chr16,3879832,3879916,-"  ; protein_id "ENSP00000262367.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CREBBP--TRAP1^ENST00000262367.10"  ; transcript_name "CREBBP-201"  ; transcript_support_level 1 ; transcript_type protein_coding
CREBBP--TRAP1	HAVANA	mRNA	1001	44068	.	+	.	FI_gene_label "CREBBP^ENSG00000005339.15"  ; ID "CREBBP--TRAP1^ENST00000262367.10"  ; Parent "CREBBP--TRAP1^CREBBP^ENSG00000005339.15"  ; ccdsid "CCDS10509.1"  ; exon_id "ENSE00001871332.3"  ; exon_number 1 ; gene_id "CREBBP--TRAP1^CREBBP^ENSG00000005339.15"  ; gene_name CREBBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000129431.7"  ; havana_transcript "OTTHUMT00000251591.3"  ; hgnc_id "HGNC:2348"  ; level 2 ; orig_coord_info "chr16,3879832,3879916,-"  ; protein_id "ENSP00000262367.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CREBBP--TRAP1^ENST00000262367.10"  ; transcript_name "CREBBP-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
ENG--ST6GALNAC6	HAVANA	gene	21177	30106	.	+	.	FI_gene_label "ST6GALNAC6^ENSG00000160408.15"  ; ID "ENG--ST6GALNAC6^ST6GALNAC6^ENSG00000160408.15"  ; exon_id "ENSE00003630060.1"  ; exon_number 2 ; gene_id "ENG--ST6GALNAC6^ST6GALNAC6^ENSG00000160408.15"  ; gene_name ST6GALNAC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020718.4"  ; havana_transcript "OTTHUMT00000054280.1"  ; hgnc_id "HGNC:23364"  ; level 2 ; orig_coord_info "chr9,127897956,127897981,-"  ; protein_id "ENSP00000291839.6"  ; tag basic ; transcript_id "ENG--ST6GALNAC6^ENST00000291839.10"  ; transcript_name "ST6GALNAC6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
ENG--ST6GALNAC6	HAVANA	mRNA	21177	30106	.	+	.	FI_gene_label "ST6GALNAC6^ENSG00000160408.15"  ; ID "ENG--ST6GALNAC6^ENST00000291839.10"  ; Parent "ENG--ST6GALNAC6^ST6GALNAC6^ENSG00000160408.15"  ; exon_id "ENSE00003630060.1"  ; exon_number 2 ; gene_id "ENG--ST6GALNAC6^ST6GALNAC6^ENSG00000160408.15"  ; gene_name ST6GALNAC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020718.4"  ; havana_transcript "OTTHUMT00000054280.1"  ; hgnc_id "HGNC:23364"  ; level 2 ; orig_coord_info "chr9,127897956,127897981,-"  ; protein_id "ENSP00000291839.6"  ; tag basic ; transcript_id "ENG--ST6GALNAC6^ENST00000291839.10"  ; transcript_name "ST6GALNAC6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
ENG--ST6GALNAC6	HAVANA	gene	1023	14697	.	+	.	FI_gene_label "ENG^ENSG00000106991.14"  ; ID "ENG--ST6GALNAC6^ENG^ENSG00000106991.14"  ; ccdsid "CCDS6880.1"  ; exon_id "ENSE00001834314.1"  ; exon_number 1 ; gene_id "ENG--ST6GALNAC6^ENG^ENSG00000106991.14"  ; gene_name ENG ; gene_type protein_coding ; havana_gene "OTTHUMG00000020723.1"  ; havana_transcript "OTTHUMT00000054312.1"  ; hgnc_id "HGNC:3349"  ; level 2 ; orig_coord_info "chr9,127854289,127854355,-"  ; protein_id "ENSP00000341917.3"  ; tag basic appris_alternative_2 CCDS ; transcript_id "ENG--ST6GALNAC6^ENST00000344849.4"  ; transcript_name "ENG-201"  ; transcript_support_level 1 ; transcript_type protein_coding
ENG--ST6GALNAC6	HAVANA	mRNA	1023	14697	.	+	.	FI_gene_label "ENG^ENSG00000106991.14"  ; ID "ENG--ST6GALNAC6^ENST00000344849.4"  ; Parent "ENG--ST6GALNAC6^ENG^ENSG00000106991.14"  ; ccdsid "CCDS6880.1"  ; exon_id "ENSE00001834314.1"  ; exon_number 1 ; gene_id "ENG--ST6GALNAC6^ENG^ENSG00000106991.14"  ; gene_name ENG ; gene_type protein_coding ; havana_gene "OTTHUMG00000020723.1"  ; havana_transcript "OTTHUMT00000054312.1"  ; hgnc_id "HGNC:3349"  ; level 2 ; orig_coord_info "chr9,127854289,127854355,-"  ; protein_id "ENSP00000341917.3"  ; tag basic appris_alternative_2 CCDS ; transcript_id "ENG--ST6GALNAC6^ENST00000344849.4"  ; transcript_name "ENG-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
ILF2--VPS72	HAVANA	gene	13527	18986	.	+	.	FI_gene_label "VPS72^ENSG00000163159.14"  ; ID "ILF2--VPS72^VPS72^ENSG00000163159.14"  ; ccdsid "CCDS59201.1"  ; exon_id "ENSE00001932993.1"  ; exon_number 1 ; gene_id "ILF2--VPS72^VPS72^ENSG00000163159.14"  ; gene_name VPS72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012345.10"  ; havana_transcript "OTTHUMT00000034394.3"  ; hgnc_id "HGNC:11644"  ; level 1 ; orig_coord_info "chr1,151190005,151190121,-"  ; protein_id "ENSP00000346464.4"  ; tag mRNA_start_NF exp_conf CCDS ; transcript_id "ILF2--VPS72^ENST00000354473.4"  ; transcript_name "VPS72-201"  ; transcript_support_level 3 ; transcript_type protein_coding
ILF2--VPS72	HAVANA	mRNA	13527	18986	.	+	.	FI_gene_label "VPS72^ENSG00000163159.14"  ; ID "ILF2--VPS72^ENST00000354473.4"  ; Parent "ILF2--VPS72^VPS72^ENSG00000163159.14"  ; ccdsid "CCDS59201.1"  ; exon_id "ENSE00001932993.1"  ; exon_number 1 ; gene_id "ILF2--VPS72^VPS72^ENSG00000163159.14"  ; gene_name VPS72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012345.10"  ; havana_transcript "OTTHUMT00000034394.3"  ; hgnc_id "HGNC:11644"  ; level 1 ; orig_coord_info "chr1,151190005,151190121,-"  ; protein_id "ENSP00000346464.4"  ; tag mRNA_start_NF exp_conf CCDS ; transcript_id "ILF2--VPS72^ENST00000354473.4"  ; transcript_name "VPS72-201"  ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created: 
