Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 7944
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 7944
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:7944
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 1 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACADM--JAK1 HAVANA gene 32806 65392 . + . FI_gene_label "JAK1^ENSG00000162434.13" ; ID "ACADM--JAK1^JAK1^ENSG00000162434.13" ; ccdsid "CCDS41346.1" ; exon_id "ENSE00001454262.1" ; exon_number 2 ; gene_id "ACADM--JAK1^JAK1^ENSG00000162434.13" ; gene_name JAK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009310.7" ; havana_transcript "OTTHUMT00000025791.2" ; hgnc_id "HGNC:6190" ; level 2 ; orig_coord_info "chr1,64886259,64886264,-" ; protein_id "ENSP00000343204.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACADM--JAK1^ENST00000342505.5" ; transcript_name "JAK1-201" ; transcript_support_level 5 ; transcript_type protein_coding
ACADM--JAK1 HAVANA mRNA 32806 65392 . + . FI_gene_label "JAK1^ENSG00000162434.13" ; ID "ACADM--JAK1^ENST00000342505.5" ; Parent "ACADM--JAK1^JAK1^ENSG00000162434.13" ; ccdsid "CCDS41346.1" ; exon_id "ENSE00001454262.1" ; exon_number 2 ; gene_id "ACADM--JAK1^JAK1^ENSG00000162434.13" ; gene_name JAK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009310.7" ; havana_transcript "OTTHUMT00000025791.2" ; hgnc_id "HGNC:6190" ; level 2 ; orig_coord_info "chr1,64886259,64886264,-" ; protein_id "ENSP00000343204.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACADM--JAK1^ENST00000342505.5" ; transcript_name "JAK1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ACADM--JAK1 HAVANA gene 1279 22082 . + . FI_gene_label "ACADM^ENSG00000117054.15" ; ID "ACADM--JAK1^ACADM^ENSG00000117054.15" ; ccdsid "CCDS72807.1" ; exon_id "ENSE00003899874.1" ; exon_number 1 ; gene_id "ACADM--JAK1^ACADM^ENSG00000117054.15" ; gene_name ACADM ; gene_type protein_coding ; havana_gene "OTTHUMG00000009784.3" ; havana_transcript "OTTHUMT00000026968.2" ; hgnc_id "HGNC:89" ; level 1 ; orig_coord_info "chr1,75724788,75724817,+" ; protein_id "ENSP00000359871.5" ; tag basic exp_conf CCDS ; transcript_id "ACADM--JAK1^ENST00000370834.9" ; transcript_name "ACADM-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACADM--JAK1 HAVANA mRNA 1279 22082 . + . FI_gene_label "ACADM^ENSG00000117054.15" ; ID "ACADM--JAK1^ENST00000370834.9" ; Parent "ACADM--JAK1^ACADM^ENSG00000117054.15" ; ccdsid "CCDS72807.1" ; exon_id "ENSE00003899874.1" ; exon_number 1 ; gene_id "ACADM--JAK1^ACADM^ENSG00000117054.15" ; gene_name ACADM ; gene_type protein_coding ; havana_gene "OTTHUMG00000009784.3" ; havana_transcript "OTTHUMT00000026968.2" ; hgnc_id "HGNC:89" ; level 1 ; orig_coord_info "chr1,75724788,75724817,+" ; protein_id "ENSP00000359871.5" ; tag basic exp_conf CCDS ; transcript_id "ACADM--JAK1^ENST00000370834.9" ; transcript_name "ACADM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CAMK1D--AL096706.1 HAVANA gene 1187 12275 . + . FI_gene_label "CAMK1D^ENSG00000183049.13" ; ID "CAMK1D--AL096706.1^CAMK1D^ENSG00000183049.13" ; ccdsid "CCDS7092.1" ; exon_id "ENSE00001478980.1" ; exon_number 1 ; gene_id "CAMK1D--AL096706.1^CAMK1D^ENSG00000183049.13" ; gene_name CAMK1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000017683.3" ; havana_transcript "OTTHUMT00000046821.1" ; hgnc_id "HGNC:19341" ; level 2 ; orig_coord_info "chr10,12349819,12349910,+" ; protein_id "ENSP00000368122.1" ; tag basic CCDS ; transcript_id "CAMK1D--AL096706.1^ENST00000378845.5" ; transcript_name "CAMK1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
CAMK1D--AL096706.1 HAVANA mRNA 1187 12275 . + . FI_gene_label "CAMK1D^ENSG00000183049.13" ; ID "CAMK1D--AL096706.1^ENST00000378845.5" ; Parent "CAMK1D--AL096706.1^CAMK1D^ENSG00000183049.13" ; ccdsid "CCDS7092.1" ; exon_id "ENSE00001478980.1" ; exon_number 1 ; gene_id "CAMK1D--AL096706.1^CAMK1D^ENSG00000183049.13" ; gene_name CAMK1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000017683.3" ; havana_transcript "OTTHUMT00000046821.1" ; hgnc_id "HGNC:19341" ; level 2 ; orig_coord_info "chr10,12349819,12349910,+" ; protein_id "ENSP00000368122.1" ; tag basic CCDS ; transcript_id "CAMK1D--AL096706.1^ENST00000378845.5" ; transcript_name "CAMK1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CAMK1D--RPA2P2 HAVANA gene 1187 12275 . + . FI_gene_label "CAMK1D^ENSG00000183049.13" ; ID "CAMK1D--RPA2P2^CAMK1D^ENSG00000183049.13" ; ccdsid "CCDS7092.1" ; exon_id "ENSE00001478980.1" ; exon_number 1 ; gene_id "CAMK1D--RPA2P2^CAMK1D^ENSG00000183049.13" ; gene_name CAMK1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000017683.3" ; havana_transcript "OTTHUMT00000046821.1" ; hgnc_id "HGNC:19341" ; level 2 ; orig_coord_info "chr10,12349819,12349910,+" ; protein_id "ENSP00000368122.1" ; tag basic CCDS ; transcript_id "CAMK1D--RPA2P2^ENST00000378845.5" ; transcript_name "CAMK1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
CAMK1D--RPA2P2 HAVANA mRNA 1187 12275 . + . FI_gene_label "CAMK1D^ENSG00000183049.13" ; ID "CAMK1D--RPA2P2^ENST00000378845.5" ; Parent "CAMK1D--RPA2P2^CAMK1D^ENSG00000183049.13" ; ccdsid "CCDS7092.1" ; exon_id "ENSE00001478980.1" ; exon_number 1 ; gene_id "CAMK1D--RPA2P2^CAMK1D^ENSG00000183049.13" ; gene_name CAMK1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000017683.3" ; havana_transcript "OTTHUMT00000046821.1" ; hgnc_id "HGNC:19341" ; level 2 ; orig_coord_info "chr10,12349819,12349910,+" ; protein_id "ENSP00000368122.1" ; tag basic CCDS ; transcript_id "CAMK1D--RPA2P2^ENST00000378845.5" ; transcript_name "CAMK1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COBLL1--OLA1 HAVANA gene 44419 60517 . + . FI_gene_label "OLA1^ENSG00000138430.16" ; ID "COBLL1--OLA1^OLA1^ENSG00000138430.16" ; ccdsid "CCDS2255.1" ; exon_id "ENSE00003755994.1" ; exon_number 2 ; gene_id "COBLL1--OLA1^OLA1^ENSG00000138430.16" ; gene_name OLA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132335.5" ; havana_transcript "OTTHUMT00000255454.3" ; hgnc_id "HGNC:28833" ; level 2 ; orig_coord_info "chr2,174246715,174246815,-" ; protein_id "ENSP00000284719.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COBLL1--OLA1^ENST00000284719.8" ; transcript_name "OLA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
