File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/9f2013e2eac2cb1066a1534d6aa6a4/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-0ce15f-R1_A23WJ53LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/9f2013e2eac2cb1066a1534d6aa6a4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/cfb3dfa567fd7b66a074eb35a02271/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/9f2013e2eac2cb1066a1534d6aa6a4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/e03d778989310adaea80d7dc46c6ab/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 147157996
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	147157996
Known Splicing Events:	145367245
Partial Novel Splicing Events:	801178
Novel Splicing Events:	927402
Filtered Splicing Events:	62171

Total splicing  Junctions:	354695
Known Splicing Junctions:	231352
Partial Novel Splicing Junctions:	76011
Novel Splicing Junctions:	47332

===================================================================
Create BED file ...
Create Interact file ...