ILF2--VPS72	HAVANA	gene	1036	9428	.	+	.	FI_gene_label "ILF2^ENSG00000143621.17"  ; ID "ILF2--VPS72^ILF2^ENSG00000143621.17"  ; ccdsid "CCDS1050.1"  ; exon_id "ENSE00001447747.4"  ; exon_number 1 ; gene_id "ILF2--VPS72^ILF2^ENSG00000143621.17"  ; gene_name ILF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037087.2"  ; havana_transcript "OTTHUMT00000090040.2"  ; hgnc_id "HGNC:6037"  ; level 2 ; orig_coord_info "chr1,153670918,153670922,-"  ; protein_id "ENSP00000355011.4"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ILF2--VPS72^ENST00000361891.9"  ; transcript_name "ILF2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
ILF2--VPS72	HAVANA	mRNA	1036	9428	.	+	.	FI_gene_label "ILF2^ENSG00000143621.17"  ; ID "ILF2--VPS72^ENST00000361891.9"  ; Parent "ILF2--VPS72^ILF2^ENSG00000143621.17"  ; ccdsid "CCDS1050.1"  ; exon_id "ENSE00001447747.4"  ; exon_number 1 ; gene_id "ILF2--VPS72^ILF2^ENSG00000143621.17"  ; gene_name ILF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037087.2"  ; havana_transcript "OTTHUMT00000090040.2"  ; hgnc_id "HGNC:6037"  ; level 2 ; orig_coord_info "chr1,153670918,153670922,-"  ; protein_id "ENSP00000355011.4"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ILF2--VPS72^ENST00000361891.9"  ; transcript_name "ILF2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
IMMP2L--DOCK4	HAVANA	gene	1001	15751	.	+	.	FI_gene_label "IMMP2L^ENSG00000184903.10"  ; ID "IMMP2L--DOCK4^IMMP2L^ENSG00000184903.10"  ; ccdsid "CCDS5753.1"  ; exon_id "ENSE00003587841.1"  ; exon_number 3 ; gene_id "IMMP2L--DOCK4^IMMP2L^ENSG00000184903.10"  ; gene_name IMMP2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000155023.9"  ; havana_transcript "OTTHUMT00000338174.3"  ; hgnc_id "HGNC:14598"  ; level 2 ; orig_coord_info "chr7,111521313,111521447,-"  ; protein_id "ENSP00000329553.3"  ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "IMMP2L--DOCK4^ENST00000331762.7"  ; transcript_name "IMMP2L-201"  ; transcript_support_level 1 ; transcript_type protein_coding
IMMP2L--DOCK4	HAVANA	mRNA	1001	15751	.	+	.	FI_gene_label "IMMP2L^ENSG00000184903.10"  ; ID "IMMP2L--DOCK4^ENST00000331762.7"  ; Parent "IMMP2L--DOCK4^IMMP2L^ENSG00000184903.10"  ; ccdsid "CCDS5753.1"  ; exon_id "ENSE00003587841.1"  ; exon_number 3 ; gene_id "IMMP2L--DOCK4^IMMP2L^ENSG00000184903.10"  ; gene_name IMMP2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000155023.9"  ; havana_transcript "OTTHUMT00000338174.3"  ; hgnc_id "HGNC:14598"  ; level 2 ; orig_coord_info "chr7,111521313,111521447,-"  ; protein_id "ENSP00000329553.3"  ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "IMMP2L--DOCK4^ENST00000331762.7"  ; transcript_name "IMMP2L-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
IMMP2L--DOCK4	HAVANA	gene	56628	61882	.	+	.	FI_gene_label "DOCK4^ENSG00000128512.23"  ; ID "IMMP2L--DOCK4^DOCK4^ENSG00000128512.23"  ; exon_id "ENSE00001757332.1"  ; exon_number 1 ; gene_id "IMMP2L--DOCK4^DOCK4^ENSG00000128512.23"  ; gene_name DOCK4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155077.9"  ; havana_transcript "OTTHUMT00000339160.2"  ; hgnc_id "HGNC:19192"  ; level 2 ; orig_coord_info "chr7,111788662,111788756,-"  ; protein_id "ENSP00000403504.1"  ; tag cds_end_NF mRNA_end_NF CAGE_supported_TSS ; transcript_id "IMMP2L--DOCK4^ENST00000417165.1"  ; transcript_name "DOCK4-201"  ; transcript_support_level 5 ; transcript_type protein_coding
IMMP2L--DOCK4	HAVANA	mRNA	56628	61882	.	+	.	FI_gene_label "DOCK4^ENSG00000128512.23"  ; ID "IMMP2L--DOCK4^ENST00000417165.1"  ; Parent "IMMP2L--DOCK4^DOCK4^ENSG00000128512.23"  ; exon_id "ENSE00001757332.1"  ; exon_number 1 ; gene_id "IMMP2L--DOCK4^DOCK4^ENSG00000128512.23"  ; gene_name DOCK4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155077.9"  ; havana_transcript "OTTHUMT00000339160.2"  ; hgnc_id "HGNC:19192"  ; level 2 ; orig_coord_info "chr7,111788662,111788756,-"  ; protein_id "ENSP00000403504.1"  ; tag cds_end_NF mRNA_end_NF CAGE_supported_TSS ; transcript_id "IMMP2L--DOCK4^ENST00000417165.1"  ; transcript_name "DOCK4-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
LYST--NID1	HAVANA	gene	73553	97565	.	+	.	FI_gene_label "NID1^ENSG00000116962.15"  ; ID "LYST--NID1^NID1^ENSG00000116962.15"  ; ccdsid "CCDS1608.1"  ; exon_id "ENSE00001935339.2"  ; exon_number 1 ; gene_id "LYST--NID1^NID1^ENSG00000116962.15"  ; gene_name NID1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040071.3"  ; havana_transcript "OTTHUMT00000096647.3"  ; hgnc_id "HGNC:7821"  ; level 2 ; orig_coord_info "chr1,236064855,236065079,-"  ; protein_id "ENSP00000264187.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LYST--NID1^ENST00000264187.7"  ; transcript_name "NID1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