COBLL1--OLA1 HAVANA mRNA 44419 60517 . + . FI_gene_label "OLA1^ENSG00000138430.16" ; ID "COBLL1--OLA1^ENST00000284719.8" ; Parent "COBLL1--OLA1^OLA1^ENSG00000138430.16" ; ccdsid "CCDS2255.1" ; exon_id "ENSE00003755994.1" ; exon_number 2 ; gene_id "COBLL1--OLA1^OLA1^ENSG00000138430.16" ; gene_name OLA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132335.5" ; havana_transcript "OTTHUMT00000255454.3" ; hgnc_id "HGNC:28833" ; level 2 ; orig_coord_info "chr2,174246715,174246815,-" ; protein_id "ENSP00000284719.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COBLL1--OLA1^ENST00000284719.8" ; transcript_name "OLA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COBLL1--OLA1 HAVANA gene 3021 34428 . + . FI_gene_label "COBLL1^ENSG00000082438.18" ; ID "COBLL1--OLA1^COBLL1^ENSG00000082438.18" ; ccdsid "CCDS2223.2" ; exon_id "ENSE00001903629.1" ; exon_number 1 ; gene_id "COBLL1--OLA1^COBLL1^ENSG00000082438.18" ; gene_name COBLL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000074019.11" ; havana_transcript "OTTHUMT00000157055.2" ; hgnc_id "HGNC:23571" ; level 2 ; orig_coord_info "chr2,164841156,164841196,-" ; protein_id "ENSP00000341360.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "COBLL1--OLA1^ENST00000342193.8" ; transcript_name "COBLL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
COBLL1--OLA1 HAVANA mRNA 3021 34428 . + . FI_gene_label "COBLL1^ENSG00000082438.18" ; ID "COBLL1--OLA1^ENST00000342193.8" ; Parent "COBLL1--OLA1^COBLL1^ENSG00000082438.18" ; ccdsid "CCDS2223.2" ; exon_id "ENSE00001903629.1" ; exon_number 1 ; gene_id "COBLL1--OLA1^COBLL1^ENSG00000082438.18" ; gene_name COBLL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000074019.11" ; havana_transcript "OTTHUMT00000157055.2" ; hgnc_id "HGNC:23571" ; level 2 ; orig_coord_info "chr2,164841156,164841196,-" ; protein_id "ENSP00000341360.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "COBLL1--OLA1^ENST00000342193.8" ; transcript_name "COBLL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DLGAP4--LINC01522 ENSEMBL gene 1046 25132 . + . FI_gene_label "DLGAP4^ENSG00000080845.18" ; ID "DLGAP4--LINC01522^DLGAP4^ENSG00000080845.18" ; exon_id "ENSE00001146805.3" ; exon_number 3 ; gene_id "DLGAP4--LINC01522^DLGAP4^ENSG00000080845.18" ; gene_name DLGAP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032390.6" ; hgnc_id "HGNC:24476" ; level 3 ; orig_coord_info "chr20,36431718,36432716,+" ; protein_id "ENSP00000341633.5" ; tag basic appris_principal_3 ; transcript_id "DLGAP4--LINC01522^ENST00000339266.9" ; transcript_name "DLGAP4-201" ; transcript_support_level 5 ; transcript_type protein_coding
DLGAP4--LINC01522 ENSEMBL mRNA 1046 25132 . + . FI_gene_label "DLGAP4^ENSG00000080845.18" ; ID "DLGAP4--LINC01522^ENST00000339266.9" ; Parent "DLGAP4--LINC01522^DLGAP4^ENSG00000080845.18" ; exon_id "ENSE00001146805.3" ; exon_number 3 ; gene_id "DLGAP4--LINC01522^DLGAP4^ENSG00000080845.18" ; gene_name DLGAP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032390.6" ; hgnc_id "HGNC:24476" ; level 3 ; orig_coord_info "chr20,36431718,36432716,+" ; protein_id "ENSP00000341633.5" ; tag basic appris_principal_3 ; transcript_id "DLGAP4--LINC01522^ENST00000339266.9" ; transcript_name "DLGAP4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GAREM1--PARD3B HAVANA gene 1001 14525 . + . FI_gene_label "GAREM1^ENSG00000141441.16" ; ID "GAREM1--PARD3B^GAREM1^ENSG00000141441.16" ; ccdsid "CCDS56057.1" ; exon_id "ENSE00001934691.2" ; exon_number 1 ; gene_id "GAREM1--PARD3B^GAREM1^ENSG00000141441.16" ; gene_name GAREM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132273.5" ; havana_transcript "OTTHUMT00000255365.2" ; hgnc_id "HGNC:26136" ; level 2 ; orig_coord_info "chr18,32470308,32470428,-" ; protein_id "ENSP00000269209.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "GAREM1--PARD3B^ENST00000269209.7" ; transcript_name "GAREM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GAREM1--PARD3B HAVANA mRNA 1001 14525 . + . FI_gene_label "GAREM1^ENSG00000141441.16" ; ID "GAREM1--PARD3B^ENST00000269209.7" ; Parent "GAREM1--PARD3B^GAREM1^ENSG00000141441.16" ; ccdsid "CCDS56057.1" ; exon_id "ENSE00001934691.2" ; exon_number 1 ; gene_id "GAREM1--PARD3B^GAREM1^ENSG00000141441.16" ; gene_name GAREM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132273.5" ; havana_transcript "OTTHUMT00000255365.2" ; hgnc_id "HGNC:26136" ; level 2 ; orig_coord_info "chr18,32470308,32470428,-" ; protein_id "ENSP00000269209.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "GAREM1--PARD3B^ENST00000269209.7" ; transcript_name "GAREM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GAREM1--PARD3B HAVANA gene 20492 52728 . + . FI_gene_label "PARD3B^ENSG00000116117.18" ; ID "GAREM1--PARD3B^PARD3B^ENSG00000116117.18" ; ccdsid "CCDS42804.1" ; exon_id "ENSE00001172277.2" ; exon_number 1 ; gene_id "GAREM1--PARD3B^PARD3B^ENSG00000116117.18" ; gene_name PARD3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000154562.5" ; havana_transcript "OTTHUMT00000335995.1" ; hgnc_id "HGNC:14446" ; level 2 ; orig_coord_info "chr2,204546000,204546119,+" ; protein_id "ENSP00000340280.3" ; tag basic CCDS ; transcript_id "GAREM1--PARD3B^ENST00000349953.7" ; transcript_name "PARD3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
GAREM1--PARD3B HAVANA mRNA 20492 52728 . + . FI_gene_label "PARD3B^ENSG00000116117.18" ; ID "GAREM1--PARD3B^ENST00000349953.7" ; Parent "GAREM1--PARD3B^PARD3B^ENSG00000116117.18" ; ccdsid "CCDS42804.1" ; exon_id "ENSE00001172277.2" ; exon_number 1 ; gene_id "GAREM1--PARD3B^PARD3B^ENSG00000116117.18" ; gene_name PARD3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000154562.5" ; havana_transcript "OTTHUMT00000335995.1" ; hgnc_id "HGNC:14446" ; level 2 ; orig_coord_info "chr2,204546000,204546119,+" ; protein_id "ENSP00000340280.3" ; tag basic CCDS ; transcript_id "GAREM1--PARD3B^ENST00000349953.7" ; transcript_name "PARD3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--IGKV1OR-2 HAVANA gene 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--IGKV1OR-2^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--IGKV1OR-2^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--IGKV1OR-2^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--IGKV1OR-2 HAVANA mRNA 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--IGKV1OR-2^ENST00000294304.12" ; Parent "LRP5--IGKV1OR-2^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--IGKV1OR-2^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--IGKV1OR-2^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NSRP1--MED24 HAVANA gene 2274 19082 . + . FI_gene_label "NSRP1^ENSG00000126653.18" ; ID "NSRP1--MED24^NSRP1^ENSG00000126653.18" ; ccdsid "CCDS11255.1" ; exon_id "ENSE00003843705.1" ; exon_number 1 ; gene_id "NSRP1--MED24^NSRP1^ENSG00000126653.18" ; gene_name NSRP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132754.8" ; havana_transcript "OTTHUMT00000256121.3" ; hgnc_id "HGNC:25305" ; level 2 ; orig_coord_info "chr17,30116844,30116863,+" ; protein_id "ENSP00000247026.