Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-2798bb-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-2798bb-R1_A23WJ53LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 08:55:21.020 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 08:55:21 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-2798bb-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-2798bb-R1_A23WJ53LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 08:55:21 GMT 2026] Executing as ?@nf-341551c11dc194076a5aecead03a3a26-487cd-srvx6 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 08:55:21 MarkDuplicates Start of doWork freeMemory: 105493056; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 08:55:21 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 08:55:21 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 08:55:25 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,353,800 INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 2520 as yet unmatched pairs. 367 records in RAM. INFO 2026-06-08 08:55:27 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,303,882 INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 4815 as yet unmatched pairs. 667 records in RAM. INFO 2026-06-08 08:55:29 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:6,468,222 INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 6864 as yet unmatched pairs. 402 records in RAM. INFO 2026-06-08 08:55:32 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:9,111,275 INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 8532 as yet unmatched pairs. 283 records in RAM. INFO 2026-06-08 08:55:33 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:11,736,213 INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 11060 as yet unmatched pairs. 836 records in RAM. INFO 2026-06-08 08:55:35 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:15,727,515 INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 12461 as yet unmatched pairs. 225 records in RAM. INFO 2026-06-08 08:55:37 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:17,027,777 INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 14533 as yet unmatched pairs. 467 records in RAM. INFO 2026-06-08 08:55:39 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:19,378,572 INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 17154 as yet unmatched pairs. 1152 records in RAM. INFO 2026-06-08 08:55:41 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:21,560,685 INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 17979 as yet unmatched pairs. 210 records in RAM. INFO 2026-06-08 08:55:43 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:22,118,368 INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 19776 as yet unmatched pairs. 66 records in RAM. INFO 2026-06-08 08:55:45 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:23,092,472 INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 21815 as yet unmatched pairs. 253 records in RAM. INFO 2026-06-08 08:55:47 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:25,300,886 INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 23277 as yet unmatched pairs. 64 records in RAM. INFO 2026-06-08 08:55:49 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:26,832,504 INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 25163 as yet unmatched pairs. 164 records in RAM. INFO 2026-06-08 08:55:51 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:28,742,552 INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 27931 as yet unmatched pairs. 941 records in RAM. INFO 2026-06-08 08:55:54 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:31,790,606 INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 29100 as yet unmatched pairs. 143 records in RAM. INFO 2026-06-08 08:55:56 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:32,895,410 INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 31919 as yet unmatched pairs. 1131 records in RAM. INFO 2026-06-08 08:55:57 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:36,171,179 INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 33061 as yet unmatched pairs. 293 records in RAM. INFO 2026-06-08 08:55:59 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:39,334,320 INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 35462 as yet unmatched pairs. 844 records in RAM. INFO 2026-06-08 08:56:00 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:40,069,777 INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 37283 as yet unmatched pairs. 937 records in RAM. INFO 2026-06-08 08:56:02 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:42,958,645 INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 39866 as yet unmatched pairs. 1627 records in RAM. INFO 2026-06-08 08:56:04 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:43,981,283 INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 41228 as yet unmatched pairs. 925 records in RAM. INFO 2026-06-08 08:56:05 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:46,032,200 INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 42527 as yet unmatched pairs. 433 records in RAM. INFO 2026-06-08 08:56:07 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:51,784,472 INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 44349 as yet unmatched pairs. 352 records in RAM. INFO 2026-06-08 08:56:09 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:54,886,966 INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 46251 as yet unmatched pairs. 483 records in RAM. INFO 2026-06-08 08:56:12 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:63,654,442 INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 47929 as yet unmatched pairs. 401 records in RAM. INFO 2026-06-08 08:56:13 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:77,966,720 INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 49678 as yet unmatched pairs. 630 records in RAM. INFO 2026-06-08 08:56:15 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:92,075,118 INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 50732 as yet unmatched pairs. 26 records in RAM. INFO 2026-06-08 08:56:17 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:100,274,895 INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 52542 as yet unmatched pairs. 296 records in RAM. INFO 2026-06-08 08:56:18 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:109,629,413 INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 53876 as yet unmatched pairs. 95 records in RAM. INFO 2026-06-08 08:56:21 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:112,694,707 INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 55698 as yet unmatched pairs. 221 records in RAM. INFO 2026-06-08 08:56:24 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:114,723,913 INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 59402 as yet unmatched pairs. 2070 records in RAM. INFO 2026-06-08 08:56:25 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:119,721,235 INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 59542 as yet unmatched pairs. 489 records in RAM. INFO 2026-06-08 08:56:27 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:120,176,349 INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 60898 as yet unmatched pairs. 39 records in RAM. INFO 2026-06-08 08:56:28 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:145,995,184 INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 63936 as yet unmatched pairs. 2009 records in RAM. INFO 2026-06-08 08:56:30 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:148,555,094 INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 62862 as yet unmatched pairs. 123 records in RAM. INFO 2026-06-08 08:56:31 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,312 INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 64731 as yet unmatched pairs. 954 records in RAM. INFO 2026-06-08 08:56:33 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:150,577,485 INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 65991 as yet unmatched pairs. 756 records in RAM. INFO 2026-06-08 08:56:34 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:151,406,212 INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 67336 as yet unmatched pairs. 272 records in RAM. INFO 2026-06-08 08:56:36 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:153,948,105 INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 69138 as yet unmatched pairs. 363 records in RAM. INFO 2026-06-08 08:56:39 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:154,268,887 INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 71150 as yet unmatched pairs. 605 records in RAM. INFO 2026-06-08 08:56:41 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:155,172,613 INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 75000 as yet unmatched pairs. 2505 records in RAM. INFO 2026-06-08 08:56:43 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:155,753,274 INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 74340 as yet unmatched pairs. 252 records in RAM. INFO 2026-06-08 08:56:45 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:156,137,138 INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 79888 as yet unmatched pairs. 3677 records in RAM. INFO 2026-06-08 08:56:46 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:157,124,822 INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 78262 as yet unmatched pairs. 149 records in RAM. INFO 2026-06-08 08:56:48 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:161,048,581 INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 80015 as yet unmatched pairs. 71 records in RAM. INFO 2026-06-08 08:56:50 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:164,849,247 INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 81582 as yet unmatched pairs. 47 records in RAM. INFO 2026-06-08 08:56:52 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:169,130,021 INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 94212 as yet unmatched pairs. 10807 records in RAM. INFO 2026-06-08 08:56:53 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:173,970,509 INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 85103 as yet unmatched pairs. 105 records in RAM. INFO 2026-06-08 08:56:55 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:182,388,638 INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 87898 as yet unmatched pairs. 1003 records in RAM. INFO 2026-06-08 08:56:57 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:186,093,205 INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 88678 as yet unmatched pairs. 146 records in RAM. INFO 2026-06-08 08:56:58 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:197,143,382 INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 90071 as yet unmatched pairs. 220 records in RAM. INFO 2026-06-08 08:57:00 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:202,012,398 INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 92467 as yet unmatched pairs. 762 records in RAM. INFO 2026-06-08 08:57:01 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:203,852,160 INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 95074 as yet unmatched pairs. 1678 records in RAM. INFO 2026-06-08 08:57:03 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:206,930,231 INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 95963 as yet unmatched pairs. 790 records in RAM. INFO 2026-06-08 08:57:05 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr1:209,634,561 INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 97616 as yet unmatched pairs. 671 records in RAM. INFO 2026-06-08 08:57:07 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:222,628,728 INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 98773 as yet unmatched pairs. 21 records in RAM. INFO 2026-06-08 08:57:09 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:225,920,458 INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 100684 as yet unmatched pairs. 231 records in RAM. INFO 2026-06-08 08:57:10 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:228,493,199 INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 103681 as yet unmatched pairs. 1188 records in RAM. INFO 2026-06-08 08:57:12 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:234,609,083 INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 104775 as yet unmatched pairs. 144 records in RAM. INFO 2026-06-08 08:57:14 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:244,855,498 INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 106765 as yet unmatched pairs. 465 records in RAM. INFO 2026-06-08 08:57:17 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 3s. Last read position: chr2:3,575,601 INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 110836 as yet unmatched pairs. 109721 records in RAM. INFO 2026-06-08 08:57:19 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:11,344,070 INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 110562 as yet unmatched pairs. 109434 records in RAM. INFO 2026-06-08 08:57:21 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:22,103,383 INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 111697 as yet unmatched pairs. 110550 records in RAM. INFO 2026-06-08 08:57:23 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:27,071,341 INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 114085 as yet unmatched pairs. 112929 records in RAM. INFO 2026-06-08 08:57:25 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr2:28,412,127 INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 117109 as yet unmatched pairs. 115915 records in RAM. INFO 2026-06-08 08:57:27 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:32,515,043 INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 117828 as yet unmatched pairs. 116617 records in RAM. INFO 2026-06-08 08:57:29 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 391946 as yet unmatched pairs. 101219 records in RAM. INFO 2026-06-08 08:57:30 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,404 INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 938620 as yet unmatched pairs. 71803 records in RAM. INFO 2026-06-08 08:57:32 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 943707 as yet unmatched pairs. 71503 records in RAM. INFO 2026-06-08 08:57:33 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:38,070,984 INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 997379 as yet unmatched pairs. 67418 records in RAM. INFO 2026-06-08 08:57:35 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:43,231,256 INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 995610 as yet unmatched pairs. 65628 records in RAM. INFO 2026-06-08 08:57:37 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:47,161,725 INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 995268 as yet unmatched pairs. 65272 records in RAM. INFO 2026-06-08 08:57:38 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:54,629,544 INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 993499 as yet unmatched pairs. 63493 records in RAM. INFO 2026-06-08 08:57:40 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:55,519,806 INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 990200 as yet unmatched pairs. 60186 records in RAM. INFO 2026-06-08 08:57:42 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:63,962,112 INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 988777 as yet unmatched pairs. 58754 records in RAM. INFO 2026-06-08 08:57:44 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:70,124,924 INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 986835 as yet unmatched pairs. 56798 records in RAM. INFO 2026-06-08 08:57:47 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 2s. Last read position: chr2:74,211,276 INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 985660 as yet unmatched pairs. 55600 records in RAM. INFO 2026-06-08 08:57:49 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr2:85,322,712 INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 983942 as yet unmatched pairs. 53864 records in RAM. INFO 2026-06-08 08:57:51 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:85,663,798 INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 990052 as yet unmatched pairs. 59952 records in RAM. INFO 2026-06-08 08:57:53 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:86,605,077 INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 979581 as yet unmatched pairs. 49471 records in RAM. INFO 2026-06-08 08:57:54 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:96,285,058 INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 978372 as yet unmatched pairs. 48212 records in RAM. INFO 2026-06-08 08:57:56 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:99,389,772 INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 976462 as yet unmatched pairs. 46280 records in RAM. INFO 2026-06-08 08:57:58 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:107,871,677 INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 974649 as yet unmatched pairs. 