Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/1b7b95e236f6c6901018dddb78955c/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/e27997d023b6da40d08c567746d92c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/e27997d023b6da40d08c567746d92c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/18f6ba4edcdc30a4d4b79ec1baa49d/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (17574097) splicing reads. 261512 splicing junctions. 188295 known splicing junctions. 73217 novel splicing junctions.
sampling 10% (35148195) splicing reads. 318630 splicing junctions. 200844 known splicing junctions. 117786 novel splicing junctions.
sampling 15% (52722292) splicing reads. 359447 splicing junctions. 207672 known splicing junctions. 151775 novel splicing junctions.
sampling 20% (70296390) splicing reads. 391332 splicing junctions. 212222 known splicing junctions. 179110 novel splicing junctions.
sampling 25% (87870488) splicing reads. 417388 splicing junctions. 215447 known splicing junctions. 201941 novel splicing junctions.
sampling 30% (105444585) splicing reads. 439585 splicing junctions. 217972 known splicing junctions. 221613 novel splicing junctions.
sampling 35% (123018683) splicing reads. 458844 splicing junctions. 220082 known splicing junctions. 238762 novel splicing junctions.
sampling 40% (140592780) splicing reads. 475301 splicing junctions. 221621 known splicing junctions. 253680 novel splicing junctions.
sampling 45% (158166878) splicing reads. 489650 splicing junctions. 222974 known splicing junctions. 266676 novel splicing junctions.
sampling 50% (175740976) splicing reads. 502367 splicing junctions. 224107 known splicing junctions. 278260 novel splicing junctions.
sampling 55% (193315073) splicing reads. 513417 splicing junctions. 225090 known splicing junctions. 288327 novel splicing junctions.
sampling 60% (210889171) splicing reads. 523326 splicing junctions. 225979 known splicing junctions. 297347 novel splicing junctions.
sampling 65% (228463268) splicing reads. 532063 splicing junctions. 226669 known splicing junctions. 305394 novel splicing junctions.
sampling 70% (246037366) splicing reads. 539832 splicing junctions. 227305 known splicing junctions. 312527 novel splicing junctions.
sampling 75% (263611464) splicing reads. 546646 splicing junctions. 227837 known splicing junctions. 318809 novel splicing junctions.
sampling 80% (281185561) splicing reads. 552644 splicing junctions. 228326 known splicing junctions. 324318 novel splicing junctions.
sampling 85% (298759659) splicing reads. 557803 splicing junctions. 228698 known splicing junctions. 329105 novel splicing junctions.
sampling 90% (316333756) splicing reads. 562153 splicing junctions. 229003 known splicing junctions. 333150 novel splicing junctions.
sampling 95% (333907854) splicing reads. 565869 splicing junctions. 229275 known splicing junctions. 336594 novel splicing junctions.
sampling 100% (351481952) splicing reads. 568960 splicing junctions. 229514 known splicing junctions. 339446 novel splicing junctions.
null device 
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