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NSRP1--MED24^ENST00000247026.10" ; transcript_name "NSRP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NSRP1--MED24 HAVANA mRNA 2274 19082 . + . FI_gene_label "NSRP1^ENSG00000126653.18" ; ID "NSRP1--MED24^ENST00000247026.10" ; Parent "NSRP1--MED24^NSRP1^ENSG00000126653.18" ; ccdsid "CCDS11255.1" ; exon_id "ENSE00003843705.1" ; exon_number 1 ; gene_id "NSRP1--MED24^NSRP1^ENSG00000126653.18" ; gene_name NSRP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132754.8" ; havana_transcript "OTTHUMT00000256121.3" ; hgnc_id "HGNC:25305" ; level 2 ; orig_coord_info "chr17,30116844,30116863,+" ; protein_id "ENSP00000247026.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NSRP1--MED24^ENST00000247026.10" ; transcript_name "NSRP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NSRP1--MED24 HAVANA gene 24642 41861 . + . FI_gene_label "MED24^ENSG00000008838.20" ; ID "NSRP1--MED24^MED24^ENSG00000008838.20" ; ccdsid "CCDS42315.1" ; exon_id "ENSE00003649912.1" ; exon_number 2 ; gene_id "NSRP1--MED24^MED24^ENSG00000008838.20" ; gene_name MED24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133329.7" ; havana_transcript "OTTHUMT00000446858.1" ; hgnc_id "HGNC:22963" ; level 2 ; orig_coord_info "chr17,40053469,40053598,-" ; protein_id "ENSP00000348610.3" ; tag alternative_5_UTR basic CCDS ; transcript_id "NSRP1--MED24^ENST00000356271.7" ; transcript_name "MED24-201" ; transcript_support_level 2 ; transcript_type protein_coding
NSRP1--MED24 HAVANA mRNA 24642 41861 . + . FI_gene_label "MED24^ENSG00000008838.20" ; ID "NSRP1--MED24^ENST00000356271.7" ; Parent "NSRP1--MED24^MED24^ENSG00000008838.20" ; ccdsid "CCDS42315.1" ; exon_id "ENSE00003649912.1" ; exon_number 2 ; gene_id "NSRP1--MED24^MED24^ENSG00000008838.20" ; gene_name MED24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133329.7" ; havana_transcript "OTTHUMT00000446858.1" ; hgnc_id "HGNC:22963" ; level 2 ; orig_coord_info "chr17,40053469,40053598,-" ; protein_id "ENSP00000348610.3" ; tag alternative_5_UTR basic CCDS ; transcript_id "NSRP1--MED24^ENST00000356271.7" ; transcript_name "MED24-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PARD3B--DIRC1 HAVANA gene 1526 33762 . + . FI_gene_label "PARD3B^ENSG00000116117.18" ; ID "PARD3B--DIRC1^PARD3B^ENSG00000116117.18" ; ccdsid "CCDS42804.1" ; exon_id "ENSE00001172277.2" ; exon_number 1 ; gene_id "PARD3B--DIRC1^PARD3B^ENSG00000116117.18" ; gene_name PARD3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000154562.5" ; havana_transcript "OTTHUMT00000335995.1" ; hgnc_id "HGNC:14446" ; level 2 ; orig_coord_info "chr2,204546000,204546119,+" ; protein_id "ENSP00000340280.3" ; tag basic CCDS ; transcript_id "PARD3B--DIRC1^ENST00000349953.7" ; transcript_name "PARD3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
PARD3B--DIRC1 HAVANA mRNA 1526 33762 . + . FI_gene_label "PARD3B^ENSG00000116117.18" ; ID "PARD3B--DIRC1^ENST00000349953.7" ; Parent "PARD3B--DIRC1^PARD3B^ENSG00000116117.18" ; ccdsid "CCDS42804.1" ; exon_id "ENSE00001172277.2" ; exon_number 1 ; gene_id "PARD3B--DIRC1^PARD3B^ENSG00000116117.18" ; gene_name PARD3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000154562.5" ; havana_transcript "OTTHUMT00000335995.1" ; hgnc_id "HGNC:14446" ; level 2 ; orig_coord_info "chr2,204546000,204546119,+" ; protein_id "ENSP00000340280.3" ; tag basic CCDS ; transcript_id "PARD3B--DIRC1^ENST00000349953.7" ; transcript_name "PARD3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PPFIA1--APTX HAVANA gene 1001 43074 . + . FI_gene_label "PPFIA1^ENSG00000131626.19" ; ID "PPFIA1--APTX^PPFIA1^ENSG00000131626.19" ; ccdsid "CCDS31627.1" ; exon_id "ENSE00002711464.1" ; exon_number 2 ; gene_id "PPFIA1--APTX^PPFIA1^ENSG00000131626.19" ; gene_name PPFIA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167266.7" ; havana_transcript "OTTHUMT00000393905.1" ; hgnc_id "HGNC:9245" ; level 2 ; orig_coord_info "chr11,70272173,70272436,+" ; protein_id "ENSP00000253925.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPFIA1--APTX^ENST00000253925.12" ; transcript_name "PPFIA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPFIA1--APTX HAVANA mRNA 1001 43074 . + . FI_gene_label "PPFIA1^ENSG00000131626.19" ; ID "PPFIA1--APTX^ENST00000253925.12" ; Parent "PPFIA1--APTX^PPFIA1^ENSG00000131626.19" ; ccdsid "CCDS31627.1" ; exon_id "ENSE00002711464.1" ; exon_number 2 ; gene_id "PPFIA1--APTX^PPFIA1^ENSG00000131626.19" ; gene_name PPFIA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167266.7" ; havana_transcript "OTTHUMT00000393905.1" ; hgnc_id "HGNC:9245" ; level 2 ; orig_coord_info "chr11,70272173,70272436,+" ; protein_id "ENSP00000253925.