File Info

Filename
aih-tih-sc-6832bb-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/96b2f7d42b0a412d4b6ba5b2ca7e70/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:54:58
                             Started mapping on |	Jun 08 07:57:32
                                    Finished on |	Jun 08 08:39:26
       Mapping speed, Million of reads per hour |	424.20

                          Number of input reads |	296232854
                      Average input read length |	248
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285169523
                        Uniquely mapped reads % |	96.27%
                          Average mapped length |	247.39
                       Number of splices: Total |	342770904
            Number of splices: Annotated (sjdb) |	338945550
                       Number of splices: GT/AG |	339334474
                       Number of splices: GC/AG |	2398761
                       Number of splices: AT/AC |	241716
               Number of splices: Non-canonical |	795953
                      Mismatch rate per base, % |	0.18%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.06
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.45
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5983955
             % of reads mapped to multiple loci |	2.02%
        Number of reads mapped to too many loci |	143999
             % of reads mapped to too many loci |	0.05%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	430036
       % of reads unmapped: too many mismatches |	0.15%
            Number of reads unmapped: too short |	2255221
                 % of reads unmapped: too short |	0.76%
                Number of reads unmapped: other |	148074
                     % of reads unmapped: other |	0.05%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3805160
                            % of chimeric reads |	1.28%