44439 records in RAM. INFO 2026-06-08 08:58:00 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:108,782,655 INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 974565 as yet unmatched pairs. 44352 records in RAM. INFO 2026-06-08 08:58:02 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:112,001,223 INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 972514 as yet unmatched pairs. 42294 records in RAM. INFO 2026-06-08 08:58:03 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:118,977,891 INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 971169 as yet unmatched pairs. 40933 records in RAM. INFO 2026-06-08 08:58:05 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:128,155,499 INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 969579 as yet unmatched pairs. 39307 records in RAM. INFO 2026-06-08 08:58:07 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 2s. Last read position: chr2:144,398,747 INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 967946 as yet unmatched pairs. 37648 records in RAM. INFO 2026-06-08 08:58:09 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:159,453,759 INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 966443 as yet unmatched pairs. 36120 records in RAM. INFO 2026-06-08 08:58:11 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:170,993,683 INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 964438 as yet unmatched pairs. 34089 records in RAM. INFO 2026-06-08 08:58:12 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:177,219,108 INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 963342 as yet unmatched pairs. 32981 records in RAM. INFO 2026-06-08 08:58:14 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:183,002,240 INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 962364 as yet unmatched pairs. 31974 records in RAM. INFO 2026-06-08 08:58:16 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:189,728,770 INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 959601 as yet unmatched pairs. 29202 records in RAM. INFO 2026-06-08 08:58:18 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:197,490,201 INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 958788 as yet unmatched pairs. 28354 records in RAM. INFO 2026-06-08 08:58:21 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:202,287,690 INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 956675 as yet unmatched pairs. 26220 records in RAM. INFO 2026-06-08 08:58:23 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:207,767,785 INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 954935 as yet unmatched pairs. 24434 records in RAM. INFO 2026-06-08 08:58:25 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr2:215,367,948 INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 962640 as yet unmatched pairs. 32120 records in RAM. INFO 2026-06-08 08:58:27 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,355 INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 958032 as yet unmatched pairs. 27511 records in RAM. INFO 2026-06-08 08:58:29 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,383,367 INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 958215 as yet unmatched pairs. 27692 records in RAM. INFO 2026-06-08 08:58:31 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,190 INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 964952 as yet unmatched pairs. 34420 records in RAM. INFO 2026-06-08 08:58:33 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,319 INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 961379 as yet unmatched pairs. 30844 records in RAM. INFO 2026-06-08 08:58:35 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:215,424,217 INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 954037 as yet unmatched pairs. 23494 records in RAM. INFO 2026-06-08 08:58:36 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:216,162,025 INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 945043 as yet unmatched pairs. 14494 records in RAM. INFO 2026-06-08 08:58:38 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:218,272,624 INFO 2026-06-08 08:58:38 MarkDuplicates Tracking 942583 as yet unmatched pairs. 12011 records in RAM. INFO 2026-06-08 08:58:40 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:219,224,567 INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 940657 as yet unmatched pairs. 10067 records in RAM. INFO 2026-06-08 08:58:42 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:226,864,940 INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 938629 as yet unmatched pairs. 8007 records in RAM. INFO 2026-06-08 08:58:44 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:231,459,001 INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 938686 as yet unmatched pairs. 8047 records in RAM. INFO 2026-06-08 08:58:47 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 3s. Last read position: chr2:236,581,272 INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 935330 as yet unmatched pairs. 4676 records in RAM. INFO 2026-06-08 08:58:49 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:238,277,861 INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 933242 as yet unmatched pairs. 2548 records in RAM. INFO 2026-06-08 08:58:51 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:241,463,392 INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 931441 as yet unmatched pairs. 718 records in RAM. INFO 2026-06-08 08:58:53 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr3:9,780,372 INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 929976 as yet unmatched pairs. 52318 records in RAM. INFO 2026-06-08 08:58:55 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:12,618,631 INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 928750 as yet unmatched pairs. 51064 records in RAM. INFO 2026-06-08 08:58:57 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:17,406,513 INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 926213 as yet unmatched pairs. 48490 records in RAM. INFO 2026-06-08 08:58:59 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:33,134,182 INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 925079 as yet unmatched pairs. 47314 records in RAM. INFO 2026-06-08 08:59:01 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:39,102,838 INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 922869 as yet unmatched pairs. 45086 records in RAM. INFO 2026-06-08 08:59:03 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr3:41,236,392 INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 923817 as yet unmatched pairs. 46024 records in RAM. INFO 2026-06-08 08:59:05 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr3:45,967,894 INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 919323 as yet unmatched pairs. 41493 records in RAM. INFO 2026-06-08 08:59:07 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:47,720,672 INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 917645 as yet unmatched pairs. 39807 records in RAM. INFO 2026-06-08 08:59:09 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:48,628,518 INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 915524 as yet unmatched pairs. 37653 records in RAM. INFO 2026-06-08 08:59:11 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:49,116,583 INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 913272 as yet unmatched pairs. 35385 records in RAM. INFO 2026-06-08 08:59:13 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:49,808,029 INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 911643 as yet unmatched pairs. 33728 records in RAM. INFO 2026-06-08 08:59:15 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:51,393,773 INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 910046 as yet unmatched pairs. 32124 records in RAM. INFO 2026-06-08 08:59:17 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:52,489,485 INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 907877 as yet unmatched pairs. 29939 records in RAM. INFO 2026-06-08 08:59:21 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 3s. Last read position: chr3:56,633,327 INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 906199 as yet unmatched pairs. 28223 records in RAM. INFO 2026-06-08 08:59:23 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr3:61,748,917 INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 904313 as yet unmatched pairs. 26303 records in RAM. INFO 2026-06-08 08:59:25 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:86,978,651 INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 902323 as yet unmatched pairs. 24278 records in RAM. INFO 2026-06-08 08:59:27 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:101,682,771 INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 904334 as yet unmatched pairs. 26278 records in RAM. INFO 2026-06-08 08:59:29 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:119,380,954 INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 899226 as yet unmatched pairs. 21145 records in RAM. INFO 2026-06-08 08:59:31 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:123,291,230 INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 897677 as yet unmatched pairs. 19569 records in RAM. INFO 2026-06-08 08:59:33 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:127,018,287 INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 896009 as yet unmatched pairs. 17889 records in RAM. INFO 2026-06-08 08:59:34 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:129,260,638 INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 894415 as yet unmatched pairs. 16289 records in RAM. INFO 2026-06-08 08:59:36 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:133,935,888 INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 892495 as yet unmatched pairs. 14355 records in RAM. INFO 2026-06-08 08:59:38 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:142,404,936 INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 890751 as yet unmatched pairs. 12599 records in RAM. INFO 2026-06-08 08:59:40 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:150,742,330 INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 889125 as yet unmatched pairs. 10951 records in RAM. INFO 2026-06-08 08:59:42 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:169,121,084 INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 887603 as yet unmatched pairs. 9411 records in RAM. INFO 2026-06-08 08:59:43 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:179,618,502 INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 885851 as yet unmatched pairs. 7613 records in RAM. INFO 2026-06-08 08:59:46 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr3:184,317,739 INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 885075 as yet unmatched pairs. 6804 records in RAM. INFO 2026-06-08 08:59:49 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr3:186,789,151 INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 882913 as yet unmatched pairs. 4637 records in RAM. INFO 2026-06-08 08:59:51 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:195,618,742 INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 881438 as yet unmatched pairs. 3146 records in RAM. INFO 2026-06-08 08:59:52 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr3:195,883,237 INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 879928 as yet unmatched pairs. 1628 records in RAM. INFO 2026-06-08 08:59:54 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 2s. Last read position: chr4:686,637 INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 878372 as yet unmatched pairs. 31572 records in RAM. INFO 2026-06-08 08:59:56 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:1,814,457 INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 875879 as yet unmatched pairs. 29073 records in RAM. INFO 2026-06-08 08:59:58 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:4,279,698 INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 873880 as yet unmatched pairs. 27056 records in RAM. INFO 2026-06-08 09:00:00 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:10,097,710 INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 872875 as yet unmatched pairs. 26034 records in RAM. INFO 2026-06-08 09:00:02 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:25,662,561 INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 876217 as yet unmatched pairs. 29369 records in RAM. INFO 2026-06-08 09:00:04 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:25,673,105 INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 889974 as yet unmatched pairs. 43120 records in RAM. INFO 2026-06-08 09:00:05 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:25,678,564 INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 869243 as yet unmatched pairs. 22378 records in RAM. INFO 2026-06-08 09:00:07 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:40,436,441 INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 865423 as yet unmatched pairs. 18516 records in RAM. INFO 2026-06-08 09:00:09 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:54,285,856 INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 864761 as yet unmatched pairs. 17846 records in RAM. INFO 2026-06-08 09:00:11 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr4:70,831,580 INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 862697 as yet unmatched pairs. 15756 records in RAM. INFO 2026-06-08 09:00:13 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:77,019,185 INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 860826 as yet unmatched pairs. 13864 records in RAM. INFO 2026-06-08 09:00:16 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr4:86,594,476 INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 859391 as yet unmatched pairs. 12409 records in RAM. INFO 2026-06-08 09:00:18 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr4:98,881,133 INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 857723 as yet unmatched pairs. 10728 records in RAM. INFO 2026-06-08 09:00:20 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr4:108,622,107 INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 858643 as yet unmatched pairs. 11638 records in RAM. INFO 2026-06-08 09:00:22 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr4:122,246,175 INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 854191 as yet unmatched pairs. 7175 records in RAM. INFO 2026-06-08 09:00:23 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr4:143,187,920 INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 852447 as yet unmatched pairs. 5407 records in RAM. INFO 2026-06-08 09:00:25 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:151,104,533 INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 850918 as yet unmatched pairs. 3864 records in RAM. INFO 2026-06-08 09:00:27 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr4:168,471,919 INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 849409 as yet unmatched pairs. 2321 records in RAM. INFO 2026-06-08 09:00:29 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr4:186,603,513 INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 847966 as yet unmatched pairs. 868 records in RAM. INFO 2026-06-08 09:00:31 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr5:1,814,354 INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 845760 as yet unmatched pairs. 50019 records in RAM. INFO 2026-06-08 09:00:33 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr5:14,330,861 INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 845081 as yet unmatched pairs. 49322 records in RAM. INFO 2026-06-08 09:00:35 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:14,711,194 INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 842359 as yet unmatched pairs. 46599 records in RAM. INFO 2026-06-08 09:00:37 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:36,971,972 INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 840787 as yet unmatched pairs. 45005 records in RAM. INFO 2026-06-08 09:00:39 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr5:43,298,541 INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 839246 as yet unmatched pairs. 43445 records in RAM. INFO 2026-06-08 09:00:42 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr5:60,918,312 INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 837408 as yet unmatched pairs. 41590 records in RAM. INFO 2026-06-08 09:00:44 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr5:70,764,585 INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 836015 as yet unmatched pairs. 40179 records in RAM. INFO 2026-06-08 09:00:46 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:75,360,287 INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 834669 as yet unmatched pairs. 38807 records in RAM. INFO 2026-06-08 09:00:48 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,467 INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 840553 as yet unmatched pairs. 44684 records in RAM. INFO 2026-06-08 09:00:50 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr5:96,729,199 INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 832321 as yet unmatched pairs. 