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPFIA1--APTX^ENST00000253925.12" ; transcript_name "PPFIA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPFIA1--APTX HAVANA gene 52108 66661 . + . FI_gene_label "APTX^ENSG00000137074.20" ; ID "PPFIA1--APTX^APTX^ENSG00000137074.20" ; ccdsid "CCDS75827.1" ; exon_id "ENSE00003651564.1" ; exon_number 2 ; gene_id "PPFIA1--APTX^APTX^ENSG00000137074.20" ; gene_name APTX ; gene_type protein_coding ; havana_gene "OTTHUMG00000019759.28" ; havana_transcript "OTTHUMT00000355332.3" ; hgnc_id "HGNC:15984" ; level 2 ; orig_coord_info "chr9,32989759,32989891,-" ; protein_id "ENSP00000311547.4" ; tag RNA_Seq_supported_only basic CCDS ; transcript_id "PPFIA1--APTX^ENST00000309615.8" ; transcript_name "APTX-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPFIA1--APTX HAVANA mRNA 52108 66661 . + . FI_gene_label "APTX^ENSG00000137074.20" ; ID "PPFIA1--APTX^ENST00000309615.8" ; Parent "PPFIA1--APTX^APTX^ENSG00000137074.20" ; ccdsid "CCDS75827.1" ; exon_id "ENSE00003651564.1" ; exon_number 2 ; gene_id "PPFIA1--APTX^APTX^ENSG00000137074.20" ; gene_name APTX ; gene_type protein_coding ; havana_gene "OTTHUMG00000019759.28" ; havana_transcript "OTTHUMT00000355332.3" ; hgnc_id "HGNC:15984" ; level 2 ; orig_coord_info "chr9,32989759,32989891,-" ; protein_id "ENSP00000311547.4" ; tag RNA_Seq_supported_only basic CCDS ; transcript_id "PPFIA1--APTX^ENST00000309615.8" ; transcript_name "APTX-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPFIA1--SHANK2 HAVANA gene 1001 43074 . + . FI_gene_label "PPFIA1^ENSG00000131626.19" ; ID "PPFIA1--SHANK2^PPFIA1^ENSG00000131626.19" ; ccdsid "CCDS31627.1" ; exon_id "ENSE00002711464.1" ; exon_number 2 ; gene_id "PPFIA1--SHANK2^PPFIA1^ENSG00000131626.19" ; gene_name PPFIA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167266.7" ; havana_transcript "OTTHUMT00000393905.1" ; hgnc_id "HGNC:9245" ; level 2 ; orig_coord_info "chr11,70272173,70272436,+" ; protein_id "ENSP00000253925.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPFIA1--SHANK2^ENST00000253925.12" ; transcript_name "PPFIA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPFIA1--SHANK2 HAVANA mRNA 1001 43074 . + . FI_gene_label "PPFIA1^ENSG00000131626.19" ; ID "PPFIA1--SHANK2^ENST00000253925.12" ; Parent "PPFIA1--SHANK2^PPFIA1^ENSG00000131626.19" ; ccdsid "CCDS31627.1" ; exon_id "ENSE00002711464.1" ; exon_number 2 ; gene_id "PPFIA1--SHANK2^PPFIA1^ENSG00000131626.19" ; gene_name PPFIA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167266.7" ; havana_transcript "OTTHUMT00000393905.1" ; hgnc_id "HGNC:9245" ; level 2 ; orig_coord_info "chr11,70272173,70272436,+" ; protein_id "ENSP00000253925.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPFIA1--SHANK2^ENST00000253925.12" ; transcript_name "PPFIA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPFIA1--SHANK2 HAVANA gene 79928 103353 . + . FI_gene_label "SHANK2^ENSG00000162105.20" ; ID "PPFIA1--SHANK2^SHANK2^ENSG00000162105.20" ; ccdsid "CCDS76448.1" ; exon_id "ENSE00001714763.2" ; exon_number 1 ; gene_id "PPFIA1--SHANK2^SHANK2^ENSG00000162105.20" ; gene_name SHANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154615.9" ; havana_transcript "OTTHUMT00000477858.2" ; hgnc_id "HGNC:14295" ; level 2 ; orig_coord_info "chr11,70661596,70661767,-" ; protein_id "ENSP00000345193.6" ; tag basic CCDS ; transcript_id "PPFIA1--SHANK2^ENST00000338508.8" ; transcript_name "SHANK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
PPFIA1--SHANK2 HAVANA mRNA 79928 103353 . + . FI_gene_label "SHANK2^ENSG00000162105.20" ; ID "PPFIA1--SHANK2^ENST00000338508.8" ; Parent "PPFIA1--SHANK2^SHANK2^ENSG00000162105.20" ; ccdsid "CCDS76448.1" ; exon_id "ENSE00001714763.2" ; exon_number 1 ; gene_id "PPFIA1--SHANK2^SHANK2^ENSG00000162105.20" ; gene_name SHANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154615.9" ; havana_transcript "OTTHUMT00000477858.2" ; hgnc_id "HGNC:14295" ; level 2 ; orig_coord_info "chr11,70661596,70661767,-" ; protein_id "ENSP00000345193.6" ; tag basic CCDS ; transcript_id "PPFIA1--SHANK2^ENST00000338508.8" ; transcript_name "SHANK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RDM1--AC090503.2 HAVANA gene 1047 7441 . + . FI_gene_label "RDM1^ENSG00000278023.7" ; ID "RDM1--AC090503.2^RDM1^ENSG00000278023.7" ; ccdsid "CCDS54110.1" ; exon_id "ENSE00003754442.1" ; exon_number 1 ; gene_id "RDM1--AC090503.2^RDM1^ENSG00000278023.7" ; gene_name RDM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188399.3" ; havana_transcript "OTTHUMT00000477103.1" ; hgnc_id "HGNC:19950" ; level 2 ; orig_coord_info "chr17,35930632,35930727,-" ; protein_id "ENSP00000483387.1" ; tag basic CCDS ; transcript_id "RDM1--AC090503.2^ENST00000612980.4" ; transcript_name "RDM1-215" ; transcript_support_level 1 ; transcript_type protein_coding
RDM1--AC090503.2 HAVANA mRNA 1047 7441 . + . FI_gene_label "RDM1^ENSG00000278023.7" ; ID "RDM1--AC090503.2^ENST00000612980.4" ; Parent "RDM1--AC090503.2^RDM1^ENSG00000278023.7" ; ccdsid "CCDS54110.1" ; exon_id "ENSE00003754442.1" ; exon_number 1 ; gene_id "RDM1--AC090503.2^RDM1^ENSG00000278023.7" ; gene_name RDM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188399.3" ; havana_transcript "OTTHUMT00000477103.1" ; hgnc_id "HGNC:19950" ; level 2 ; orig_coord_info "chr17,35930632,35930727,-" ; protein_id "ENSP00000483387.1" ; tag basic CCDS ; transcript_id "RDM1--AC090503.2^ENST00000612980.4" ; transcript_name "RDM1-215" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RDM1--AC133480.1 HAVANA gene 1047 7441 . + . FI_gene_label "RDM1^ENSG00000278023.7" ; ID "RDM1--AC133480.1^RDM1^ENSG00000278023.7" ; ccdsid "CCDS54110.1" ; exon_id "ENSE00003754442.1" ; exon_number 1 ; gene_id "RDM1--AC133480.1^RDM1^ENSG00000278023.7" ; gene_name RDM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188399.3" ; havana_transcript "OTTHUMT00000477103.1" ; hgnc_id "HGNC:19950" ; level 2 ; orig_coord_info "chr17,35930632,35930727,-" ; protein_id "ENSP00000483387.1" ; tag basic CCDS ; transcript_id "RDM1--AC133480.1^ENST00000612980.4" ; transcript_name "RDM1-215" ; transcript_support_level 1 ; transcript_type protein_coding
RDM1--AC133480.1 HAVANA mRNA 1047 7441 . + . FI_gene_label "RDM1^ENSG00000278023.7" ; ID "RDM1--AC133480.1^ENST00000612980.4" ; Parent "RDM1--AC133480.1^RDM1^ENSG00000278023.7" ; ccdsid "CCDS54110.1" ; exon_id "ENSE00003754442.1" ; exon_number 1 ; gene_id "RDM1--AC133480.1^RDM1^ENSG00000278023.7" ; gene_name RDM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188399.3" ; havana_transcript "OTTHUMT00000477103.1" ; hgnc_id "HGNC:19950" ; level 2 ; orig_coord_info "chr17,35930632,35930727,-" ; protein_id "ENSP00000483387.1" ; tag basic CCDS ; transcript_id "RDM1--AC133480.1^ENST00000612980.4" ; transcript_name "RDM1-215" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RDM1P5--TAF15 HAVANA gene 17112 31194 . + . FI_gene_label "TAF15^ENSG00000270647.6" ; ID "RDM1P5--TAF15^TAF15^ENSG00000270647.6" ; exon_id "ENSE00003682812.1" ; exon_number 5 ; gene_id "RDM1P5--TAF15^TAF15^ENSG00000270647.6" ; gene_name TAF15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188384.3" ; havana_transcript "OTTHUMT00000477049.1" ; hgnc_id "HGNC:11547" ; level 2 ; orig_coord_info "chr17,35820421,35820437,+" ; protein_id "ENSP00000474653.1" ; transcript_id "RDM1P5--TAF15^ENST00000603393.5" ; transcript_name "TAF15-203" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