LYST--NID1	HAVANA	mRNA	73553	97565	.	+	.	FI_gene_label "NID1^ENSG00000116962.15"  ; ID "LYST--NID1^ENST00000264187.7"  ; Parent "LYST--NID1^NID1^ENSG00000116962.15"  ; ccdsid "CCDS1608.1"  ; exon_id "ENSE00001935339.2"  ; exon_number 1 ; gene_id "LYST--NID1^NID1^ENSG00000116962.15"  ; gene_name NID1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040071.3"  ; havana_transcript "OTTHUMT00000096647.3"  ; hgnc_id "HGNC:7821"  ; level 2 ; orig_coord_info "chr1,236064855,236065079,-"  ; protein_id "ENSP00000264187.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LYST--NID1^ENST00000264187.7"  ; transcript_name "NID1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
LYST--NID1	HAVANA	gene	2473	70533	.	+	.	FI_gene_label "LYST^ENSG00000143669.14"  ; ID "LYST--NID1^LYST^ENSG00000143669.14"  ; ccdsid "CCDS31062.1"  ; exon_id "ENSE00003506340.1"  ; exon_number 3 ; gene_id "LYST--NID1^LYST^ENSG00000143669.14"  ; gene_name LYST ; gene_type protein_coding ; havana_gene "OTTHUMG00000040527.12"  ; havana_transcript "OTTHUMT00000097533.7"  ; hgnc_id "HGNC:1968"  ; level 2 ; orig_coord_info "chr1,235830226,235830417,-"  ; protein_id "ENSP00000374443.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LYST--NID1^ENST00000389793.7"  ; transcript_name "LYST-201"  ; transcript_support_level 5 ; transcript_type protein_coding
LYST--NID1	HAVANA	mRNA	2473	70533	.	+	.	FI_gene_label "LYST^ENSG00000143669.14"  ; ID "LYST--NID1^ENST00000389793.7"  ; Parent "LYST--NID1^LYST^ENSG00000143669.14"  ; ccdsid "CCDS31062.1"  ; exon_id "ENSE00003506340.1"  ; exon_number 3 ; gene_id "LYST--NID1^LYST^ENSG00000143669.14"  ; gene_name LYST ; gene_type protein_coding ; havana_gene "OTTHUMG00000040527.12"  ; havana_transcript "OTTHUMT00000097533.7"  ; hgnc_id "HGNC:1968"  ; level 2 ; orig_coord_info "chr1,235830226,235830417,-"  ; protein_id "ENSP00000374443.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LYST--NID1^ENST00000389793.7"  ; transcript_name "LYST-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHA13	HAVANA	gene	16359	24799	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13	HAVANA	mRNA	16359	24799	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA10--PCDHA13^ENST00000289272.3"  ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHA13	HAVANA	gene	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13	HAVANA	mRNA	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHA13^ENST00000562220.2"  ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHAC1	HAVANA	gene	16359	26374	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1	HAVANA	mRNA	16359	26374	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA10--PCDHAC1^ENST00000253807.3"  ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHAC1	HAVANA	gene	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1	HAVANA	mRNA	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHAC1^ENST00000562220.2"  ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHAC2	HAVANA	gene	16365	27100	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2	HAVANA	mRNA	16365	27100	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA10--PCDHAC2^ENST00000289269.7"  ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA10--PCDHAC2	HAVANA	gene	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2	HAVANA	mRNA	1001	13358	.	+	.	FI_gene_label "PCDHA10^ENSG00000250120.8"  ; ID "PCDHA10--PCDHAC2^ENST00000562220.2"  ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8"  ; ccdsid "CCDS75325.1"  ; exon_id "ENSE00002616704.2"  ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8"  ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5"  ; havana_transcript "OTTHUMT00000477562.1"  ; hgnc_id "HGNC:8664"  ; level 2 ; orig_coord_info "chr5,140856049,140858580,+"  ; protein_id "ENSP00000478748.1"  ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2"  ; transcript_name "PCDHA10-203"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHA13	HAVANA	gene	7419	15859	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13	HAVANA	mRNA	7419	15859	.	+	.	FI_gene_label "PCDHA13^ENSG00000239389.8"  ; ID "PCDHA11--PCDHA13^ENST00000289272.3"  ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8"  ; ccdsid "CCDS4240.1"  ; exon_id "ENSE00001038419.2"  ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8"  ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4"  ; havana_transcript "OTTHUMT00000335000.2"  ; hgnc_id "HGNC:8667"  ; level 2 ; orig_coord_info "chr5,140882269,140884662,+"  ; protein_id "ENSP00000289272.