36411 records in RAM. INFO 2026-06-08 09:00:52 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:112,878,724 INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 830354 as yet unmatched pairs. 34421 records in RAM. INFO 2026-06-08 09:00:54 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:128,131,090 INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 828979 as yet unmatched pairs. 33033 records in RAM. INFO 2026-06-08 09:00:56 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:133,972,818 INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 827877 as yet unmatched pairs. 31921 records in RAM. INFO 2026-06-08 09:00:58 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:137,877,579 INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 824658 as yet unmatched pairs. 28683 records in RAM. INFO 2026-06-08 09:00:59 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:139,394,753 INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 823075 as yet unmatched pairs. 27092 records in RAM. INFO 2026-06-08 09:01:02 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr5:141,225,285 INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 821455 as yet unmatched pairs. 25444 records in RAM. INFO 2026-06-08 09:01:05 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr5:142,770,845 INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 819892 as yet unmatched pairs. 23859 records in RAM. INFO 2026-06-08 09:01:07 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr5:150,050,258 INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 818078 as yet unmatched pairs. 22036 records in RAM. INFO 2026-06-08 09:01:09 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,170 INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 840485 as yet unmatched pairs. 44442 records in RAM. INFO 2026-06-08 09:01:11 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,102 INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 837670 as yet unmatched pairs. 41615 records in RAM. INFO 2026-06-08 09:01:13 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,306 INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 812634 as yet unmatched pairs. 16547 records in RAM. INFO 2026-06-08 09:01:15 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:151,205,447 INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 810353 as yet unmatched pairs. 14262 records in RAM. INFO 2026-06-08 09:01:17 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:160,043,150 INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 808674 as yet unmatched pairs. 12564 records in RAM. INFO 2026-06-08 09:01:19 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr5:171,387,996 INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 829528 as yet unmatched pairs. 33405 records in RAM. INFO 2026-06-08 09:01:21 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr5:171,407,700 INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 820916 as yet unmatched pairs. 24788 records in RAM. INFO 2026-06-08 09:01:23 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:176,969,006 INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 804299 as yet unmatched pairs. 8150 records in RAM. INFO 2026-06-08 09:01:25 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:178,211,880 INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 802491 as yet unmatched pairs. 6329 records in RAM. INFO 2026-06-08 09:01:27 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr5:179,820,990 INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 815809 as yet unmatched pairs. 19640 records in RAM. INFO 2026-06-08 09:01:29 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,643 INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 799156 as yet unmatched pairs. 2969 records in RAM. INFO 2026-06-08 09:01:30 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr5:181,242,298 INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 800128 as yet unmatched pairs. 3925 records in RAM. INFO 2026-06-08 09:01:33 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 2s. Last read position: chr6:7,230,130 INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 795268 as yet unmatched pairs. 54463 records in RAM. INFO 2026-06-08 09:01:34 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:12,120,661 INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 792551 as yet unmatched pairs. 51740 records in RAM. INFO 2026-06-08 09:01:36 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:25,178,204 INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 790709 as yet unmatched pairs. 49875 records in RAM. INFO 2026-06-08 09:01:38 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:27,146,480 INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 791437 as yet unmatched pairs. 50601 records in RAM. INFO 2026-06-08 09:01:40 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,547 INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 790652 as yet unmatched pairs. 49812 records in RAM. INFO 2026-06-08 09:01:42 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr6:30,601,473 INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 785903 as yet unmatched pairs. 45059 records in RAM. INFO 2026-06-08 09:01:45 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr6:31,271,117 INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 789007 as yet unmatched pairs. 48143 records in RAM. INFO 2026-06-08 09:01:47 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:31,632,936 INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 783664 as yet unmatched pairs. 42790 records in RAM. INFO 2026-06-08 09:01:49 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,425 INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 780539 as yet unmatched pairs. 39657 records in RAM. INFO 2026-06-08 09:01:50 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:31,960,018 INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 779738 as yet unmatched pairs. 38840 records in RAM. INFO 2026-06-08 09:01:52 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:32,179,890 INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 777593 as yet unmatched pairs. 36684 records in RAM. INFO 2026-06-08 09:01:54 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:32,847,556 INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 776081 as yet unmatched pairs. 35161 records in RAM. INFO 2026-06-08 09:01:56 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:33,290,716 INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 773754 as yet unmatched pairs. 32825 records in RAM. INFO 2026-06-08 09:01:58 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:33,686,130 INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 773061 as yet unmatched pairs. 32123 records in RAM. INFO 2026-06-08 09:02:00 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:36,200,329 INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 770064 as yet unmatched pairs. 29106 records in RAM. INFO 2026-06-08 09:02:02 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr6:41,935,861 INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 768251 as yet unmatched pairs. 27274 records in RAM. INFO 2026-06-08 09:02:04 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr6:43,503,632 INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 766289 as yet unmatched pairs. 25302 records in RAM. INFO 2026-06-08 09:02:07 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr6:44,256,354 INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 764765 as yet unmatched pairs. 23770 records in RAM. INFO 2026-06-08 09:02:08 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:56,506,448 INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 763079 as yet unmatched pairs. 22011 records in RAM. INFO 2026-06-08 09:02:10 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:73,785,364 INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 761271 as yet unmatched pairs. 20176 records in RAM. INFO 2026-06-08 09:02:12 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:85,615,046 INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 760013 as yet unmatched pairs. 18885 records in RAM. INFO 2026-06-08 09:02:14 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:99,562,864 INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 758341 as yet unmatched pairs. 17195 records in RAM. INFO 2026-06-08 09:02:16 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:109,796,683 INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 756418 as yet unmatched pairs. 15245 records in RAM. INFO 2026-06-08 09:02:18 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:117,385,706 INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 755086 as yet unmatched pairs. 13895 records in RAM. INFO 2026-06-08 09:02:19 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr6:129,516,265 INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 752943 as yet unmatched pairs. 11743 records in RAM. INFO 2026-06-08 09:02:21 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr6:136,383,727 INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 751814 as yet unmatched pairs. 10607 records in RAM. INFO 2026-06-08 09:02:23 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr6:144,200,446 INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 749376 as yet unmatched pairs. 8146 records in RAM. INFO 2026-06-08 09:02:25 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:151,349,663 INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 748189 as yet unmatched pairs. 6952 records in RAM. INFO 2026-06-08 09:02:27 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr6:158,503,115 INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 746127 as yet unmatched pairs. 4875 records in RAM. INFO 2026-06-08 09:02:29 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr6:159,753,387 INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 744402 as yet unmatched pairs. 3127 records in RAM. INFO 2026-06-08 09:02:31 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr6:167,946,888 INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 742783 as yet unmatched pairs. 1495 records in RAM. INFO 2026-06-08 09:02:34 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr7:1,442,151 INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 740697 as yet unmatched pairs. 53339 records in RAM. INFO 2026-06-08 09:02:35 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:5,312,711 INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 739162 as yet unmatched pairs. 51800 records in RAM. INFO 2026-06-08 09:02:37 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,020 INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 755609 as yet unmatched pairs. 68237 records in RAM. INFO 2026-06-08 09:02:39 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,331 INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 752571 as yet unmatched pairs. 65193 records in RAM. INFO 2026-06-08 09:02:41 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:10,983,052 INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 732855 as yet unmatched pairs. 45472 records in RAM. INFO 2026-06-08 09:02:43 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:26,192,310 INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 732056 as yet unmatched pairs. 44659 records in RAM. INFO 2026-06-08 09:02:45 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr7:32,869,747 INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 729785 as yet unmatched pairs. 42353 records in RAM. INFO 2026-06-08 09:02:47 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:44,074,378 INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 727891 as yet unmatched pairs. 40451 records in RAM. INFO 2026-06-08 09:02:48 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:45,104,576 INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 727002 as yet unmatched pairs. 39534 records in RAM. INFO 2026-06-08 09:02:51 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr7:56,051,901 INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 725047 as yet unmatched pairs. 37560 records in RAM. INFO 2026-06-08 09:02:53 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr7:73,069,348 INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 722618 as yet unmatched pairs. 35113 records in RAM. INFO 2026-06-08 09:02:55 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:74,105,908 INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 721138 as yet unmatched pairs. 33612 records in RAM. INFO 2026-06-08 09:02:57 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:75,423,026 INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 720316 as yet unmatched pairs. 32772 records in RAM. INFO 2026-06-08 09:02:58 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:77,002,298 INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 718245 as yet unmatched pairs. 30699 records in RAM. INFO 2026-06-08 09:03:00 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr7:92,040,767 INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 716602 as yet unmatched pairs. 29031 records in RAM. INFO 2026-06-08 09:03:02 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr7:95,269,388 INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 714796 as yet unmatched pairs. 27209 records in RAM. INFO 2026-06-08 09:03:04 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr7:99,459,237 INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 713874 as yet unmatched pairs. 26278 records in RAM. INFO 2026-06-08 09:03:05 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr7:100,577,509 INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 711563 as yet unmatched pairs. 23962 records in RAM. INFO 2026-06-08 09:03:07 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 2s. Last read position: chr7:100,992,910 INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 712090 as yet unmatched pairs. 24482 records in RAM. INFO 2026-06-08 09:03:09 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,154 INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 710121 as yet unmatched pairs. 22504 records in RAM. INFO 2026-06-08 09:03:10 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,679 INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 712907 as yet unmatched pairs. 25290 records in RAM. INFO 2026-06-08 09:03:11 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,037 INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 712917 as yet unmatched pairs. 25298 records in RAM. INFO 2026-06-08 09:03:13 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,683 INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 714092 as yet unmatched pairs. 26469 records in RAM. INFO 2026-06-08 09:03:14 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,059 INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 710202 as yet unmatched pairs. 22574 records in RAM. INFO 2026-06-08 09:03:16 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr7:101,002,875 INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 710829 as yet unmatched pairs. 23201 records in RAM. INFO 2026-06-08 09:03:19 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 3s. Last read position: chr7:102,201,769 INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 706068 as yet unmatched pairs. 18434 records in RAM. INFO 2026-06-08 09:03:21 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr7:105,146,513 INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 704575 as yet unmatched pairs. 16938 records in RAM. INFO 2026-06-08 09:03:23 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr7:107,980,607 INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 703380 as yet unmatched pairs. 15728 records in RAM. INFO 2026-06-08 09:03:25 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr7:116,795,908 INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 703289 as yet unmatched pairs. 15627 records in RAM. INFO 2026-06-08 09:04:39 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 73s. Last read position: chr7:127,707,566 INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 706156 as yet unmatched pairs. 18485 records in RAM. INFO 2026-06-08 09:04:41 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr7:128,986,884 INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 698460 as yet unmatched pairs. 10784 records in RAM. INFO 2026-06-08 09:04:42 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr7:137,913,040 INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 698197 as yet unmatched pairs. 10497 records in RAM. INFO 2026-06-08 09:04:44 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr7:140,781,656 INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 696180 as yet unmatched pairs. 8447 records in RAM. INFO 2026-06-08 09:04:45 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr7:144,276,414 INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 693685 as yet unmatched pairs. 