RDM1P5--TAF15 HAVANA mRNA 17112 31194 . + . FI_gene_label "TAF15^ENSG00000270647.6" ; ID "RDM1P5--TAF15^ENST00000603393.5" ; Parent "RDM1P5--TAF15^TAF15^ENSG00000270647.6" ; exon_id "ENSE00003682812.1" ; exon_number 5 ; gene_id "RDM1P5--TAF15^TAF15^ENSG00000270647.6" ; gene_name TAF15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188384.3" ; havana_transcript "OTTHUMT00000477049.1" ; hgnc_id "HGNC:11547" ; level 2 ; orig_coord_info "chr17,35820421,35820437,+" ; protein_id "ENSP00000474653.1" ; transcript_id "RDM1P5--TAF15^ENST00000603393.5" ; transcript_name "TAF15-203" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
RPN2--BCAS1 HAVANA gene 1921 21709 . + . FI_gene_label "RPN2^ENSG00000118705.17" ; ID "RPN2--BCAS1^RPN2^ENSG00000118705.17" ; ccdsid "CCDS13291.1" ; exon_id "ENSE00001369190.4" ; exon_number 1 ; gene_id "RPN2--BCAS1^RPN2^ENSG00000118705.17" ; gene_name RPN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032409.6" ; havana_transcript "OTTHUMT00000079076.4" ; hgnc_id "HGNC:10382" ; level 2 ; orig_coord_info "chr20,37179357,37179369,+" ; protein_id "ENSP00000237530.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPN2--BCAS1^ENST00000237530.11" ; transcript_name "RPN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPN2--BCAS1 HAVANA mRNA 1921 21709 . + . FI_gene_label "RPN2^ENSG00000118705.17" ; ID "RPN2--BCAS1^ENST00000237530.11" ; Parent "RPN2--BCAS1^RPN2^ENSG00000118705.17" ; ccdsid "CCDS13291.1" ; exon_id "ENSE00001369190.4" ; exon_number 1 ; gene_id "RPN2--BCAS1^RPN2^ENSG00000118705.17" ; gene_name RPN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032409.6" ; havana_transcript "OTTHUMT00000079076.4" ; hgnc_id "HGNC:10382" ; level 2 ; orig_coord_info "chr20,37179357,37179369,+" ; protein_id "ENSP00000237530.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPN2--BCAS1^ENST00000237530.11" ; transcript_name "RPN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPN2--BCAS1 HAVANA gene 24759 39474 . + . FI_gene_label "BCAS1^ENSG00000064787.13" ; ID "RPN2--BCAS1^BCAS1^ENSG00000064787.13" ; ccdsid "CCDS82631.1" ; exon_id "ENSE00003714232.1" ; exon_number 2 ; gene_id "RPN2--BCAS1^BCAS1^ENSG00000064787.13" ; gene_name BCAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032772.2" ; havana_transcript "OTTHUMT00000259203.1" ; hgnc_id "HGNC:974" ; level 2 ; orig_coord_info "chr20,54058647,54058718,-" ; protein_id "ENSP00000360490.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "RPN2--BCAS1^ENST00000371435.6" ; transcript_name "BCAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPN2--BCAS1 HAVANA mRNA 24759 39474 . + . FI_gene_label "BCAS1^ENSG00000064787.13" ; ID "RPN2--BCAS1^ENST00000371435.6" ; Parent "RPN2--BCAS1^BCAS1^ENSG00000064787.13" ; ccdsid "CCDS82631.1" ; exon_id "ENSE00003714232.1" ; exon_number 2 ; gene_id "RPN2--BCAS1^BCAS1^ENSG00000064787.13" ; gene_name BCAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032772.2" ; havana_transcript "OTTHUMT00000259203.1" ; hgnc_id "HGNC:974" ; level 2 ; orig_coord_info "chr20,54058647,54058718,-" ; protein_id "ENSP00000360490.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "RPN2--BCAS1^ENST00000371435.6" ; transcript_name "BCAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SSH2--MIEN1 HAVANA gene 1125 32617 . + . FI_gene_label "SSH2^ENSG00000141298.19" ; ID "SSH2--MIEN1^SSH2^ENSG00000141298.19" ; ccdsid "CCDS11253.1" ; exon_id "ENSE00001878927.1" ; exon_number 1 ; gene_id "SSH2--MIEN1^SSH2^ENSG00000141298.19" ; gene_name SSH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132752.8" ; havana_transcript "OTTHUMT00000256116.1" ; hgnc_id "HGNC:30580" ; level 2 ; orig_coord_info "chr17,29929938,29930000,-" ; protein_id "ENSP00000269033.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SSH2--MIEN1^ENST00000269033.7" ; transcript_name "SSH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SSH2--MIEN1 HAVANA mRNA 1125 32617 . + . FI_gene_label "SSH2^ENSG00000141298.19" ; ID "SSH2--MIEN1^ENST00000269033.7" ; Parent "SSH2--MIEN1^SSH2^ENSG00000141298.19" ; ccdsid "CCDS11253.1" ; exon_id "ENSE00001878927.1" ; exon_number 1 ; gene_id "SSH2--MIEN1^SSH2^ENSG00000141298.19" ; gene_name SSH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132752.8" ; havana_transcript "OTTHUMT00000256116.1" ; hgnc_id "HGNC:30580" ; level 2 ; orig_coord_info "chr17,29929938,29930000,-" ; protein_id "ENSP00000269033.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SSH2--MIEN1^ENST00000269033.7" ; transcript_name "SSH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SSH2--MIEN1 HAVANA gene 35618 37640 . + . FI_gene_label "MIEN1^ENSG00000141741.12" ; ID "SSH2--MIEN1^MIEN1^ENSG00000141741.12" ; ccdsid "CCDS11344.1" ; exon_id "ENSE00001848841.2" ; exon_number 1 ; gene_id "SSH2--MIEN1^MIEN1^ENSG00000141741.12" ; gene_name MIEN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133252.4" ; havana_transcript "OTTHUMT00000257020.4" ; hgnc_id "HGNC:28230" ; level 2 ; orig_coord_info "chr17,39730407,39730495,-" ; protein_id "ENSP00000377778.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SSH2--MIEN1^ENST00000394231.8" ; transcript_name "MIEN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SSH2--MIEN1 HAVANA mRNA 35618 37640 . + . FI_gene_label "MIEN1^ENSG00000141741.12" ; ID "SSH2--MIEN1^ENST00000394231.8" ; Parent "SSH2--MIEN1^MIEN1^ENSG00000141741.12" ; ccdsid "CCDS11344.1" ; exon_id "ENSE00001848841.2" ; exon_number 1 ; gene_id "SSH2--MIEN1^MIEN1^ENSG00000141741.12" ; gene_name MIEN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133252.4" ; havana_transcript "OTTHUMT00000257020.4" ; hgnc_id "HGNC:28230" ; level 2 ; orig_coord_info "chr17,39730407,39730495,-" ; protein_id "ENSP00000377778.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SSH2--MIEN1^ENST00000394231.8" ; transcript_name "MIEN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