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3"  ; transcript_name "PCDHA13-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHA13	HAVANA	gene	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13	HAVANA	mRNA	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHA13^ENST00000616325.1"  ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHAC1	HAVANA	gene	7419	17434	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1	HAVANA	mRNA	7419	17434	.	+	.	FI_gene_label "PCDHAC1^ENSG00000248383.5"  ; ID "PCDHA11--PCDHAC1^ENST00000253807.3"  ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; ccdsid "CCDS4241.1"  ; exon_id "ENSE00001085780.5"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5"  ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3"  ; havana_transcript "OTTHUMT00000251798.1"  ; hgnc_id "HGNC:8676"  ; level 2 ; orig_coord_info "chr5,140926893,140929325,+"  ; protein_id "ENSP00000253807.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3"  ; transcript_name "PCDHAC1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHAC1	HAVANA	gene	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1	HAVANA	mRNA	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHAC1^ENST00000616325.1"  ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHAC2	HAVANA	gene	7425	18160	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2	HAVANA	mRNA	7425	18160	.	+	.	FI_gene_label "PCDHAC2^ENSG00000243232.6"  ; ID "PCDHA11--PCDHAC2^ENST00000289269.7"  ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; ccdsid "CCDS4242.1"  ; exon_id "ENSE00001038414.4"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6"  ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7"  ; havana_transcript "OTTHUMT00000251802.4"  ; hgnc_id "HGNC:8677"  ; level 2 ; orig_coord_info "chr5,140966767,140969331,+"  ; protein_id "ENSP00000289269.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7"  ; transcript_name "PCDHAC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHA11--PCDHAC2	HAVANA	gene	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2	HAVANA	mRNA	1001	4418	.	+	.	FI_gene_label "PCDHA11^ENSG00000249158.7"  ; ID "PCDHA11--PCDHAC2^ENST00000616325.1"  ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7"  ; ccdsid "CCDS75326.1"  ; exon_id "ENSE00003719125.1"  ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7"  ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3"  ; havana_transcript "OTTHUMT00000477577.1"  ; hgnc_id "HGNC:8665"  ; level 2 ; orig_coord_info "chr5,140869104,140871533,+"  ; protein_id "ENSP00000482503.1"  ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1"  ; transcript_name "PCDHA11-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA10	HAVANA	gene	6778	16231	.	+	.	FI_gene_label "PCDHGA10^ENSG00000253846.2"  ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; ccdsid "CCDS47292.1"  ; exon_id "ENSE00001792208.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2"  ; havana_transcript "OTTHUMT00000374747.1"  ; hgnc_id "HGNC:8697"  ; level 2 ; orig_coord_info "chr5,141413176,141415611,+"  ; protein_id "ENSP00000381611.2"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2"  ; transcript_name "PCDHGA10-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10	HAVANA	mRNA	6778	16231	.	+	.	FI_gene_label "PCDHGA10^ENSG00000253846.2"  ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2"  ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; ccdsid "CCDS47292.1"  ; exon_id "ENSE00001792208.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2"  ; havana_transcript "OTTHUMT00000374747.1"  ; hgnc_id "HGNC:8697"  ; level 2 ; orig_coord_info "chr5,141413176,141415611,+"  ; protein_id "ENSP00000381611.2"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2"  ; transcript_name "PCDHGA10-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA10	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA11	HAVANA	gene	6593	15398	.	+	.	FI_gene_label "PCDHGA11^ENSG00000253873.6"  ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; ccdsid "CCDS47294.1"  ; exon_id "ENSE00001533810.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3"  ; havana_transcript "OTTHUMT00000376974.3"  ; hgnc_id "HGNC:8698"  ; level 2 ; orig_coord_info "chr5,141421228,141423660,+"  ; protein_id "ENSP00000381589.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7"  ; transcript_name "PCDHGA11-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11	HAVANA	mRNA	6593	15398	.	+	.	FI_gene_label "PCDHGA11^ENSG00000253873.6"  ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7"  ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; ccdsid "CCDS47294.1"  ; exon_id "ENSE00001533810.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3"  ; havana_transcript "OTTHUMT00000376974.3"  ; hgnc_id "HGNC:8698"  ; level 2 ; orig_coord_info "chr5,141421228,141423660,+"  ; protein_id "ENSP00000381589.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7"  ; transcript_name "PCDHGA11-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA11	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA12	HAVANA	gene	6589	14481	.	