5940 records in RAM. INFO 2026-06-08 09:04:47 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr7:150,372,766 INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 692921 as yet unmatched pairs. 5171 records in RAM. INFO 2026-06-08 09:04:49 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr7:151,557,204 INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 689529 as yet unmatched pairs. 1767 records in RAM. INFO 2026-06-08 09:04:51 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr8:1,771,114 INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 687892 as yet unmatched pairs. 55115 records in RAM. INFO 2026-06-08 09:04:52 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr8:13,088,530 INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 686065 as yet unmatched pairs. 53273 records in RAM. INFO 2026-06-08 09:04:54 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr8:22,162,636 INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 706981 as yet unmatched pairs. 74176 records in RAM. INFO 2026-06-08 09:04:56 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr8:22,416,264 INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 682481 as yet unmatched pairs. 49659 records in RAM. INFO 2026-06-08 09:04:57 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr8:26,864,772 INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 680221 as yet unmatched pairs. 47388 records in RAM. INFO 2026-06-08 09:04:59 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr8:37,874,583 INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 678430 as yet unmatched pairs. 45584 records in RAM. INFO 2026-06-08 09:05:01 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr8:38,413,624 INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 678050 as yet unmatched pairs. 45204 records in RAM. INFO 2026-06-08 09:05:03 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 2s. Last read position: chr8:38,978,006 INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 675153 as yet unmatched pairs. 42291 records in RAM. INFO 2026-06-08 09:05:06 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 2s. Last read position: chr8:43,069,572 INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 674887 as yet unmatched pairs. 42010 records in RAM. INFO 2026-06-08 09:05:07 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr8:52,661,181 INFO 2026-06-08 09:05:07 MarkDuplicates Tracking 671912 as yet unmatched pairs. 39032 records in RAM. INFO 2026-06-08 09:05:09 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr8:61,203,307 INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 670058 as yet unmatched pairs. 37166 records in RAM. INFO 2026-06-08 09:05:11 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr8:70,156,707 INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 668924 as yet unmatched pairs. 36020 records in RAM. INFO 2026-06-08 09:05:13 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:81,479,484 INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 667320 as yet unmatched pairs. 34409 records in RAM. INFO 2026-06-08 09:05:15 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr8:94,671,611 INFO 2026-06-08 09:05:15 MarkDuplicates Tracking 666136 as yet unmatched pairs. 33216 records in RAM. INFO 2026-06-08 09:05:16 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,311 INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 672646 as yet unmatched pairs. 39717 records in RAM. INFO 2026-06-08 09:05:18 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr8:100,718,237 INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 672146 as yet unmatched pairs. 39214 records in RAM. INFO 2026-06-08 09:05:20 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr8:103,407,707 INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 660657 as yet unmatched pairs. 27703 records in RAM. INFO 2026-06-08 09:05:22 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr8:119,593,849 INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 659080 as yet unmatched pairs. 26111 records in RAM. INFO 2026-06-08 09:05:24 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr8:127,736,517 INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 665395 as yet unmatched pairs. 32409 records in RAM. INFO 2026-06-08 09:05:25 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr8:133,238,832 INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 656573 as yet unmatched pairs. 23569 records in RAM. INFO 2026-06-08 09:05:27 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 2s. Last read position: chr8:143,250,277 INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 653148 as yet unmatched pairs. 20125 records in RAM. INFO 2026-06-08 09:05:29 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,792,228 INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 651849 as yet unmatched pairs. 18819 records in RAM. INFO 2026-06-08 09:05:31 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,420 INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 649666 as yet unmatched pairs. 16634 records in RAM. INFO 2026-06-08 09:05:32 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,471 INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 651166 as yet unmatched pairs. 18130 records in RAM. INFO 2026-06-08 09:05:33 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,591 INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 653695 as yet unmatched pairs. 20659 records in RAM. INFO 2026-06-08 09:05:35 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,439 INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 648883 as yet unmatched pairs. 15847 records in RAM. INFO 2026-06-08 09:05:36 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,213 INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 649588 as yet unmatched pairs. 16552 records in RAM. INFO 2026-06-08 09:05:38 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,094 INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 652669 as yet unmatched pairs. 19633 records in RAM. INFO 2026-06-08 09:05:39 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,938 INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 644920 as yet unmatched pairs. 11884 records in RAM. INFO 2026-06-08 09:05:40 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,962 INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 646600 as yet unmatched pairs. 13564 records in RAM. INFO 2026-06-08 09:05:41 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,033 INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 643839 as yet unmatched pairs. 10794 records in RAM. INFO 2026-06-08 09:05:43 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr8:143,869,373 INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 645853 as yet unmatched pairs. 12799 records in RAM. INFO 2026-06-08 09:05:44 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,258 INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 644416 as yet unmatched pairs. 11354 records in RAM. INFO 2026-06-08 09:05:46 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr8:144,054,569 INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 638258 as yet unmatched pairs. 5187 records in RAM. INFO 2026-06-08 09:05:49 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr8:144,360,245 INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 637200 as yet unmatched pairs. 4112 records in RAM. INFO 2026-06-08 09:05:52 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 3s. Last read position: chr8:144,791,362 INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 635963 as yet unmatched pairs. 2844 records in RAM. INFO 2026-06-08 09:05:54 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr9:6,013,479 INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 631934 as yet unmatched pairs. 41548 records in RAM. INFO 2026-06-08 09:05:56 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr9:19,350,851 INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 630629 as yet unmatched pairs. 40180 records in RAM. INFO 2026-06-08 09:05:58 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr9:33,442,000 INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 629261 as yet unmatched pairs. 38800 records in RAM. INFO 2026-06-08 09:06:00 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr9:35,403,943 INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 626768 as yet unmatched pairs. 36307 records in RAM. INFO 2026-06-08 09:06:01 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr9:37,356,857 INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 624733 as yet unmatched pairs. 34238 records in RAM. INFO 2026-06-08 09:06:03 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr9:71,732,410 INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 623641 as yet unmatched pairs. 33142 records in RAM. INFO 2026-06-08 09:06:05 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr9:83,975,486 INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 624199 as yet unmatched pairs. 33681 records in RAM. INFO 2026-06-08 09:06:07 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr9:92,314,652 INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 620164 as yet unmatched pairs. 29637 records in RAM. INFO 2026-06-08 09:06:09 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr9:96,417,751 INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 618086 as yet unmatched pairs. 27545 records in RAM. INFO 2026-06-08 09:06:10 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr9:104,809,471 INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 616663 as yet unmatched pairs. 26102 records in RAM. INFO 2026-06-08 09:06:12 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr9:110,972,213 INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 614523 as yet unmatched pairs. 23945 records in RAM. INFO 2026-06-08 09:06:14 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr9:114,358,010 INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 613028 as yet unmatched pairs. 22438 records in RAM. INFO 2026-06-08 09:06:16 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr9:121,329,274 INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 611923 as yet unmatched pairs. 21321 records in RAM. INFO 2026-06-08 09:06:18 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 2s. Last read position: chr9:125,238,976 INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 609880 as yet unmatched pairs. 19274 records in RAM. INFO 2026-06-08 09:06:21 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr9:127,817,147 INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 607384 as yet unmatched pairs. 16771 records in RAM. INFO 2026-06-08 09:06:22 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr9:128,580,941 INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 606905 as yet unmatched pairs. 16265 records in RAM. INFO 2026-06-08 09:06:24 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr9:129,634,279 INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 603863 as yet unmatched pairs. 13205 records in RAM. INFO 2026-06-08 09:06:26 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr9:131,459,184 INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 602463 as yet unmatched pairs. 11793 records in RAM. INFO 2026-06-08 09:06:28 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr9:133,255,097 INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 599942 as yet unmatched pairs. 9257 records in RAM. INFO 2026-06-08 09:06:30 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr9:134,798,408 INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 598575 as yet unmatched pairs. 7878 records in RAM. INFO 2026-06-08 09:06:31 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr9:136,504,897 INFO 2026-06-08 09:06:31 MarkDuplicates Tracking 596267 as yet unmatched pairs. 5562 records in RAM. INFO 2026-06-08 09:06:33 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr9:137,016,132 INFO 2026-06-08 09:06:33 MarkDuplicates Tracking 593829 as yet unmatched pairs. 3115 records in RAM. INFO 2026-06-08 09:06:35 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr9:137,564,498 INFO 2026-06-08 09:06:35 MarkDuplicates Tracking 591303 as yet unmatched pairs. 575 records in RAM. INFO 2026-06-08 09:06:37 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 2s. Last read position: chr10:5,730,760 INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 589633 as yet unmatched pairs. 33484 records in RAM. INFO 2026-06-08 09:06:39 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr10:15,214,495 INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 587779 as yet unmatched pairs. 31622 records in RAM. INFO 2026-06-08 09:06:41 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr10:24,670,295 INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 586107 as yet unmatched pairs. 29940 records in RAM. INFO 2026-06-08 09:06:43 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr10:32,022,148 INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 587824 as yet unmatched pairs. 31642 records in RAM. INFO 2026-06-08 09:06:45 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr10:37,953,101 INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 583135 as yet unmatched pairs. 26950 records in RAM. INFO 2026-06-08 09:06:47 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr10:46,109,733 INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 581624 as yet unmatched pairs. 25426 records in RAM. INFO 2026-06-08 09:06:49 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr10:59,812,759 INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 582238 as yet unmatched pairs. 26022 records in RAM. INFO 2026-06-08 09:06:51 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr10:69,380,075 INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 579211 as yet unmatched pairs. 22971 records in RAM. INFO 2026-06-08 09:06:53 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr10:73,396,519 INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 577596 as yet unmatched pairs. 21345 records in RAM. INFO 2026-06-08 09:06:55 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr10:77,854,230 INFO 2026-06-08 09:06:55 MarkDuplicates Tracking 575167 as yet unmatched pairs. 18899 records in RAM. INFO 2026-06-08 09:06:57 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr10:79,559,419 INFO 2026-06-08 09:06:57 MarkDuplicates Tracking 576697 as yet unmatched pairs. 20419 records in RAM. INFO 2026-06-08 09:06:58 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr10:84,150,105 INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 572962 as yet unmatched pairs. 16684 records in RAM. INFO 2026-06-08 09:07:00 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr10:89,402,467 INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 570403 as yet unmatched pairs. 14112 records in RAM. INFO 2026-06-08 09:07:02 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr10:95,874,555 INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 568602 as yet unmatched pairs. 12294 records in RAM. INFO 2026-06-08 09:07:04 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr10:99,956,682 INFO 2026-06-08 09:07:04 MarkDuplicates Tracking 566768 as yet unmatched pairs. 10451 records in RAM. INFO 2026-06-08 09:07:06 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr10:102,157,373 INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 565460 as yet unmatched pairs. 9127 records in RAM. INFO 2026-06-08 09:07:08 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr10:104,070,520 INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 564377 as yet unmatched pairs. 8037 records in RAM. INFO 2026-06-08 09:07:10 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr10:116,886,347 INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 561898 as yet unmatched pairs. 5550 records in RAM. INFO 2026-06-08 09:07:11 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr10:121,910,927 INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 559959 as yet unmatched pairs. 3605 records in RAM. INFO 2026-06-08 09:07:13 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr10:125,827,585 INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 558364 as yet unmatched pairs. 2003 records in RAM. INFO 2026-06-08 09:07:15 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr11:209,449 INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 557100 as yet unmatched pairs. 71239 records in RAM. INFO 2026-06-08 09:07:19 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 3s. Last read position: chr11:319,857 INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 561998 as yet unmatched pairs. 76134 records in RAM. INFO 2026-06-08 09:07:20 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:611,008 INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 552523 as yet unmatched pairs. 66634 records in RAM. INFO 2026-06-08 09:07:22 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr11:1,078,342 INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 552728 as yet unmatched pairs. 66827 records in RAM. INFO 2026-06-08 09:07:24 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,270 INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 549639 as yet unmatched pairs. 