THRA--TRHDE HAVANA gene 21568 55060 . + . FI_gene_label "TRHDE^ENSG00000072657.9" ; ID "THRA--TRHDE^TRHDE^ENSG00000072657.9" ; ccdsid "CCDS9004.1" ; exon_id "ENSE00000937466.8" ; exon_number 1 ; gene_id "THRA--TRHDE^TRHDE^ENSG00000072657.9" ; gene_name TRHDE ; gene_type protein_coding ; havana_gene "OTTHUMG00000169642.5" ; havana_transcript "OTTHUMT00000405380.3" ; hgnc_id "HGNC:30748" ; level 2 ; orig_coord_info "chr12,72272779,72273557,+" ; protein_id "ENSP00000261180.4" ; tag basic appris_principal_1 CCDS ; transcript_id "THRA--TRHDE^ENST00000261180.9" ; transcript_name "TRHDE-201" ; transcript_support_level 1 ; transcript_type protein_coding
THRA--TRHDE HAVANA mRNA 21568 55060 . + . FI_gene_label "TRHDE^ENSG00000072657.9" ; ID "THRA--TRHDE^ENST00000261180.9" ; Parent "THRA--TRHDE^TRHDE^ENSG00000072657.9" ; ccdsid "CCDS9004.1" ; exon_id "ENSE00000937466.8" ; exon_number 1 ; gene_id "THRA--TRHDE^TRHDE^ENSG00000072657.9" ; gene_name TRHDE ; gene_type protein_coding ; havana_gene "OTTHUMG00000169642.5" ; havana_transcript "OTTHUMT00000405380.3" ; hgnc_id "HGNC:30748" ; level 2 ; orig_coord_info "chr12,72272779,72273557,+" ; protein_id "ENSP00000261180.4" ; tag basic appris_principal_1 CCDS ; transcript_id "THRA--TRHDE^ENST00000261180.9" ; transcript_name "TRHDE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
THRA--TRHDE HAVANA gene 3096 18567 . + . FI_gene_label "THRA^ENSG00000126351.13" ; ID "THRA--TRHDE^THRA^ENSG00000126351.13" ; ccdsid "CCDS11360.1" ; exon_id "ENSE00001254896.3" ; exon_number 2 ; gene_id "THRA--TRHDE^THRA^ENSG00000126351.13" ; gene_name THRA ; gene_type protein_coding ; havana_gene "OTTHUMG00000133332.3" ; havana_transcript "OTTHUMT00000257160.2" ; hgnc_id "HGNC:11796" ; level 2 ; orig_coord_info "chr17,40074489,40074541,+" ; protein_id "ENSP00000264637.4" ; tag basic CCDS ; transcript_id "THRA--TRHDE^ENST00000264637.8" ; transcript_name "THRA-201" ; transcript_support_level 1 ; transcript_type protein_coding
THRA--TRHDE HAVANA mRNA 3096 18567 . + . FI_gene_label "THRA^ENSG00000126351.13" ; ID "THRA--TRHDE^ENST00000264637.8" ; Parent "THRA--TRHDE^THRA^ENSG00000126351.13" ; ccdsid "CCDS11360.1" ; exon_id "ENSE00001254896.3" ; exon_number 2 ; gene_id "THRA--TRHDE^THRA^ENSG00000126351.13" ; gene_name THRA ; gene_type protein_coding ; havana_gene "OTTHUMG00000133332.3" ; havana_transcript "OTTHUMT00000257160.2" ; hgnc_id "HGNC:11796" ; level 2 ; orig_coord_info "chr17,40074489,40074541,+" ; protein_id "ENSP00000264637.4" ; tag basic CCDS ; transcript_id "THRA--TRHDE^ENST00000264637.8" ; transcript_name "THRA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK1--METTL8 HAVANA gene 2576 33534 . + . FI_gene_label "TLK1^ENSG00000198586.14" ; ID "TLK1--METTL8^TLK1^ENSG00000198586.14" ; exon_id "ENSE00001657512.1" ; exon_number 1 ; gene_id "TLK1--METTL8^TLK1^ENSG00000198586.14" ; gene_name TLK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132243.7" ; havana_transcript "OTTHUMT00000333807.2" ; hgnc_id "HGNC:11841" ; level 2 ; orig_coord_info "chr2,171160290,171160428,-" ; protein_id "ENSP00000352810.3" ; tag not_organism_supported ; transcript_id "TLK1--METTL8^ENST00000359766.7" ; transcript_name "TLK1-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
TLK1--METTL8 HAVANA mRNA 2576 33534 . + . FI_gene_label "TLK1^ENSG00000198586.14" ; ID "TLK1--METTL8^ENST00000359766.7" ; Parent "TLK1--METTL8^TLK1^ENSG00000198586.14" ; exon_id "ENSE00001657512.1" ; exon_number 1 ; gene_id "TLK1--METTL8^TLK1^ENSG00000198586.14" ; gene_name TLK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132243.7" ; havana_transcript "OTTHUMT00000333807.2" ; hgnc_id "HGNC:11841" ; level 2 ; orig_coord_info "chr2,171160290,171160428,-" ; protein_id "ENSP00000352810.3" ; tag not_organism_supported ; transcript_id "TLK1--METTL8^ENST00000359766.7" ; transcript_name "TLK1-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
TLK1--METTL8 HAVANA gene 38582 58784 . + . FI_gene_label "METTL8^ENSG00000123600.20" ; ID "TLK1--METTL8^METTL8^ENSG00000123600.20" ; exon_id "ENSE00003495623.1" ; exon_number 2 ; gene_id "TLK1--METTL8^METTL8^ENSG00000123600.20" ; gene_name METTL8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132261.6" ; havana_transcript "OTTHUMT00000255345.4" ; hgnc_id "HGNC:25856" ; level 2 ; orig_coord_info "chr2,171392043,171392185,-" ; protein_id "ENSP00000364407.3" ; tag basic ; transcript_id "TLK1--METTL8^ENST00000375258.8" ; transcript_name "METTL8-201" ; transcript_support_level 5 ; transcript_type protein_coding
TLK1--METTL8 HAVANA mRNA 38582 58784 . + . FI_gene_label "METTL8^ENSG00000123600.20" ; ID "TLK1--METTL8^ENST00000375258.8" ; Parent "TLK1--METTL8^METTL8^ENSG00000123600.20" ; exon_id "ENSE00003495623.1" ; exon_number 2 ; gene_id "TLK1--METTL8^METTL8^ENSG00000123600.20" ; gene_name METTL8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132261.6" ; havana_transcript "OTTHUMT00000255345.4" ; hgnc_id "HGNC:25856" ; level 2 ; orig_coord_info "chr2,171392043,171392185,-" ; protein_id "ENSP00000364407.3" ; tag basic ; transcript_id "TLK1--METTL8^ENST00000375258.8" ; transcript_name "METTL8-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTLL12--TSPO HAVANA gene 1001 14996 . + . FI_gene_label "TTLL12^ENSG00000100304.13" ; ID "TTLL12--TSPO^TTLL12^ENSG00000100304.13" ; ccdsid "CCDS14047.1" ; exon_id "ENSE00001925503.2" ; exon_number 1 ; gene_id "TTLL12--TSPO^TTLL12^ENSG00000100304.13" ; gene_name TTLL12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150682.4" ; havana_transcript "OTTHUMT00000319611.2" ; hgnc_id "HGNC:28974" ; level 2 ; orig_coord_info "chr22,43186893,43187069,-" ; protein_id "ENSP00000216129.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTLL12--TSPO^ENST00000216129.7" ; transcript_name "TTLL12-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTLL12--TSPO HAVANA mRNA 1001 14996 . + . FI_gene_label "TTLL12^ENSG00000100304.13" ; ID "TTLL12--TSPO^ENST00000216129.7" ; Parent "TTLL12--TSPO^TTLL12^ENSG00000100304.13" ; ccdsid "CCDS14047.1" ; exon_id "ENSE00001925503.2" ; exon_number 1 ; gene_id "TTLL12--TSPO^TTLL12^ENSG00000100304.13" ; gene_name TTLL12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150682.4" ; havana_transcript "OTTHUMT00000319611.2" ; hgnc_id "HGNC:28974" ; level 2 ; orig_coord_info "chr22,43186893,43187069,-" ; protein_id "ENSP00000216129.