+	.	FI_gene_label "PCDHGA12^ENSG00000253159.3"  ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; ccdsid "CCDS4260.1"  ; exon_id "ENSE00000814269.5"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6"  ; havana_transcript "OTTHUMT00000251806.3"  ; hgnc_id "HGNC:8699"  ; level 2 ; orig_coord_info "chr5,141430760,141433183,+"  ; protein_id "ENSP00000252085.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4"  ; transcript_name "PCDHGA12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12	HAVANA	mRNA	6589	14481	.	+	.	FI_gene_label "PCDHGA12^ENSG00000253159.3"  ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4"  ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; ccdsid "CCDS4260.1"  ; exon_id "ENSE00000814269.5"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6"  ; havana_transcript "OTTHUMT00000251806.3"  ; hgnc_id "HGNC:8699"  ; level 2 ; orig_coord_info "chr5,141430760,141433183,+"  ; protein_id "ENSP00000252085.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4"  ; transcript_name "PCDHGA12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA12	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA8	HAVANA	gene	9065	18245	.	+	.	FI_gene_label "PCDHGA8^ENSG00000253767.3"  ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; ccdsid "CCDS47291.1"  ; exon_id "ENSE00001533882.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2"  ; havana_transcript "OTTHUMT00000376972.1"  ; hgnc_id "HGNC:8706"  ; level 2 ; orig_coord_info "chr5,141392814,141395237,+"  ; protein_id "ENSP00000381605.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3"  ; transcript_name "PCDHGA8-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8	HAVANA	mRNA	9065	18245	.	+	.	FI_gene_label "PCDHGA8^ENSG00000253767.3"  ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3"  ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; ccdsid "CCDS47291.1"  ; exon_id "ENSE00001533882.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2"  ; havana_transcript "OTTHUMT00000376972.1"  ; hgnc_id "HGNC:8706"  ; level 2 ; orig_coord_info "chr5,141392814,141395237,+"  ; protein_id "ENSP00000381605.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3"  ; transcript_name "PCDHGA8-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA8	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA9	HAVANA	gene	6610	14337	.	+	.	FI_gene_label "PCDHGA9^ENSG00000261934.2"  ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; ccdsid "CCDS58981.1"  ; exon_id "ENSE00002639131.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2"  ; havana_transcript "OTTHUMT00000437105.1"  ; hgnc_id "HGNC:8707"  ; level 2 ; orig_coord_info "chr5,141402953,141405376,+"  ; protein_id "ENSP00000460274.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1"  ; transcript_name "PCDHGA9-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9	HAVANA	mRNA	6610	14337	.	+	.	FI_gene_label "PCDHGA9^ENSG00000261934.2"  ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1"  ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; ccdsid "CCDS58981.1"  ; exon_id "ENSE00002639131.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2"  ; havana_transcript "OTTHUMT00000437105.1"  ; hgnc_id "HGNC:8707"  ; level 2 ; orig_coord_info "chr5,141402953,141405376,+"  ; protein_id "ENSP00000460274.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1"  ; transcript_name "PCDHGA9-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA9	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB6	HAVANA	gene	6771	16370	.	+	.	FI_gene_label "PCDHGB6^ENSG00000253305.2"  ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; ccdsid "CCDS54929.1"  ; exon_id "ENSE00002122685.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2"  ; havana_transcript "OTTHUMT00000374746.1"  ; hgnc_id "HGNC:8713"  ; level 2 ; orig_coord_info "chr5,141408203,141410620,+"  ; protein_id "ENSP00000428603.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1"  ; transcript_name "PCDHGB6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6	HAVANA	mRNA	6771	16370	.	+	.	FI_gene_label "PCDHGB6^ENSG00000253305.2"  ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1"  ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; ccdsid "CCDS54929.1"  ; exon_id "ENSE00002122685.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2"  ; havana_transcript "OTTHUMT00000374746.1"  ; hgnc_id "HGNC:8713"  ; level 2 ; orig_coord_info "chr5,141408203,141410620,+"  ; protein_id "ENSP00000428603.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1"  ; transcript_name "PCDHGB6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB6	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB7	HAVANA	gene	6621	14550	.	+	.	