63733 records in RAM. INFO 2026-06-08 09:07:26 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:2,377,562 INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 549485 as yet unmatched pairs. 63573 records in RAM. INFO 2026-06-08 09:07:28 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr11:6,457,009 INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 545223 as yet unmatched pairs. 59304 records in RAM. INFO 2026-06-08 09:07:29 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:9,403,363 INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 543931 as yet unmatched pairs. 57999 records in RAM. INFO 2026-06-08 09:07:31 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr11:12,226,199 INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 542185 as yet unmatched pairs. 56241 records in RAM. INFO 2026-06-08 09:07:33 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr11:18,279,772 INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 539920 as yet unmatched pairs. 53961 records in RAM. INFO 2026-06-08 09:07:35 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:33,286,417 INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 538721 as yet unmatched pairs. 52757 records in RAM. INFO 2026-06-08 09:07:37 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr11:43,405,597 INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 536646 as yet unmatched pairs. 50672 records in RAM. INFO 2026-06-08 09:07:38 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr11:46,777,500 INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 534753 as yet unmatched pairs. 48753 records in RAM. INFO 2026-06-08 09:07:40 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:47,812,079 INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 532821 as yet unmatched pairs. 46816 records in RAM. INFO 2026-06-08 09:07:42 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr11:57,803,676 INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 532057 as yet unmatched pairs. 46048 records in RAM. INFO 2026-06-08 09:07:45 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 2s. Last read position: chr11:61,311,885 INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 529700 as yet unmatched pairs. 43687 records in RAM. INFO 2026-06-08 09:07:47 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr11:61,967,323 INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 530684 as yet unmatched pairs. 44665 records in RAM. INFO 2026-06-08 09:07:48 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr11:62,525,576 INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 527760 as yet unmatched pairs. 41739 records in RAM. INFO 2026-06-08 09:07:50 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr11:62,560,286 INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 526579 as yet unmatched pairs. 40558 records in RAM. INFO 2026-06-08 09:07:52 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr11:62,827,385 INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 523041 as yet unmatched pairs. 37015 records in RAM. INFO 2026-06-08 09:07:54 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr11:64,258,689 INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 521083 as yet unmatched pairs. 35054 records in RAM. INFO 2026-06-08 09:07:56 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr11:64,906,510 INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 518800 as yet unmatched pairs. 32766 records in RAM. INFO 2026-06-08 09:07:58 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr11:65,539,741 INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 516549 as yet unmatched pairs. 30454 records in RAM. INFO 2026-06-08 09:07:59 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr11:65,778,916 INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 514497 as yet unmatched pairs. 28398 records in RAM. INFO 2026-06-08 09:08:01 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr11:66,526,737 INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 512308 as yet unmatched pairs. 26206 records in RAM. INFO 2026-06-08 09:08:03 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr11:67,440,191 INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 510218 as yet unmatched pairs. 24095 records in RAM. INFO 2026-06-08 09:08:06 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr11:68,413,948 INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 508197 as yet unmatched pairs. 22071 records in RAM. INFO 2026-06-08 09:08:08 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr11:70,435,066 INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 506713 as yet unmatched pairs. 20580 records in RAM. INFO 2026-06-08 09:08:09 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr11:72,754,983 INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 504462 as yet unmatched pairs. 18319 records in RAM. INFO 2026-06-08 09:08:11 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr11:75,404,684 INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 504559 as yet unmatched pairs. 18402 records in RAM. INFO 2026-06-08 09:08:13 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr11:83,171,838 INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 500378 as yet unmatched pairs. 14216 records in RAM. INFO 2026-06-08 09:08:15 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr11:95,979,258 INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 498839 as yet unmatched pairs. 12655 records in RAM. INFO 2026-06-08 09:08:17 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 2s. Last read position: chr11:105,044,436 INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 496973 as yet unmatched pairs. 10787 records in RAM. INFO 2026-06-08 09:08:19 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr11:116,847,553 INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 495242 as yet unmatched pairs. 9041 records in RAM. INFO 2026-06-08 09:08:20 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr11:118,506,263 INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 493759 as yet unmatched pairs. 7544 records in RAM. INFO 2026-06-08 09:08:22 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr11:119,335,947 INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 491936 as yet unmatched pairs. 5716 records in RAM. INFO 2026-06-08 09:08:24 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,653 INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 494956 as yet unmatched pairs. 8719 records in RAM. INFO 2026-06-08 09:08:26 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr11:128,968,942 INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 488742 as yet unmatched pairs. 2498 records in RAM. INFO 2026-06-08 09:08:28 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr11:134,344,970 INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 486573 as yet unmatched pairs. 319 records in RAM. INFO 2026-06-08 09:08:31 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 3s. Last read position: chr12:4,288,909 INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 485549 as yet unmatched pairs. 58892 records in RAM. INFO 2026-06-08 09:08:33 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:6,457,429 INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 483011 as yet unmatched pairs. 56345 records in RAM. INFO 2026-06-08 09:08:35 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr12:6,869,316 INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 481894 as yet unmatched pairs. 55222 records in RAM. INFO 2026-06-08 09:08:37 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr12:7,487,782 INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 480178 as yet unmatched pairs. 53502 records in RAM. INFO 2026-06-08 09:08:39 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr12:9,115,791 INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 477831 as yet unmatched pairs. 51153 records in RAM. INFO 2026-06-08 09:08:40 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr12:13,213,688 INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 478207 as yet unmatched pairs. 51522 records in RAM. INFO 2026-06-08 09:08:42 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr12:21,818,227 INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 474445 as yet unmatched pairs. 47744 records in RAM. INFO 2026-06-08 09:08:44 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr12:32,740,175 INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 473038 as yet unmatched pairs. 46325 records in RAM. INFO 2026-06-08 09:08:46 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr12:47,789,339 INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 472001 as yet unmatched pairs. 45277 records in RAM. INFO 2026-06-08 09:08:48 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr12:49,050,028 INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 469714 as yet unmatched pairs. 42984 records in RAM. INFO 2026-06-08 09:08:50 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr12:49,643,267 INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 467886 as yet unmatched pairs. 41150 records in RAM. INFO 2026-06-08 09:08:52 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr12:51,912,474 INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 466896 as yet unmatched pairs. 40152 records in RAM. INFO 2026-06-08 09:08:53 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr12:52,952,764 INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 464139 as yet unmatched pairs. 37395 records in RAM. INFO 2026-06-08 09:08:55 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr12:53,462,504 INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 467281 as yet unmatched pairs. 40533 records in RAM. INFO 2026-06-08 09:08:57 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr12:54,402,288 INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 461412 as yet unmatched pairs. 34658 records in RAM. INFO 2026-06-08 09:08:59 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr12:56,104,777 INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 459452 as yet unmatched pairs. 32690 records in RAM. INFO 2026-06-08 09:09:02 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr12:56,430,933 INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 457785 as yet unmatched pairs. 31020 records in RAM. INFO 2026-06-08 09:09:04 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 2s. Last read position: chr12:57,030,260 INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 456317 as yet unmatched pairs. 29543 records in RAM. INFO 2026-06-08 09:09:06 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr12:57,138,546 INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 456465 as yet unmatched pairs. 29680 records in RAM. INFO 2026-06-08 09:09:08 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr12:57,211,787 INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 453218 as yet unmatched pairs. 26433 records in RAM. INFO 2026-06-08 09:09:10 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr12:57,829,468 INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 452018 as yet unmatched pairs. 25229 records in RAM. INFO 2026-06-08 09:09:12 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr12:68,824,632 INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 449231 as yet unmatched pairs. 22434 records in RAM. INFO 2026-06-08 09:09:13 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr12:76,067,371 INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 451411 as yet unmatched pairs. 24609 records in RAM. INFO 2026-06-08 09:09:15 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr12:93,640,837 INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 445854 as yet unmatched pairs. 19037 records in RAM. INFO 2026-06-08 09:09:17 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr12:101,395,636 INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 444988 as yet unmatched pairs. 18152 records in RAM. INFO 2026-06-08 09:09:19 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 2s. Last read position: chr12:106,340,994 INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 442567 as yet unmatched pairs. 15726 records in RAM. INFO 2026-06-08 09:09:21 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr12:110,377,528 INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 440969 as yet unmatched pairs. 14125 records in RAM. INFO 2026-06-08 09:09:23 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr12:112,406,004 INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 441907 as yet unmatched pairs. 15053 records in RAM. INFO 2026-06-08 09:09:24 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr12:117,046,815 INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 437141 as yet unmatched pairs. 10287 records in RAM. INFO 2026-06-08 09:09:26 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr12:120,219,982 INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 436066 as yet unmatched pairs. 9202 records in RAM. INFO 2026-06-08 09:09:28 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr12:122,132,361 INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 434474 as yet unmatched pairs. 7607 records in RAM. INFO 2026-06-08 09:09:30 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr12:123,756,876 INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 431665 as yet unmatched pairs. 4796 records in RAM. INFO 2026-06-08 09:09:32 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr12:130,875,628 INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 431012 as yet unmatched pairs. 4138 records in RAM. INFO 2026-06-08 09:09:34 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr12:132,789,111 INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 427452 as yet unmatched pairs. 575 records in RAM. INFO 2026-06-08 09:09:36 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr13:20,189,272 INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 425881 as yet unmatched pairs. 22950 records in RAM. INFO 2026-06-08 09:09:38 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 2s. Last read position: chr13:25,097,165 INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 424327 as yet unmatched pairs. 21385 records in RAM. INFO 2026-06-08 09:09:40 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr13:27,968,663 INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 426245 as yet unmatched pairs. 23281 records in RAM. INFO 2026-06-08 09:09:42 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr13:32,538,621 INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 420922 as yet unmatched pairs. 17943 records in RAM. INFO 2026-06-08 09:09:44 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr13:42,129,585 INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 419520 as yet unmatched pairs. 16537 records in RAM. INFO 2026-06-08 09:09:46 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 2s. Last read position: chr13:45,340,116 INFO 2026-06-08 09:09:46 MarkDuplicates Tracking 428445 as yet unmatched pairs. 25459 records in RAM. INFO 2026-06-08 09:09:48 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr13:48,459,729 INFO 2026-06-08 09:09:48 MarkDuplicates Tracking 415793 as yet unmatched pairs. 12798 records in RAM. INFO 2026-06-08 09:09:49 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr13:71,865,922 INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 414442 as yet unmatched pairs. 11420 records in RAM. INFO 2026-06-08 09:09:51 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr13:77,243,085 INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 412396 as yet unmatched pairs. 9366 records in RAM. INFO 2026-06-08 09:09:53 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr13:98,453,191 INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 411439 as yet unmatched pairs. 8401 records in RAM. INFO 2026-06-08 09:09:55 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr13:102,862,153 INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 409227 as yet unmatched pairs. 6188 records in RAM. INFO 2026-06-08 09:09:57 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr13:110,428,557 INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 407431 as yet unmatched pairs. 4388 records in RAM. INFO 2026-06-08 09:09:59 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr13:113,096,466 INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 405570 as yet unmatched pairs. 2524 records in RAM. INFO 2026-06-08 09:10:01 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 2s. Last read position: chr14:20,383,227 INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 402957 as yet unmatched pairs. 36433 records in RAM. INFO 2026-06-08 09:10:03 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr14:22,575,222 INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 402311 as yet unmatched pairs. 35776 records in RAM. INFO 2026-06-08 09:10:05 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr14:23,275,909 INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 399366 as yet unmatched pairs. 