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTLL12--TSPO^ENST00000216129.7" ; transcript_name "TTLL12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTLL12--TSPO HAVANA gene 18381 22680 . + . FI_gene_label "TSPO^ENSG00000100300.18" ; ID "TTLL12--TSPO^TSPO^ENSG00000100300.18" ; ccdsid "CCDS33661.1" ; exon_id "ENSE00002316005.1" ; exon_number 2 ; gene_id "TTLL12--TSPO^TSPO^ENSG00000100300.18" ; gene_name TSPO ; gene_type protein_coding ; havana_gene "OTTHUMG00000150573.9" ; havana_transcript "OTTHUMT00000319618.1" ; hgnc_id "HGNC:1158" ; level 2 ; orig_coord_info "chr22,43159239,43159420,+" ; protein_id "ENSP00000328973.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "TTLL12--TSPO^ENST00000329563.8" ; transcript_name "TSPO-201" ; transcript_support_level 3 ; transcript_type protein_coding
TTLL12--TSPO HAVANA mRNA 18381 22680 . + . FI_gene_label "TSPO^ENSG00000100300.18" ; ID "TTLL12--TSPO^ENST00000329563.8" ; Parent "TTLL12--TSPO^TSPO^ENSG00000100300.18" ; ccdsid "CCDS33661.1" ; exon_id "ENSE00002316005.1" ; exon_number 2 ; gene_id "TTLL12--TSPO^TSPO^ENSG00000100300.18" ; gene_name TSPO ; gene_type protein_coding ; havana_gene "OTTHUMG00000150573.9" ; havana_transcript "OTTHUMT00000319618.1" ; hgnc_id "HGNC:1158" ; level 2 ; orig_coord_info "chr22,43159239,43159420,+" ; protein_id "ENSP00000328973.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "TTLL12--TSPO^ENST00000329563.8" ; transcript_name "TSPO-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
CAMK1D--AL096706.1 HAVANA gene 23053 27408 . + . FI_gene_label "AL096706.1^ENSG00000287358.1" ; ID "CAMK1D--AL096706.1^AL096706.1^ENSG00000287358.1" ; exon_id "ENSE00003885756.1" ; exon_number 1 ; gene_id "CAMK1D--AL096706.1^AL096706.1^ENSG00000287358.1" ; gene_name "AL096706.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193858.1" ; havana_transcript "OTTHUMT00000505421.1" ; level 2 ; orig_coord_info "chr10,81874349,81875133,-" ; tag basic ; transcript_id "CAMK1D--AL096706.1^ENST00000666227.1" ; transcript_name "AL096706.1-201" ; transcript_type lncRNA
CAMK1D--AL096706.1 HAVANA RNA 23053 27408 . + . FI_gene_label "AL096706.1^ENSG00000287358.1" ; ID "CAMK1D--AL096706.1^ENST00000666227.1" ; Parent "CAMK1D--AL096706.1^AL096706.1^ENSG00000287358.1" ; exon_id "ENSE00003885756.1" ; exon_number 1 ; gene_id "CAMK1D--AL096706.1^AL096706.1^ENSG00000287358.1" ; gene_name "AL096706.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193858.1" ; havana_transcript "OTTHUMT00000505421.1" ; level 2 ; orig_coord_info "chr10,81874349,81875133,-" ; tag basic ; transcript_id "CAMK1D--AL096706.1^ENST00000666227.1" ; transcript_name "AL096706.1-201" ; transcript_type lncRNA
L1 and L2 created:
CAMK1D--RPA2P2 HAVANA gene 23053 23848 . + . FI_gene_label "RPA2P2^ENSG00000226466.2" ; ID "CAMK1D--RPA2P2^RPA2P2^ENSG00000226466.2" ; exon_id "ENSE00001753092.1" ; exon_number 1 ; gene_id "CAMK1D--RPA2P2^RPA2P2^ENSG00000226466.2" ; gene_name RPA2P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000018623.1" ; havana_transcript "OTTHUMT00000049100.1" ; hgnc_id "HGNC:45117" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr10,81136540,81137335,-" ; tag pseudo_consens basic ; transcript_id "CAMK1D--RPA2P2^ENST00000419698.1" ; transcript_name "RPA2P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
CAMK1D--RPA2P2 HAVANA RNA 23053 23848 . + . FI_gene_label "RPA2P2^ENSG00000226466.2" ; ID "CAMK1D--RPA2P2^ENST00000419698.1" ; Parent "CAMK1D--RPA2P2^RPA2P2^ENSG00000226466.2" ; exon_id "ENSE00001753092.1" ; exon_number 1 ; gene_id "CAMK1D--RPA2P2^RPA2P2^ENSG00000226466.2" ; gene_name RPA2P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000018623.1" ; havana_transcript "OTTHUMT00000049100.1" ; hgnc_id "HGNC:45117" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr10,81136540,81137335,-" ; tag pseudo_consens basic ; transcript_id "CAMK1D--RPA2P2^ENST00000419698.1" ; transcript_name "RPA2P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
DLGAP4--LINC01522 HAVANA gene 29351 30779 . + . FI_gene_label "LINC01522^ENSG00000237423.3" ; ID "DLGAP4--LINC01522^LINC01522^ENSG00000237423.3" ; exon_id "ENSE00001654172.1" ; exon_number 1 ; gene_id "DLGAP4--LINC01522^LINC01522^ENSG00000237423.3" ; gene_name LINC01522 ; gene_type lncRNA ; havana_gene "OTTHUMG00000032678.5" ; havana_transcript "OTTHUMT00000079613.1" ; hgnc_id "HGNC:51224" ; level 1 ; orig_coord_info "chr20,47988607,47988744,-" ; tag exp_conf ; transcript_id "DLGAP4--LINC01522^ENST00000428999.1" ; transcript_name "LINC01522-201" ; transcript_support_level 2 ; transcript_type lncRNA
DLGAP4--LINC01522 HAVANA RNA 29351 30779 . + . FI_gene_label "LINC01522^ENSG00000237423.3" ; ID "DLGAP4--LINC01522^ENST00000428999.1" ; Parent "DLGAP4--LINC01522^LINC01522^ENSG00000237423.3" ; exon_id "ENSE00001654172.1" ; exon_number 1 ; gene_id "DLGAP4--LINC01522^LINC01522^ENSG00000237423.3" ; gene_name LINC01522 ; gene_type lncRNA ; havana_gene "OTTHUMG00000032678.5" ; havana_transcript "OTTHUMT00000079613.1" ; hgnc_id "HGNC:51224" ; level 1 ; orig_coord_info "chr20,47988607,47988744,-" ; tag exp_conf ; transcript_id "DLGAP4--LINC01522^ENST00000428999.1" ; transcript_name "LINC01522-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
LRP5--IGKV1OR-2 HAVANA gene 33834 34315 . + . FI_gene_label "IGKV1OR-2^ENSG00000156755.10" ; ID "LRP5--IGKV1OR-2^IGKV1OR-2^ENSG00000156755.10" ; exon_id "ENSE00003487343.1" ; exon_number 1 ; gene_id "LRP5--IGKV1OR-2^IGKV1OR-2^ENSG00000156755.10" ; gene_name "IGKV1OR-2" ; gene_type IG_V_pseudogene ; havana_gene "OTTHUMG00000013330.3" ; havana_transcript "OTTHUMT00000037120.3" ; hgnc_id "HGNC:5761" ; level 1 ; orig_coord_info "chr9,64765484,64765535,-" ; tag pseudo_consens basic ; transcript_id "LRP5--IGKV1OR-2^ENST00000457995.3" ; transcript_name "IGKV1OR-2-201" ; transcript_support_level NA ; transcript_type IG_V_pseudogene