FI_gene_label "PCDHGB7^ENSG00000254122.3"  ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; ccdsid "CCDS47293.1"  ; exon_id "ENSE00001533845.4"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2"  ; havana_transcript "OTTHUMT00000376973.2"  ; hgnc_id "HGNC:8714"  ; level 2 ; orig_coord_info "chr5,141417860,141420274,+"  ; protein_id "ENSP00000381594.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4"  ; transcript_name "PCDHGB7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7	HAVANA	mRNA	6621	14550	.	+	.	FI_gene_label "PCDHGB7^ENSG00000254122.3"  ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4"  ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; ccdsid "CCDS47293.1"  ; exon_id "ENSE00001533845.4"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2"  ; havana_transcript "OTTHUMT00000376973.2"  ; hgnc_id "HGNC:8714"  ; level 2 ; orig_coord_info "chr5,141417860,141420274,+"  ; protein_id "ENSP00000381594.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4"  ; transcript_name "PCDHGB7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB7	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC3	HAVANA	gene	6608	16794	.	+	.	FI_gene_label "PCDHGC3^ENSG00000240184.7"  ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; ccdsid "CCDS4261.1"  ; exon_id "ENSE00001199459.7"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8"  ; havana_transcript "OTTHUMT00000251808.5"  ; hgnc_id "HGNC:8716"  ; level 2 ; orig_coord_info "chr5,141476117,141478546,+"  ; protein_id "ENSP00000312070.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5"  ; transcript_name "PCDHGC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3	HAVANA	mRNA	6608	16794	.	+	.	FI_gene_label "PCDHGC3^ENSG00000240184.7"  ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5"  ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; ccdsid "CCDS4261.1"  ; exon_id "ENSE00001199459.7"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8"  ; havana_transcript "OTTHUMT00000251808.5"  ; hgnc_id "HGNC:8716"  ; level 2 ; orig_coord_info "chr5,141476117,141478546,+"  ; protein_id "ENSP00000312070.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5"  ; transcript_name "PCDHGC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC3	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC4	HAVANA	gene	6766	14562	.	+	.	FI_gene_label "PCDHGC4^ENSG00000242419.5"  ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; ccdsid "CCDS4262.1"  ; exon_id "ENSE00001162305.2"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4"  ; havana_transcript "OTTHUMT00000251820.2"  ; hgnc_id "HGNC:8717"  ; level 2 ; orig_coord_info "chr5,141485174,141487615,+"  ; protein_id "ENSP00000306918.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1"  ; transcript_name "PCDHGC4-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4	HAVANA	mRNA	6766	14562	.	+	.	FI_gene_label "PCDHGC4^ENSG00000242419.5"  ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1"  ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; ccdsid "CCDS4262.1"  ; exon_id "ENSE00001162305.2"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4"  ; havana_transcript "OTTHUMT00000251820.2"  ; hgnc_id "HGNC:8717"  ; level 2 ; orig_coord_info "chr5,141485174,141487615,+"  ; protein_id "ENSP00000306918.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1"  ; transcript_name "PCDHGC4-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC4	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC5	HAVANA	gene	6589	14614	.	+	.	FI_gene_label "PCDHGC5^ENSG00000240764.4"  ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; ccdsid "CCDS4263.1"  ; exon_id "ENSE00000766474.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2"  ; havana_transcript "OTTHUMT00000251819.2"  ; hgnc_id "HGNC:8718"  ; level 2 ; orig_coord_info "chr5,141489241,141491700,+"  ; protein_id "ENSP00000252087.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3"  ; transcript_name "PCDHGC5-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5	HAVANA	mRNA	6589	14614	.	+	.	FI_gene_label "PCDHGC5^ENSG00000240764.4"  ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3"  ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; ccdsid "CCDS4263.1"  ; exon_id "ENSE00000766474.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2"  ; havana_transcript "OTTHUMT00000251819.2"  ; hgnc_id "HGNC:8718"  ; level 2 ; orig_coord_info "chr5,141489241,141491700,+"  ; protein_id "ENSP00000252087.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3"  ; transcript_name "PCDHGC5-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC5	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PIP5K1A--ILF2	HAVANA	gene	1603	20185	.	+	.	