File Info

Filename
aih-tih-sc-4e749e-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/73ebe6b28cd9f12f59765621def3cd/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:54:25
                             Started mapping on |	Jun 08 07:56:48
                                    Finished on |	Jun 08 08:56:17
       Mapping speed, Million of reads per hour |	298.25

                          Number of input reads |	295683184
                      Average input read length |	259
                                    UNIQUE READS:
                   Uniquely mapped reads number |	281635134
                        Uniquely mapped reads % |	95.25%
                          Average mapped length |	259.48
                       Number of splices: Total |	325904843
            Number of splices: Annotated (sjdb) |	320912145
                       Number of splices: GT/AG |	323177189
                       Number of splices: GC/AG |	1972945
                       Number of splices: AT/AC |	201308
               Number of splices: Non-canonical |	553401
                      Mismatch rate per base, % |	0.19%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.09
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.67
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8990050
             % of reads mapped to multiple loci |	3.04%
        Number of reads mapped to too many loci |	157457
             % of reads mapped to too many loci |	0.05%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	555521
       % of reads unmapped: too many mismatches |	0.19%
            Number of reads unmapped: too short |	2462452
                 % of reads unmapped: too short |	0.83%
                Number of reads unmapped: other |	188732
                     % of reads unmapped: other |	0.06%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3394529
                            % of chimeric reads |	1.15%