32831 records in RAM. INFO 2026-06-08 09:10:08 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 2s. Last read position: chr14:24,218,058 INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 397305 as yet unmatched pairs. 30770 records in RAM. INFO 2026-06-08 09:10:10 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr14:32,092,867 INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 396286 as yet unmatched pairs. 29746 records in RAM. INFO 2026-06-08 09:10:12 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr14:49,583,590 INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 398921 as yet unmatched pairs. 32366 records in RAM. INFO 2026-06-08 09:10:14 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr14:52,671,666 INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 394229 as yet unmatched pairs. 27623 records in RAM. INFO 2026-06-08 09:10:16 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr14:57,390,698 INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 390291 as yet unmatched pairs. 23684 records in RAM. INFO 2026-06-08 09:10:18 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr14:64,427,414 INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 388924 as yet unmatched pairs. 22299 records in RAM. INFO 2026-06-08 09:10:20 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr14:68,874,993 INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 387905 as yet unmatched pairs. 21267 records in RAM. INFO 2026-06-08 09:10:22 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr14:73,259,419 INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 385055 as yet unmatched pairs. 18407 records in RAM. INFO 2026-06-08 09:10:23 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr14:74,763,963 INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 382997 as yet unmatched pairs. 16348 records in RAM. INFO 2026-06-08 09:10:25 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr14:80,785,373 INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 381140 as yet unmatched pairs. 14489 records in RAM. INFO 2026-06-08 09:10:27 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr14:92,717,379 INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 380831 as yet unmatched pairs. 14176 records in RAM. INFO 2026-06-08 09:10:29 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr14:99,257,765 INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 378007 as yet unmatched pairs. 11345 records in RAM. INFO 2026-06-08 09:10:31 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr14:102,029,634 INFO 2026-06-08 09:10:31 MarkDuplicates Tracking 376056 as yet unmatched pairs. 9378 records in RAM. INFO 2026-06-08 09:10:32 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr14:103,480,448 INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 374434 as yet unmatched pairs. 7746 records in RAM. INFO 2026-06-08 09:10:34 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 2s. Last read position: chr14:104,887,920 INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 372182 as yet unmatched pairs. 5474 records in RAM. INFO 2026-06-08 09:10:36 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr14:104,952,979 INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 371696 as yet unmatched pairs. 4982 records in RAM. INFO 2026-06-08 09:10:38 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,335 INFO 2026-06-08 09:10:38 MarkDuplicates Tracking 379256 as yet unmatched pairs. 12536 records in RAM. INFO 2026-06-08 09:10:41 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 2s. Last read position: chr15:20,435,849 INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 366851 as yet unmatched pairs. 33973 records in RAM. INFO 2026-06-08 09:10:42 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr15:28,673,905 INFO 2026-06-08 09:10:42 MarkDuplicates Tracking 365736 as yet unmatched pairs. 32852 records in RAM. INFO 2026-06-08 09:10:44 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr15:34,528,648 INFO 2026-06-08 09:10:44 MarkDuplicates Tracking 364100 as yet unmatched pairs. 31208 records in RAM. INFO 2026-06-08 09:10:45 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr15:40,459,778 INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 362348 as yet unmatched pairs. 29451 records in RAM. INFO 2026-06-08 09:10:47 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr15:41,836,485 INFO 2026-06-08 09:10:47 MarkDuplicates Tracking 360385 as yet unmatched pairs. 27487 records in RAM. INFO 2026-06-08 09:10:49 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr15:43,596,428 INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 359502 as yet unmatched pairs. 26602 records in RAM. INFO 2026-06-08 09:10:50 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr15:44,711,603 INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 363411 as yet unmatched pairs. 30507 records in RAM. INFO 2026-06-08 09:10:52 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr15:50,278,729 INFO 2026-06-08 09:10:52 MarkDuplicates Tracking 355555 as yet unmatched pairs. 22646 records in RAM. INFO 2026-06-08 09:10:54 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr15:57,197,785 INFO 2026-06-08 09:10:54 MarkDuplicates Tracking 356126 as yet unmatched pairs. 23208 records in RAM. INFO 2026-06-08 09:10:55 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr15:60,455,052 INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 352529 as yet unmatched pairs. 19608 records in RAM. INFO 2026-06-08 09:10:57 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr15:64,126,102 INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 350807 as yet unmatched pairs. 17885 records in RAM. INFO 2026-06-08 09:10:59 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr15:66,501,377 INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 349261 as yet unmatched pairs. 16327 records in RAM. INFO 2026-06-08 09:11:01 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr15:72,027,746 INFO 2026-06-08 09:11:01 MarkDuplicates Tracking 347102 as yet unmatched pairs. 14162 records in RAM. INFO 2026-06-08 09:11:02 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr15:74,033,171 INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 346913 as yet unmatched pairs. 13973 records in RAM. INFO 2026-06-08 09:11:04 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr15:75,367,540 INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 343460 as yet unmatched pairs. 10518 records in RAM. INFO 2026-06-08 09:11:05 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr15:78,894,150 INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 342563 as yet unmatched pairs. 9610 records in RAM. INFO 2026-06-08 09:11:09 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 3s. Last read position: chr15:84,643,455 INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 340016 as yet unmatched pairs. 7040 records in RAM. INFO 2026-06-08 09:11:10 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr15:89,116,376 INFO 2026-06-08 09:11:10 MarkDuplicates Tracking 340821 as yet unmatched pairs. 7843 records in RAM. INFO 2026-06-08 09:11:13 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 2s. Last read position: chr15:90,440,538 INFO 2026-06-08 09:11:13 MarkDuplicates Tracking 337162 as yet unmatched pairs. 4177 records in RAM. INFO 2026-06-08 09:11:15 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 2s. Last read position: chr15:94,358,553 INFO 2026-06-08 09:11:15 MarkDuplicates Tracking 334859 as yet unmatched pairs. 1872 records in RAM. INFO 2026-06-08 09:11:18 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 2s. Last read position: chr16:298,133 INFO 2026-06-08 09:11:18 MarkDuplicates Tracking 332715 as yet unmatched pairs. 53662 records in RAM. INFO 2026-06-08 09:11:20 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr16:1,362,115 INFO 2026-06-08 09:11:20 MarkDuplicates Tracking 330673 as yet unmatched pairs. 51613 records in RAM. INFO 2026-06-08 09:11:21 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr16:2,116,857 INFO 2026-06-08 09:11:21 MarkDuplicates Tracking 328177 as yet unmatched pairs. 49114 records in RAM. INFO 2026-06-08 09:11:23 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr16:2,765,095 INFO 2026-06-08 09:11:23 MarkDuplicates Tracking 326552 as yet unmatched pairs. 47478 records in RAM. INFO 2026-06-08 09:11:25 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr16:3,728,867 INFO 2026-06-08 09:11:25 MarkDuplicates Tracking 324583 as yet unmatched pairs. 45509 records in RAM. INFO 2026-06-08 09:11:26 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr16:10,915,601 INFO 2026-06-08 09:11:26 MarkDuplicates Tracking 322375 as yet unmatched pairs. 43297 records in RAM. INFO 2026-06-08 09:11:28 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr16:14,853,519 INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 320871 as yet unmatched pairs. 41792 records in RAM. INFO 2026-06-08 09:11:29 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr16:15,363,690 INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 319573 as yet unmatched pairs. 40490 records in RAM. INFO 2026-06-08 09:11:30 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr16:16,324,881 INFO 2026-06-08 09:11:30 MarkDuplicates Tracking 318805 as yet unmatched pairs. 39721 records in RAM. INFO 2026-06-08 09:11:32 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr16:18,359,616 INFO 2026-06-08 09:11:32 MarkDuplicates Tracking 318394 as yet unmatched pairs. 39309 records in RAM. INFO 2026-06-08 09:11:33 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr16:18,815,620 INFO 2026-06-08 09:11:33 MarkDuplicates Tracking 317343 as yet unmatched pairs. 38252 records in RAM. INFO 2026-06-08 09:11:34 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,057 INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 315225 as yet unmatched pairs. 36132 records in RAM. INFO 2026-06-08 09:11:36 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr16:21,915,809 INFO 2026-06-08 09:11:36 MarkDuplicates Tracking 314656 as yet unmatched pairs. 35555 records in RAM. INFO 2026-06-08 09:11:38 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr16:23,417,048 INFO 2026-06-08 09:11:38 MarkDuplicates Tracking 313859 as yet unmatched pairs. 34758 records in RAM. INFO 2026-06-08 09:11:39 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr16:28,388,144 INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 313384 as yet unmatched pairs. 34281 records in RAM. INFO 2026-06-08 09:11:41 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr16:28,911,140 INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 310744 as yet unmatched pairs. 31631 records in RAM. INFO 2026-06-08 09:11:43 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 2s. Last read position: chr16:29,807,382 INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 310573 as yet unmatched pairs. 31457 records in RAM. INFO 2026-06-08 09:11:46 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 3s. Last read position: chr16:30,069,555 INFO 2026-06-08 09:11:46 MarkDuplicates Tracking 311356 as yet unmatched pairs. 32232 records in RAM. INFO 2026-06-08 09:11:52 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 5s. Last read position: chr16:30,397,767 INFO 2026-06-08 09:11:52 MarkDuplicates Tracking 306559 as yet unmatched pairs. 27430 records in RAM. INFO 2026-06-08 09:11:53 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 1s. Last read position: chr16:31,034,064 INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 304294 as yet unmatched pairs. 25156 records in RAM. INFO 2026-06-08 09:11:55 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 2s. Last read position: chr16:31,371,164 INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 302706 as yet unmatched pairs. 23556 records in RAM. INFO 2026-06-08 09:11:57 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 2s. Last read position: chr16:52,655,752 INFO 2026-06-08 09:11:57 MarkDuplicates Tracking 300480 as yet unmatched pairs. 21316 records in RAM. INFO 2026-06-08 09:12:00 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 2s. Last read position: chr16:57,067,789 INFO 2026-06-08 09:12:00 MarkDuplicates Tracking 299544 as yet unmatched pairs. 20376 records in RAM. INFO 2026-06-08 09:12:02 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr16:58,667,262 INFO 2026-06-08 09:12:02 MarkDuplicates Tracking 296911 as yet unmatched pairs. 17740 records in RAM. INFO 2026-06-08 09:12:04 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr16:67,438,991 INFO 2026-06-08 09:12:04 MarkDuplicates Tracking 295109 as yet unmatched pairs. 15936 records in RAM. INFO 2026-06-08 09:12:05 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr16:68,810,304 INFO 2026-06-08 09:12:05 MarkDuplicates Tracking 293285 as yet unmatched pairs. 14087 records in RAM. INFO 2026-06-08 09:12:07 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 1s. Last read position: chr16:70,258,149 INFO 2026-06-08 09:12:07 MarkDuplicates Tracking 291056 as yet unmatched pairs. 11850 records in RAM. INFO 2026-06-08 09:12:09 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr16:72,797,488 INFO 2026-06-08 09:12:09 MarkDuplicates Tracking 289360 as yet unmatched pairs. 10143 records in RAM. INFO 2026-06-08 09:12:10 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr16:81,445,255 INFO 2026-06-08 09:12:10 MarkDuplicates Tracking 287715 as yet unmatched pairs. 8481 records in RAM. INFO 2026-06-08 09:12:12 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr16:85,969,116 INFO 2026-06-08 09:12:12 MarkDuplicates Tracking 285132 as yet unmatched pairs. 5875 records in RAM. INFO 2026-06-08 09:12:14 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr16:88,721,275 INFO 2026-06-08 09:12:14 MarkDuplicates Tracking 283600 as yet unmatched pairs. 4342 records in RAM. INFO 2026-06-08 09:12:15 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr16:89,561,647 INFO 2026-06-08 09:12:15 MarkDuplicates Tracking 289127 as yet unmatched pairs. 9866 records in RAM. INFO 2026-06-08 09:12:18 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 2s. Last read position: chr17:1,091,701 INFO 2026-06-08 09:12:18 MarkDuplicates Tracking 279294 as yet unmatched pairs. 79998 records in RAM. INFO 2026-06-08 09:12:19 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr17:1,727,732 INFO 2026-06-08 09:12:19 MarkDuplicates Tracking 276954 as yet unmatched pairs. 77658 records in RAM. INFO 2026-06-08 09:12:21 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr17:4,672,566 INFO 2026-06-08 09:12:21 MarkDuplicates Tracking 274897 as yet unmatched pairs. 75600 records in RAM. INFO 2026-06-08 09:12:23 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr17:6,644,629 INFO 2026-06-08 09:12:23 MarkDuplicates Tracking 273027 as yet unmatched pairs. 73729 records in RAM. INFO 2026-06-08 09:12:25 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr17:7,500,654 INFO 2026-06-08 09:12:25 MarkDuplicates Tracking 271765 as yet unmatched pairs. 72465 records in RAM. INFO 2026-06-08 09:12:27 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 2s. Last read position: chr17:7,909,184 INFO 2026-06-08 09:12:27 MarkDuplicates Tracking 269474 as yet unmatched pairs. 70157 records in RAM. INFO 2026-06-08 09:12:32 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 4s. Last read position: chr17:16,101,718 INFO 2026-06-08 09:12:32 MarkDuplicates Tracking 267978 as yet unmatched pairs. 68645 records in RAM. INFO 2026-06-08 09:12:34 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:18,249,382 INFO 2026-06-08 09:12:34 MarkDuplicates Tracking 265700 as yet unmatched pairs. 66364 records in RAM. INFO 2026-06-08 09:13:37 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 63s. Last read position: chr17:28,319,323 INFO 2026-06-08 09:13:37 MarkDuplicates Tracking 264130 as yet unmatched pairs. 64794 records in RAM. INFO 2026-06-08 09:14:51 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 74s. Last read position: chr17:29,082,419 INFO 2026-06-08 09:14:51 MarkDuplicates Tracking 262232 as yet unmatched pairs. 62896 records in RAM. INFO 2026-06-08 09:14:53 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr17:31,305,295 INFO 2026-06-08 09:14:53 MarkDuplicates Tracking 260542 as yet unmatched pairs. 61200 records in RAM. INFO 2026-06-08 09:14:54 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr17:35,362,894 INFO 2026-06-08 09:14:54 MarkDuplicates Tracking 258674 as yet unmatched pairs. 59331 records in RAM. INFO 2026-06-08 09:14:56 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr17:36,599,993 INFO 2026-06-08 09:14:56 MarkDuplicates Tracking 257232 as yet unmatched pairs. 57888 records in RAM. INFO 2026-06-08 09:14:58 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr17:38,735,460 INFO 2026-06-08 09:14:58 MarkDuplicates Tracking 255937 as yet unmatched pairs. 56593 records in RAM. INFO 2026-06-08 09:14:59 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr17:39,672,605 INFO 2026-06-08 09:14:59 MarkDuplicates Tracking 253997 as yet unmatched pairs. 