LRP5--IGKV1OR-2 HAVANA RNA 33834 34315 . + . FI_gene_label "IGKV1OR-2^ENSG00000156755.10" ; ID "LRP5--IGKV1OR-2^ENST00000457995.3" ; Parent "LRP5--IGKV1OR-2^IGKV1OR-2^ENSG00000156755.10" ; exon_id "ENSE00003487343.1" ; exon_number 1 ; gene_id "LRP5--IGKV1OR-2^IGKV1OR-2^ENSG00000156755.10" ; gene_name "IGKV1OR-2" ; gene_type IG_V_pseudogene ; havana_gene "OTTHUMG00000013330.3" ; havana_transcript "OTTHUMT00000037120.3" ; hgnc_id "HGNC:5761" ; level 1 ; orig_coord_info "chr9,64765484,64765535,-" ; tag pseudo_consens basic ; transcript_id "LRP5--IGKV1OR-2^ENST00000457995.3" ; transcript_name "IGKV1OR-2-201" ; transcript_support_level NA ; transcript_type IG_V_pseudogene
L1 and L2 created:
PARD3B--DIRC1 HAVANA gene 41112 43148 . + . FI_gene_label "DIRC1^ENSG00000174325.6" ; ID "PARD3B--DIRC1^DIRC1^ENSG00000174325.6" ; exon_id "ENSE00001178008.1" ; exon_number 1 ; gene_id "PARD3B--DIRC1^DIRC1^ENSG00000174325.6" ; gene_name DIRC1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000132646.2" ; havana_transcript "OTTHUMT00000255897.2" ; hgnc_id "HGNC:15760" ; level 2 ; orig_coord_info "chr2,188789863,188790104,-" ; tag basic ; transcript_id "PARD3B--DIRC1^ENST00000649108.1" ; transcript_name "DIRC1-201" ; transcript_type lncRNA
PARD3B--DIRC1 HAVANA RNA 41112 43148 . + . FI_gene_label "DIRC1^ENSG00000174325.6" ; ID "PARD3B--DIRC1^ENST00000649108.1" ; Parent "PARD3B--DIRC1^DIRC1^ENSG00000174325.6" ; exon_id "ENSE00001178008.1" ; exon_number 1 ; gene_id "PARD3B--DIRC1^DIRC1^ENSG00000174325.6" ; gene_name DIRC1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000132646.2" ; havana_transcript "OTTHUMT00000255897.2" ; hgnc_id "HGNC:15760" ; level 2 ; orig_coord_info "chr2,188789863,188790104,-" ; tag basic ; transcript_id "PARD3B--DIRC1^ENST00000649108.1" ; transcript_name "DIRC1-201" ; transcript_type lncRNA
L1 and L2 created:
RDM1--AC090503.2 HAVANA gene 10720 14776 . + . FI_gene_label "AC090503.2^ENSG00000258294.5" ; ID "RDM1--AC090503.2^AC090503.2^ENSG00000258294.5" ; exon_id "ENSE00002401497.1" ; exon_number 1 ; gene_id "RDM1--AC090503.2^AC090503.2^ENSG00000258294.5" ; gene_name "AC090503.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169671.1" ; havana_transcript "OTTHUMT00000405358.1" ; level 2 ; orig_coord_info "chr12,73143753,73143856,-" ; tag basic ; transcript_id "RDM1--AC090503.2^ENST00000551135.5" ; transcript_name "AC090503.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
RDM1--AC090503.2 HAVANA RNA 10720 14776 . + . FI_gene_label "AC090503.2^ENSG00000258294.5" ; ID "RDM1--AC090503.2^ENST00000551135.5" ; Parent "RDM1--AC090503.2^AC090503.2^ENSG00000258294.5" ; exon_id "ENSE00002401497.1" ; exon_number 1 ; gene_id "RDM1--AC090503.2^AC090503.2^ENSG00000258294.5" ; gene_name "AC090503.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169671.1" ; havana_transcript "OTTHUMT00000405358.1" ; level 2 ; orig_coord_info "chr12,73143753,73143856,-" ; tag basic ; transcript_id "RDM1--AC090503.2^ENST00000551135.5" ; transcript_name "AC090503.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
RDM1--AC133480.1 HAVANA gene 10718 11639 . + . FI_gene_label "AC133480.1^ENSG00000258235.1" ; ID "RDM1--AC133480.1^AC133480.1^ENSG00000258235.1" ; exon_id "ENSE00002420896.1" ; exon_number 1 ; gene_id "RDM1--AC133480.1^AC133480.1^ENSG00000258235.1" ; gene_name "AC133480.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169681.1" ; havana_transcript "OTTHUMT00000405391.1" ; level 2 ; orig_coord_info "chr12,72728785,72728844,-" ; tag basic ; transcript_id "RDM1--AC133480.1^ENST00000547563.1" ; transcript_name "AC133480.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
RDM1--AC133480.1 HAVANA RNA 10718 11639 . + . FI_gene_label "AC133480.1^ENSG00000258235.1" ; ID "RDM1--AC133480.1^ENST00000547563.1" ; Parent "RDM1--AC133480.1^AC133480.1^ENSG00000258235.1" ; exon_id "ENSE00002420896.1" ; exon_number 1 ; gene_id "RDM1--AC133480.1^AC133480.1^ENSG00000258235.1" ; gene_name "AC133480.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169681.1" ; havana_transcript "OTTHUMT00000405391.1" ; level 2 ; orig_coord_info "chr12,72728785,72728844,-" ; tag basic ; transcript_id "RDM1--AC133480.1^ENST00000547563.1" ; transcript_name "AC133480.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
RDM1P5--TAF15 HAVANA gene 11927 13102 . + . FI_gene_label "RDM1P5^ENSG00000263818.5" ; ID "RDM1P5--TAF15^RDM1P5^ENSG00000263818.5" ; exon_id "ENSE00002686265.1" ; exon_number 1 ; gene_id "RDM1P5--TAF15^RDM1P5^ENSG00000263818.5" ; gene_name RDM1P5 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000178956.1" ; havana_transcript "OTTHUMT00000444109.1" ; hgnc_id "HGNC:53921" ; level 2 ; orig_coord_info "chr17,39112015,39112190,+" ; tag basic ; transcript_id "RDM1P5--TAF15^ENST00000577328.1" ; transcript_name "RDM1P5-201" ; transcript_support_level 4 ; transcript_type processed_transcript
RDM1P5--TAF15 HAVANA RNA 11927 13102 . + . FI_gene_label "RDM1P5^ENSG00000263818.5" ; ID "RDM1P5--TAF15^ENST00000577328.1" ; Parent "RDM1P5--TAF15^RDM1P5^ENSG00000263818.5" ; exon_id "ENSE00002686265.1" ; exon_number 1 ; gene_id "RDM1P5--TAF15^RDM1P5^ENSG00000263818.5" ; gene_name RDM1P5 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000178956.1" ; havana_transcript "OTTHUMT00000444109.1" ; hgnc_id "HGNC:53921" ; level 2 ; orig_coord_info "chr17,39112015,39112190,+" ; tag basic ; transcript_id "RDM1P5--TAF15^ENST00000577328.1" ; transcript_name "RDM1P5-201" ; transcript_support_level 4 ; transcript_type processed_transcript
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
652 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
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------------------------------ Check8: check cds -------------------------------
No problem found
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----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
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----------------------------- Check10: check utrs ------------------------------
1530 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
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------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 49 wrong level1 location cases
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---------------------- Check13: remove identical isoforms ----------------------
None found
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------ End checks (done in 1 second) ------
GFF3 file parsed