FI_gene_label "PIP5K1A^ENSG00000143398.20"  ; ID "PIP5K1A--ILF2^PIP5K1A^ENSG00000143398.20"  ; ccdsid "CCDS990.1"  ; exon_id "ENSE00001954901.1"  ; exon_number 1 ; gene_id "PIP5K1A--ILF2^PIP5K1A^ENSG00000143398.20"  ; gene_name PIP5K1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000012351.22"  ; havana_transcript "OTTHUMT00000034424.2"  ; hgnc_id "HGNC:8994"  ; level 2 ; orig_coord_info "chr1,151198997,151199081,+"  ; protein_id "ENSP00000271663.7"  ; tag mRNA_start_NF appris_alternative_2 CCDS ; transcript_id "PIP5K1A--ILF2^ENST00000349792.9"  ; transcript_name "PIP5K1A-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PIP5K1A--ILF2	HAVANA	mRNA	1603	20185	.	+	.	FI_gene_label "PIP5K1A^ENSG00000143398.20"  ; ID "PIP5K1A--ILF2^ENST00000349792.9"  ; Parent "PIP5K1A--ILF2^PIP5K1A^ENSG00000143398.20"  ; ccdsid "CCDS990.1"  ; exon_id "ENSE00001954901.1"  ; exon_number 1 ; gene_id "PIP5K1A--ILF2^PIP5K1A^ENSG00000143398.20"  ; gene_name PIP5K1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000012351.22"  ; havana_transcript "OTTHUMT00000034424.2"  ; hgnc_id "HGNC:8994"  ; level 2 ; orig_coord_info "chr1,151198997,151199081,+"  ; protein_id "ENSP00000271663.7"  ; tag mRNA_start_NF appris_alternative_2 CCDS ; transcript_id "PIP5K1A--ILF2^ENST00000349792.9"  ; transcript_name "PIP5K1A-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PIP5K1A--ILF2	HAVANA	gene	23221	31613	.	+	.	FI_gene_label "ILF2^ENSG00000143621.17"  ; ID "PIP5K1A--ILF2^ILF2^ENSG00000143621.17"  ; ccdsid "CCDS1050.1"  ; exon_id "ENSE00001447747.4"  ; exon_number 1 ; gene_id "PIP5K1A--ILF2^ILF2^ENSG00000143621.17"  ; gene_name ILF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037087.2"  ; havana_transcript "OTTHUMT00000090040.2"  ; hgnc_id "HGNC:6037"  ; level 2 ; orig_coord_info "chr1,153670918,153670922,-"  ; protein_id "ENSP00000355011.4"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PIP5K1A--ILF2^ENST00000361891.9"  ; transcript_name "ILF2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PIP5K1A--ILF2	HAVANA	mRNA	23221	31613	.	+	.	FI_gene_label "ILF2^ENSG00000143621.17"  ; ID "PIP5K1A--ILF2^ENST00000361891.9"  ; Parent "PIP5K1A--ILF2^ILF2^ENSG00000143621.17"  ; ccdsid "CCDS1050.1"  ; exon_id "ENSE00001447747.4"  ; exon_number 1 ; gene_id "PIP5K1A--ILF2^ILF2^ENSG00000143621.17"  ; gene_name ILF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037087.2"  ; havana_transcript "OTTHUMT00000090040.2"  ; hgnc_id "HGNC:6037"  ; level 2 ; orig_coord_info "chr1,153670918,153670922,-"  ; protein_id "ENSP00000355011.4"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PIP5K1A--ILF2^ENST00000361891.9"  ; transcript_name "ILF2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
RBM14--RBM4B	HAVANA	gene	15007	22557	.	+	.	FI_gene_label "RBM4B^ENSG00000173914.12"  ; ID "RBM14--RBM4B^RBM4B^ENSG00000173914.12"  ; ccdsid "CCDS8149.1"  ; exon_id "ENSE00002463386.1"  ; exon_number 2 ; gene_id "RBM14--RBM4B^RBM4B^ENSG00000173914.12"  ; gene_name RBM4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167243.4"  ; havana_transcript "OTTHUMT00000393852.2"  ; hgnc_id "HGNC:28842"  ; level 2 ; orig_coord_info "chr11,66676668,66677079,-"  ; protein_id "ENSP00000310471.4"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4B^ENST00000310046.9"  ; transcript_name "RBM4B-201"  ; transcript_support_level 1 ; transcript_type protein_coding
RBM14--RBM4B	HAVANA	mRNA	15007	22557	.	+	.	FI_gene_label "RBM4B^ENSG00000173914.12"  ; ID "RBM14--RBM4B^ENST00000310046.9"  ; Parent "RBM14--RBM4B^RBM4B^ENSG00000173914.12"  ; ccdsid "CCDS8149.1"  ; exon_id "ENSE00002463386.1"  ; exon_number 2 ; gene_id "RBM14--RBM4B^RBM4B^ENSG00000173914.12"  ; gene_name RBM4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167243.4"  ; havana_transcript "OTTHUMT00000393852.2"  ; hgnc_id "HGNC:28842"  ; level 2 ; orig_coord_info "chr11,66676668,66677079,-"  ; protein_id "ENSP00000310471.4"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4B^ENST00000310046.9"  ; transcript_name "RBM4B-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
RBM14--RBM4B	HAVANA	gene	1005	12006	.	+	.	FI_gene_label "RBM14^ENSG00000239306.5"  ; ID "RBM14--RBM4B^RBM14^ENSG00000239306.5"  ; ccdsid "CCDS8147.1"  ; exon_id "ENSE00003902856.1"  ; exon_number 1 ; gene_id "RBM14--RBM4B^RBM14^ENSG00000239306.5"  ; gene_name RBM14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140380.5"  ; havana_transcript "OTTHUMT00000277128.1"  ; hgnc_id "HGNC:14219"  ; level 2 ; orig_coord_info "chr11,66616721,66617057,+"  ; protein_id "ENSP00000311747.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4B^ENST00000310137.5"  ; transcript_name "RBM14-201"  ; transcript_support_level 1 ; transcript_type protein_coding
RBM14--RBM4B	HAVANA	mRNA	1005	12006	.	+	.	FI_gene_label "RBM14^ENSG00000239306.5"  ; ID "RBM14--RBM4B^ENST00000310137.5"  ; Parent "RBM14--RBM4B^RBM14^ENSG00000239306.5"  ; ccdsid "CCDS8147.1"  ; exon_id "ENSE00003902856.1"  ; exon_number 1 ; gene_id "RBM14--RBM4B^RBM14^ENSG00000239306.5"  ; gene_name RBM14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140380.5"  ; havana_transcript "OTTHUMT00000277128.1"  ; hgnc_id "HGNC:14219"  ; level 2 ; orig_coord_info "chr11,66616721,66617057,+"  ; protein_id "ENSP00000311747.5"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4B^ENST00000310137.5"  ; transcript_name "RBM14-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