54653 records in RAM. INFO 2026-06-08 09:15:01 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,610 INFO 2026-06-08 09:15:01 MarkDuplicates Tracking 255838 as yet unmatched pairs. 56494 records in RAM. INFO 2026-06-08 09:15:03 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr17:40,444,070 INFO 2026-06-08 09:15:03 MarkDuplicates Tracking 250302 as yet unmatched pairs. 50955 records in RAM. INFO 2026-06-08 09:15:04 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr17:41,907,494 INFO 2026-06-08 09:15:04 MarkDuplicates Tracking 248223 as yet unmatched pairs. 48869 records in RAM. INFO 2026-06-08 09:15:06 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr17:42,670,593 INFO 2026-06-08 09:15:06 MarkDuplicates Tracking 245945 as yet unmatched pairs. 46591 records in RAM. INFO 2026-06-08 09:15:08 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr17:43,774,872 INFO 2026-06-08 09:15:08 MarkDuplicates Tracking 244309 as yet unmatched pairs. 44951 records in RAM. INFO 2026-06-08 09:15:09 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr17:44,935,385 INFO 2026-06-08 09:15:09 MarkDuplicates Tracking 241946 as yet unmatched pairs. 42584 records in RAM. INFO 2026-06-08 09:15:11 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr17:46,624,243 INFO 2026-06-08 09:15:11 MarkDuplicates Tracking 241217 as yet unmatched pairs. 41855 records in RAM. INFO 2026-06-08 09:15:12 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr17:48,592,296 INFO 2026-06-08 09:15:12 MarkDuplicates Tracking 238978 as yet unmatched pairs. 39613 records in RAM. INFO 2026-06-08 09:15:14 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,758 INFO 2026-06-08 09:15:14 MarkDuplicates Tracking 238406 as yet unmatched pairs. 39033 records in RAM. INFO 2026-06-08 09:15:17 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,822 INFO 2026-06-08 09:15:17 MarkDuplicates Tracking 237929 as yet unmatched pairs. 38555 records in RAM. INFO 2026-06-08 09:15:19 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,457 INFO 2026-06-08 09:15:19 MarkDuplicates Tracking 239460 as yet unmatched pairs. 40085 records in RAM. INFO 2026-06-08 09:15:21 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 2s. Last read position: chr17:50,392,876 INFO 2026-06-08 09:15:21 MarkDuplicates Tracking 232242 as yet unmatched pairs. 32862 records in RAM. INFO 2026-06-08 09:15:23 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr17:56,949,710 INFO 2026-06-08 09:15:23 MarkDuplicates Tracking 228794 as yet unmatched pairs. 29414 records in RAM. INFO 2026-06-08 09:15:25 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr17:59,644,366 INFO 2026-06-08 09:15:25 MarkDuplicates Tracking 232513 as yet unmatched pairs. 33125 records in RAM. INFO 2026-06-08 09:15:27 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,637 INFO 2026-06-08 09:15:27 MarkDuplicates Tracking 229349 as yet unmatched pairs. 29961 records in RAM. INFO 2026-06-08 09:15:28 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr17:62,426,570 INFO 2026-06-08 09:15:28 MarkDuplicates Tracking 223720 as yet unmatched pairs. 24327 records in RAM. INFO 2026-06-08 09:15:31 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 2s. Last read position: chr17:64,500,637 INFO 2026-06-08 09:15:31 MarkDuplicates Tracking 222525 as yet unmatched pairs. 23131 records in RAM. INFO 2026-06-08 09:15:33 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr17:68,135,224 INFO 2026-06-08 09:15:33 MarkDuplicates Tracking 220135 as yet unmatched pairs. 20734 records in RAM. INFO 2026-06-08 09:15:35 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr17:74,439,943 INFO 2026-06-08 09:15:35 MarkDuplicates Tracking 219382 as yet unmatched pairs. 19980 records in RAM. INFO 2026-06-08 09:15:37 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 2s. Last read position: chr17:75,571,761 INFO 2026-06-08 09:15:37 MarkDuplicates Tracking 217712 as yet unmatched pairs. 18310 records in RAM. INFO 2026-06-08 09:15:39 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr17:75,892,028 INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 214465 as yet unmatched pairs. 15060 records in RAM. INFO 2026-06-08 09:15:40 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr17:76,627,220 INFO 2026-06-08 09:15:40 MarkDuplicates Tracking 212072 as yet unmatched pairs. 12667 records in RAM. INFO 2026-06-08 09:15:42 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr17:78,812,943 INFO 2026-06-08 09:15:42 MarkDuplicates Tracking 210036 as yet unmatched pairs. 10629 records in RAM. INFO 2026-06-08 09:15:44 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr17:80,290,655 INFO 2026-06-08 09:15:44 MarkDuplicates Tracking 208346 as yet unmatched pairs. 8936 records in RAM. INFO 2026-06-08 09:15:45 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr17:81,246,314 INFO 2026-06-08 09:15:45 MarkDuplicates Tracking 206098 as yet unmatched pairs. 6686 records in RAM. INFO 2026-06-08 09:15:47 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr17:81,845,571 INFO 2026-06-08 09:15:47 MarkDuplicates Tracking 206179 as yet unmatched pairs. 6767 records in RAM. INFO 2026-06-08 09:15:48 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr17:82,083,630 INFO 2026-06-08 09:15:48 MarkDuplicates Tracking 202038 as yet unmatched pairs. 2620 records in RAM. INFO 2026-06-08 09:15:50 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr17:82,939,397 INFO 2026-06-08 09:15:50 MarkDuplicates Tracking 199851 as yet unmatched pairs. 432 records in RAM. INFO 2026-06-08 09:15:52 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr18:12,326,076 INFO 2026-06-08 09:15:52 MarkDuplicates Tracking 198014 as yet unmatched pairs. 7379 records in RAM. INFO 2026-06-08 09:15:53 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr18:26,856,413 INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 196776 as yet unmatched pairs. 6139 records in RAM. INFO 2026-06-08 09:15:55 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 2s. Last read position: chr18:47,023,344 INFO 2026-06-08 09:15:55 MarkDuplicates Tracking 194575 as yet unmatched pairs. 3933 records in RAM. INFO 2026-06-08 09:15:57 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr18:58,330,868 INFO 2026-06-08 09:15:57 MarkDuplicates Tracking 193200 as yet unmatched pairs. 2547 records in RAM. INFO 2026-06-08 09:15:59 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 2s. Last read position: chr18:79,715,293 INFO 2026-06-08 09:15:59 MarkDuplicates Tracking 191045 as yet unmatched pairs. 392 records in RAM. INFO 2026-06-08 09:16:03 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 3s. Last read position: chr19:805,172 INFO 2026-06-08 09:16:03 MarkDuplicates Tracking 189015 as yet unmatched pairs. 85218 records in RAM. INFO 2026-06-08 09:16:04 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr19:1,206,910 INFO 2026-06-08 09:16:04 MarkDuplicates Tracking 186561 as yet unmatched pairs. 82764 records in RAM. INFO 2026-06-08 09:16:06 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr19:1,599,493 INFO 2026-06-08 09:16:06 MarkDuplicates Tracking 185740 as yet unmatched pairs. 81943 records in RAM. INFO 2026-06-08 09:16:07 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr19:2,248,378 INFO 2026-06-08 09:16:07 MarkDuplicates Tracking 182163 as yet unmatched pairs. 78363 records in RAM. INFO 2026-06-08 09:16:09 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 2s. Last read position: chr19:3,577,980 INFO 2026-06-08 09:16:09 MarkDuplicates Tracking 179673 as yet unmatched pairs. 75873 records in RAM. INFO 2026-06-08 09:16:11 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr19:4,697,551 INFO 2026-06-08 09:16:11 MarkDuplicates Tracking 177527 as yet unmatched pairs. 73727 records in RAM. INFO 2026-06-08 09:16:12 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr19:5,866,805 INFO 2026-06-08 09:16:12 MarkDuplicates Tracking 175532 as yet unmatched pairs. 71732 records in RAM. INFO 2026-06-08 09:16:14 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr19:6,755,230 INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 173511 as yet unmatched pairs. 69708 records in RAM. INFO 2026-06-08 09:16:16 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr19:8,257,050 INFO 2026-06-08 09:16:16 MarkDuplicates Tracking 171198 as yet unmatched pairs. 67395 records in RAM. INFO 2026-06-08 09:16:18 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr19:10,155,928 INFO 2026-06-08 09:16:18 MarkDuplicates Tracking 169318 as yet unmatched pairs. 65515 records in RAM. INFO 2026-06-08 09:16:20 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr19:10,772,559 INFO 2026-06-08 09:16:20 MarkDuplicates Tracking 168076 as yet unmatched pairs. 64273 records in RAM. INFO 2026-06-08 09:16:22 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr19:11,394,379 INFO 2026-06-08 09:16:22 MarkDuplicates Tracking 165126 as yet unmatched pairs. 61323 records in RAM. INFO 2026-06-08 09:16:24 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 2s. Last read position: chr19:12,792,296 INFO 2026-06-08 09:16:24 MarkDuplicates Tracking 163709 as yet unmatched pairs. 59906 records in RAM. INFO 2026-06-08 09:16:26 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr19:13,919,869 INFO 2026-06-08 09:16:26 MarkDuplicates Tracking 161126 as yet unmatched pairs. 57323 records in RAM. INFO 2026-06-08 09:16:28 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr19:14,566,140 INFO 2026-06-08 09:16:28 MarkDuplicates Tracking 159244 as yet unmatched pairs. 55441 records in RAM. INFO 2026-06-08 09:16:29 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr19:15,267,426 INFO 2026-06-08 09:16:29 MarkDuplicates Tracking 159118 as yet unmatched pairs. 55315 records in RAM. INFO 2026-06-08 09:16:31 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr19:17,192,833 INFO 2026-06-08 09:16:31 MarkDuplicates Tracking 155655 as yet unmatched pairs. 51852 records in RAM. INFO 2026-06-08 09:16:32 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr19:17,863,188 INFO 2026-06-08 09:16:32 MarkDuplicates Tracking 152800 as yet unmatched pairs. 48991 records in RAM. INFO 2026-06-08 09:16:34 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr19:18,768,556 INFO 2026-06-08 09:16:34 MarkDuplicates Tracking 150785 as yet unmatched pairs. 46976 records in RAM. INFO 2026-06-08 09:16:35 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr19:23,827,166 INFO 2026-06-08 09:16:35 MarkDuplicates Tracking 149014 as yet unmatched pairs. 45205 records in RAM. INFO 2026-06-08 09:16:37 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr19:34,399,909 INFO 2026-06-08 09:16:37 MarkDuplicates Tracking 148810 as yet unmatched pairs. 44997 records in RAM. INFO 2026-06-08 09:16:39 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr19:35,546,747 INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 145038 as yet unmatched pairs. 41224 records in RAM. INFO 2026-06-08 09:16:40 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr19:38,119,594 INFO 2026-06-08 09:16:40 MarkDuplicates Tracking 142768 as yet unmatched pairs. 38954 records in RAM. INFO 2026-06-08 09:16:42 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr19:38,802,100 INFO 2026-06-08 09:16:42 MarkDuplicates Tracking 145025 as yet unmatched pairs. 41211 records in RAM. INFO 2026-06-08 09:16:44 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,528 INFO 2026-06-08 09:16:44 MarkDuplicates Tracking 143663 as yet unmatched pairs. 39842 records in RAM. INFO 2026-06-08 09:16:45 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr19:40,374,575 INFO 2026-06-08 09:16:45 MarkDuplicates Tracking 137829 as yet unmatched pairs. 34001 records in RAM. INFO 2026-06-08 09:16:47 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr19:41,306,456 INFO 2026-06-08 09:16:47 MarkDuplicates Tracking 135401 as yet unmatched pairs. 31571 records in RAM. INFO 2026-06-08 09:16:48 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chr19:41,715,710 INFO 2026-06-08 09:16:48 MarkDuplicates Tracking 137599 as yet unmatched pairs. 33769 records in RAM. INFO 2026-06-08 09:16:50 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chr19:41,756,922 INFO 2026-06-08 09:16:50 MarkDuplicates Tracking 134193 as yet unmatched pairs. 30363 records in RAM. INFO 2026-06-08 09:16:51 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr19:42,287,140 INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 131088 as yet unmatched pairs. 27258 records in RAM. INFO 2026-06-08 09:16:53 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr19:43,747,493 INFO 2026-06-08 09:16:53 MarkDuplicates Tracking 127992 as yet unmatched pairs. 24160 records in RAM. INFO 2026-06-08 09:16:54 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chr19:45,382,593 INFO 2026-06-08 09:16:54 MarkDuplicates Tracking 126033 as yet unmatched pairs. 22201 records in RAM. INFO 2026-06-08 09:16:56 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr19:46,691,957 INFO 2026-06-08 09:16:56 MarkDuplicates Tracking 123932 as yet unmatched pairs. 20078 records in RAM. INFO 2026-06-08 09:16:57 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chr19:48,157,024 INFO 2026-06-08 09:16:57 MarkDuplicates Tracking 121854 as yet unmatched pairs. 18000 records in RAM. INFO 2026-06-08 09:16:59 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr19:48,965,785 INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 125062 as yet unmatched pairs. 21208 records in RAM. INFO 2026-06-08 09:17:00 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr19:49,514,270 INFO 2026-06-08 09:17:00 MarkDuplicates Tracking 118441 as yet unmatched pairs. 14587 records in RAM. INFO 2026-06-08 09:17:02 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr19:49,882,197 INFO 2026-06-08 09:17:02 MarkDuplicates Tracking 115612 as yet unmatched pairs. 11758 records in RAM. INFO 2026-06-08 09:17:05 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 2s. Last read position: chr19:50,361,012 INFO 2026-06-08 09:17:05 MarkDuplicates Tracking 116492 as yet unmatched pairs. 12638 records in RAM. INFO 2026-06-08 09:17:06 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chr19:53,352,359 INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 111588 as yet unmatched pairs. 7734 records in RAM. INFO 2026-06-08 09:17:07 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr19:54,458,577 INFO 2026-06-08 09:17:07 MarkDuplicates Tracking 110176 as yet unmatched pairs. 6318 records in RAM. INFO 2026-06-08 09:17:09 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chr19:55,597,824 INFO 2026-06-08 09:17:09 MarkDuplicates Tracking 107271 as yet unmatched pairs. 3411 records in RAM. INFO 2026-06-08 09:17:11 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chr19:58,085,222 INFO 2026-06-08 09:17:11 MarkDuplicates Tracking 105423 as yet unmatched pairs. 1562 records in RAM. INFO 2026-06-08 09:17:12 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 1s. Last read position: chr20:1,372,212 INFO 2026-06-08 09:17:12 MarkDuplicates Tracking 105804 as yet unmatched pairs. 31405 records in RAM. INFO 2026-06-08 09:17:14 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chr20:5,558,036 INFO 2026-06-08 09:17:14 MarkDuplicates Tracking 102136 as yet unmatched pairs. 27737 records in RAM. INFO 2026-06-08 09:17:15 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chr20:20,512,984 INFO 2026-06-08 09:17:15 MarkDuplicates Tracking 99828 as yet unmatched pairs. 25429 records in RAM. INFO 2026-06-08 09:17:17 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: chr20:31,722,048 INFO 2026-06-08 09:17:17 MarkDuplicates Tracking 98792 as yet unmatched pairs. 24391 records in RAM. INFO 2026-06-08 09:17:18 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chr20:34,440,196 INFO 2026-06-08 09:17:18 MarkDuplicates Tracking 95967 as yet unmatched pairs. 21566 records in RAM. INFO 2026-06-08 09:17:20 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chr20:35,631,491 INFO 2026-06-08 09:17:20 MarkDuplicates Tracking 94547 as yet unmatched pairs. 20146 records in RAM. INFO 2026-06-08 09:17:21 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chr20:37,229,983 INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 93060 as yet unmatched pairs. 18659 records in RAM. INFO 2026-06-08 09:17:23 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chr20:43,460,061 INFO 2026-06-08 09:17:23 MarkDuplicates Tracking 90691 as yet unmatched pairs. 16290 records in RAM. INFO 2026-06-08 09:17:24 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chr20:45,409,931 INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 89285 as yet unmatched pairs. 14884 records in RAM. INFO 2026-06-08 09:17:26 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chr20:46,725,229 INFO 2026-06-08 09:17:26 MarkDuplicates Tracking 86538 as yet unmatched pairs. 12133 records in RAM. INFO 2026-06-08 09:17:27 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 1s. Last read position: chr20:50,096,672 INFO 2026-06-08 09:17:27 MarkDuplicates Tracking 85190 as yet unmatched pairs. 