TLK2--AC240565.1	HAVANA	gene	4784	35054	.	+	.	FI_gene_label "TLK2^ENSG00000146872.18"  ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; ccdsid "CCDS62283.1"  ; exon_id "ENSE00003568961.1"  ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3"  ; havana_transcript "OTTHUMT00000445140.1"  ; hgnc_id "HGNC:11842"  ; level 2 ; orig_coord_info "chr17,62481126,62481206,+"  ; protein_id "ENSP00000316512.9"  ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13"  ; transcript_name "TLK2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1	HAVANA	mRNA	4784	35054	.	+	.	FI_gene_label "TLK2^ENSG00000146872.18"  ; ID "TLK2--AC240565.1^ENST00000326270.13"  ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; ccdsid "CCDS62283.1"  ; exon_id "ENSE00003568961.1"  ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3"  ; havana_transcript "OTTHUMT00000445140.1"  ; hgnc_id "HGNC:11842"  ; level 2 ; orig_coord_info "chr17,62481126,62481206,+"  ; protein_id "ENSP00000316512.9"  ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13"  ; transcript_name "TLK2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
ACBD5--ARMC4P1	HAVANA	gene	35566	39277	.	+	.	FI_gene_label "ARMC4P1^ENSG00000238021.6"  ; ID "ACBD5--ARMC4P1^ARMC4P1^ENSG00000238021.6"  ; exon_id "ENSE00002650123.1"  ; exon_number 1 ; gene_id "ACBD5--ARMC4P1^ARMC4P1^ENSG00000238021.6"  ; gene_name ARMC4P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000017856.2"  ; havana_transcript "OTTHUMT00000047321.2"  ; hgnc_id "HGNC:44937"  ; level 2 ; ont "PGO:0000005"  "PGO:0000019"  ; orig_coord_info "chr10,27262957,27263214,+"  ; tag basic ; transcript_id "ACBD5--ARMC4P1^ENST00000438905.2"  ; transcript_name "ARMC4P1-201"  ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
ACBD5--ARMC4P1	HAVANA	RNA	35566	39277	.	+	.	FI_gene_label "ARMC4P1^ENSG00000238021.6"  ; ID "ACBD5--ARMC4P1^ENST00000438905.2"  ; Parent "ACBD5--ARMC4P1^ARMC4P1^ENSG00000238021.6"  ; exon_id "ENSE00002650123.1"  ; exon_number 1 ; gene_id "ACBD5--ARMC4P1^ARMC4P1^ENSG00000238021.6"  ; gene_name ARMC4P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000017856.2"  ; havana_transcript "OTTHUMT00000047321.2"  ; hgnc_id "HGNC:44937"  ; level 2 ; ont "PGO:0000005"  "PGO:0000019"  ; orig_coord_info "chr10,27262957,27263214,+"  ; tag basic ; transcript_id "ACBD5--ARMC4P1^ENST00000438905.2"  ; transcript_name "ARMC4P1-201"  ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created: 
TLK2--AC240565.1	HAVANA	gene	40046	48301	.	+	.	FI_gene_label "AC240565.1^ENSG00000280136.2"  ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; exon_id "ENSE00003756821.1"  ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; gene_name "AC240565.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2"  ; havana_transcript "OTTHUMT00000479189.2"  ; level 2 ; orig_coord_info "chr17,118383,118578,-"  ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2"  ; transcript_name "AC240565.1-201"  ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1	HAVANA	RNA	40046	48301	.	+	.	FI_gene_label "AC240565.1^ENSG00000280136.2"  ; ID "TLK2--AC240565.1^ENST00000624936.2"  ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; exon_id "ENSE00003756821.1"  ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; gene_name "AC240565.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2"  ; havana_transcript "OTTHUMT00000479189.2"  ; level 2 ; orig_coord_info "chr17,118383,118578,-"  ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2"  ; transcript_name "AC240565.1-201"  ; transcript_support_level 5 ; transcript_type lncRNA
264 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------

--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------

--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------

------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------

------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------

----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------

----------------------------- Check10: check utrs ------------------------------
484 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------

------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 1 seconds -------------------------------

------------------------ Check12: all level1 locations -------------------------
We fixed 25 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------

---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
                  ------ End checks (done in 1 second) ------                   


GFF3 file parsed