10783 records in RAM. INFO 2026-06-08 09:17:29 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 1s. Last read position: chr20:57,561,431 INFO 2026-06-08 09:17:29 MarkDuplicates Tracking 83567 as yet unmatched pairs. 9160 records in RAM. INFO 2026-06-08 09:17:31 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 1s. Last read position: chr20:59,030,392 INFO 2026-06-08 09:17:31 MarkDuplicates Tracking 80888 as yet unmatched pairs. 6481 records in RAM. INFO 2026-06-08 09:17:33 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,020 INFO 2026-06-08 09:17:33 MarkDuplicates Tracking 79373 as yet unmatched pairs. 4965 records in RAM. INFO 2026-06-08 09:17:34 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 1s. Last read position: chr20:63,570,503 INFO 2026-06-08 09:17:34 MarkDuplicates Tracking 76595 as yet unmatched pairs. 2186 records in RAM. INFO 2026-06-08 09:17:36 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chr21:5,146,688 INFO 2026-06-08 09:17:36 MarkDuplicates Tracking 74261 as yet unmatched pairs. 13324 records in RAM. INFO 2026-06-08 09:17:37 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 1s. Last read position: chr21:8,425,848 INFO 2026-06-08 09:17:37 MarkDuplicates Tracking 73468 as yet unmatched pairs. 12527 records in RAM. INFO 2026-06-08 09:17:38 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 1s. Last read position: chr21:26,112,089 INFO 2026-06-08 09:17:38 MarkDuplicates Tracking 75424 as yet unmatched pairs. 14479 records in RAM. INFO 2026-06-08 09:17:40 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chr21:33,552,637 INFO 2026-06-08 09:17:40 MarkDuplicates Tracking 70902 as yet unmatched pairs. 9957 records in RAM. INFO 2026-06-08 09:17:41 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: chr21:37,506,145 INFO 2026-06-08 09:17:41 MarkDuplicates Tracking 69419 as yet unmatched pairs. 8474 records in RAM. INFO 2026-06-08 09:17:43 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 1s. Last read position: chr21:41,489,558 INFO 2026-06-08 09:17:43 MarkDuplicates Tracking 69052 as yet unmatched pairs. 8105 records in RAM. INFO 2026-06-08 09:17:44 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 1s. Last read position: chr21:44,226,923 INFO 2026-06-08 09:17:44 MarkDuplicates Tracking 64835 as yet unmatched pairs. 3887 records in RAM. INFO 2026-06-08 09:17:46 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 1s. Last read position: chr21:46,001,262 INFO 2026-06-08 09:17:46 MarkDuplicates Tracking 62846 as yet unmatched pairs. 1898 records in RAM. INFO 2026-06-08 09:17:47 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 1s. Last read position: chr22:18,538,672 INFO 2026-06-08 09:17:47 MarkDuplicates Tracking 60417 as yet unmatched pairs. 25222 records in RAM. INFO 2026-06-08 09:17:49 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 1s. Last read position: chr22:21,487,585 INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 58450 as yet unmatched pairs. 23255 records in RAM. INFO 2026-06-08 09:17:51 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chr22:23,971,600 INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 56633 as yet unmatched pairs. 21438 records in RAM. INFO 2026-06-08 09:17:52 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 1s. Last read position: chr22:29,272,406 INFO 2026-06-08 09:17:52 MarkDuplicates Tracking 55360 as yet unmatched pairs. 20165 records in RAM. INFO 2026-06-08 09:17:53 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: chr22:30,340,254 INFO 2026-06-08 09:17:53 MarkDuplicates Tracking 52580 as yet unmatched pairs. 17385 records in RAM. INFO 2026-06-08 09:17:55 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 1s. Last read position: chr22:35,323,169 INFO 2026-06-08 09:17:55 MarkDuplicates Tracking 50625 as yet unmatched pairs. 15430 records in RAM. INFO 2026-06-08 09:17:57 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 1s. Last read position: chr22:36,322,459 INFO 2026-06-08 09:17:57 MarkDuplicates Tracking 52010 as yet unmatched pairs. 16815 records in RAM. INFO 2026-06-08 09:17:59 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 1s. Last read position: chr22:37,870,239 INFO 2026-06-08 09:17:59 MarkDuplicates Tracking 46549 as yet unmatched pairs. 11354 records in RAM. INFO 2026-06-08 09:18:00 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 1s. Last read position: chr22:39,513,554 INFO 2026-06-08 09:18:00 MarkDuplicates Tracking 44650 as yet unmatched pairs. 9455 records in RAM. INFO 2026-06-08 09:18:02 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 1s. Last read position: chr22:41,517,614 INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 42630 as yet unmatched pairs. 7435 records in RAM. INFO 2026-06-08 09:18:03 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 1s. Last read position: chr22:43,172,450 INFO 2026-06-08 09:18:03 MarkDuplicates Tracking 40701 as yet unmatched pairs. 5506 records in RAM. INFO 2026-06-08 09:18:05 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:42s. Time for last 1,000,000: 1s. Last read position: chr22:50,219,421 INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 38558 as yet unmatched pairs. 3363 records in RAM. INFO 2026-06-08 09:18:06 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 1s. Last read position: chr22:50,530,422 INFO 2026-06-08 09:18:06 MarkDuplicates Tracking 36132 as yet unmatched pairs. 937 records in RAM. INFO 2026-06-08 09:18:08 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:46s. Time for last 1,000,000: 2s. Last read position: chrX:10,567,442 INFO 2026-06-08 09:18:08 MarkDuplicates Tracking 34096 as yet unmatched pairs. 30986 records in RAM. INFO 2026-06-08 09:18:10 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 1s. Last read position: chrX:23,783,348 INFO 2026-06-08 09:18:10 MarkDuplicates Tracking 33562 as yet unmatched pairs. 30449 records in RAM. INFO 2026-06-08 09:18:11 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 1s. Last read position: chrX:40,935,705 INFO 2026-06-08 09:18:11 MarkDuplicates Tracking 30465 as yet unmatched pairs. 27352 records in RAM. INFO 2026-06-08 09:18:13 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 1s. Last read position: chrX:47,212,838 INFO 2026-06-08 09:18:13 MarkDuplicates Tracking 29585 as yet unmatched pairs. 26472 records in RAM. INFO 2026-06-08 09:18:15 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 1s. Last read position: chrX:48,993,431 INFO 2026-06-08 09:18:15 MarkDuplicates Tracking 27181 as yet unmatched pairs. 24068 records in RAM. INFO 2026-06-08 09:18:16 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 1s. Last read position: chrX:53,431,584 INFO 2026-06-08 09:18:16 MarkDuplicates Tracking 25926 as yet unmatched pairs. 22813 records in RAM. INFO 2026-06-08 09:18:18 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:55s. Time for last 1,000,000: 1s. Last read position: chrX:64,190,329 INFO 2026-06-08 09:18:18 MarkDuplicates Tracking 23219 as yet unmatched pairs. 20106 records in RAM. INFO 2026-06-08 09:18:20 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:57s. Time for last 1,000,000: 1s. Last read position: chrX:71,384,952 INFO 2026-06-08 09:18:20 MarkDuplicates Tracking 21676 as yet unmatched pairs. 18562 records in RAM. INFO 2026-06-08 09:18:22 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 2s. Last read position: chrX:77,683,784 INFO 2026-06-08 09:18:22 MarkDuplicates Tracking 20440 as yet unmatched pairs. 17326 records in RAM. INFO 2026-06-08 09:18:24 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 1s. Last read position: chrX:100,633,529 INFO 2026-06-08 09:18:24 MarkDuplicates Tracking 18811 as yet unmatched pairs. 15697 records in RAM. INFO 2026-06-08 09:18:25 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:23:02s. Time for last 1,000,000: 1s. Last read position: chrX:106,849,251 INFO 2026-06-08 09:18:25 MarkDuplicates Tracking 16651 as yet unmatched pairs. 13537 records in RAM. INFO 2026-06-08 09:18:27 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:23:05s. Time for last 1,000,000: 2s. Last read position: chrX:119,589,820 INFO 2026-06-08 09:18:27 MarkDuplicates Tracking 15195 as yet unmatched pairs. 12081 records in RAM. INFO 2026-06-08 09:18:29 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 1s. Last read position: chrX:129,925,934 INFO 2026-06-08 09:18:29 MarkDuplicates Tracking 13567 as yet unmatched pairs. 10453 records in RAM. INFO 2026-06-08 09:18:30 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 1s. Last read position: chrX:147,912,284 INFO 2026-06-08 09:18:30 MarkDuplicates Tracking 13277 as yet unmatched pairs. 10162 records in RAM. INFO 2026-06-08 09:18:32 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:23:09s. Time for last 1,000,000: 1s. Last read position: chrX:153,720,872 INFO 2026-06-08 09:18:32 MarkDuplicates Tracking 10900 as yet unmatched pairs. 7785 records in RAM. INFO 2026-06-08 09:18:34 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:23:11s. Time for last 1,000,000: 1s. Last read position: chrX:154,350,977 INFO 2026-06-08 09:18:34 MarkDuplicates Tracking 8516 as yet unmatched pairs. 5401 records in RAM. INFO 2026-06-08 09:18:35 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:23:13s. Time for last 1,000,000: 1s. Last read position: chrX:154,368,026 INFO 2026-06-08 09:18:35 MarkDuplicates Tracking 8104 as yet unmatched pairs. 4989 records in RAM. INFO 2026-06-08 09:18:37 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 1s. Last read position: chrX:154,766,267 INFO 2026-06-08 09:18:37 MarkDuplicates Tracking 4307 as yet unmatched pairs. 1192 records in RAM. INFO 2026-06-08 09:18:38 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:23:15s. Time for last 1,000,000: 1s. Last read position: GL000220.1:136,317 INFO 2026-06-08 09:18:38 MarkDuplicates Tracking 1936 as yet unmatched pairs. 111 records in RAM. INFO 2026-06-08 09:18:39 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,080 INFO 2026-06-08 09:18:39 MarkDuplicates Tracking 44 as yet unmatched pairs. 30 records in RAM. INFO 2026-06-08 09:18:40 MarkDuplicates Read 639307074 records. 0 pairs never matched. INFO 2026-06-08 09:19:28 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141760; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:19:28 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 09:19:33 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 09:19:33 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:19:55 OpticalDuplicateFinder Large duplicate set. size = 1748 INFO 2026-06-08 09:19:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,644 INFO 2026-06-08 09:20:02 OpticalDuplicateFinder Large duplicate set. size = 1164 INFO 2026-06-08 09:20:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,487 INFO 2026-06-08 09:20:59 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 09:20:59 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:22:05 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 09:22:08 MarkDuplicates After generateDuplicateIndexes freeMemory: 204011304; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:22:08 MarkDuplicates Marking 340086269 records as duplicates. INFO 2026-06-08 09:22:08 MarkDuplicates Found 19689431 optical duplicate clusters. INFO 2026-06-08 09:22:08 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 09:22:25 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:22,118,368 INFO 2026-06-08 09:22:41 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 16s. Last read position: chr1:42,958,645 INFO 2026-06-08 09:22:57 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:48s. Time for last 10,000,000: 16s. Last read position: chr1:112,694,707 INFO 2026-06-08 09:23:13 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:04s. Time for last 10,000,000: 15s. Last read position: chr1:154,268,887 INFO 2026-06-08 09:23:30 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:21s. Time for last 10,000,000: 16s. Last read position: chr1:186,093,205 INFO 2026-06-08 09:23:46 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:38s. Time for last 10,000,000: 16s. Last read position: chr1:244,855,498 INFO 2026-06-08 09:24:02 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:53s. Time for last 10,000,000: 15s. Last read position: chr2:38,070,984 INFO 2026-06-08 09:24:19 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:10s. Time for last 10,000,000: 16s. Last read position: chr2:86,605,077 INFO 2026-06-08 09:24:35 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:27s. Time for last 10,000,000: 16s. Last read position: chr2:170,993,683 INFO 2026-06-08 09:24:52 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:43s. Time for last 10,000,000: 16s. Last read position: chr2:215,397,190 INFO 2026-06-08 09:25:07 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 15s. Last read position: chr2:241,463,392 INFO 2026-06-08 09:25:24 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:16s. Time for last 10,000,000: 17s. Last read position: chr3:49,116,583 INFO 2026-06-08 09:25:41 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:32s. Time for last 10,000,000: 16s. Last read position: chr3:127,018,287 INFO 2026-06-08 09:26:01 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:52s. Time for last 10,000,000: 19s. Last read position: chr3:195,883,237 INFO 2026-06-08 09:26:18 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:09s. Time for last 10,000,000: 17s. Last read position: chr4:70,831,580 INFO 2026-06-08 09:26:41 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:32s. Time for last 10,000,000: 22s. Last read position: chr5:1,814,354 INFO 2026-06-08 09:27:02 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:53s. Time for last 10,000,000: 20s. Last read position: chr5:112,878,724 INFO 2026-06-08 09:27:18 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:09s. Time for last 10,000,000: 16s. Last read position: chr5:150,407,306 INFO 2026-06-08 09:27:34 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:25s. Time for last 10,000,000: 15s. Last read position: chr6:7,230,130 INFO 2026-06-08 09:27:49 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:40s. Time for last 10,000,000: 15s. Last read position: chr6:32,179,890 INFO 2026-06-08 09:28:05 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:57s. Time for last 10,000,000: 16s. Last read position: chr6:85,615,046 INFO 2026-06-08 09:28:21 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:13s. Time for last 10,000,000: 16s. Last read position: chr6:167,946,888 INFO 2026-06-08 09:28:38 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:29s. Time for last 10,000,000: 16s. Last read position: chr7:56,051,901 INFO 2026-06-08 09:28:54 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:45s. Time for last 10,000,000: 15s. Last read position: chr7:100,995,154 INFO 2026-06-08 09:29:10 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:01s. Time for last 10,000,000: 16s. Last read position: chr7:127,707,566 INFO 2026-06-08 09:29:26 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:17s. Time for last 10,000,000: 16s. Last read position: chr8:22,416,264 INFO 2026-06-08 09:29:42 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:33s. Time for last 10,000,000: 15s. Last read position: chr8:94,671,611 INFO 2026-06-08 09:29:58 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:49s. Time for last 10,000,000: 15s. Last read position: chr8:143,859,471 INFO 2026-06-08 09:30:13 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:04s. Time for last 10,000,000: 15s. Last read position: chr8:144,054,569 INFO 2026-06-08 09:30:29 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:21s. Time for last 10,000,000: 16s. Last read position: chr9:92,314,652 INFO 2026-06-08 09:30:46 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:37s. Time for last 10,000,000: 16s. Last read position: chr9:131,459,184 INFO 2026-06-08 09:31:03 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:54s. Time for last 10,000,000: 17s. Last read position: chr10:37,953,101 INFO 2026-06-08 09:31:21 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:13s. Time for last 10,000,000: 18s. Last read position: chr10:99,956,682 INFO 2026-06-08 09:31:38 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:29s. Time for last 10,000,000: 16s. Last read position: chr11:1,249,270 INFO 2026-06-08 09:31:54 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:45s. Time for last 10,000,000: 15s. Last read position: chr11:57,803,676 INFO 2026-06-08 09:32:09 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:01s. Time for last 10,000,000: 15s. Last read position: chr11:66,526,737 INFO 2026-06-08 09:32:25 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:16s. Time for last 10,000,000: 15s. Last read position: chr11:118,506,263 INFO 2026-06-08 09:32:42 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:33s. Time for last 10,000,000: 16s. Last read position: chr12:13,213,688 INFO 2026-06-08 09:33:00 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:51s. Time for last 10,000,000: 18s. Last read position: chr12:56,104,777 INFO 2026-06-08 09:33:18 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:09s. Time for last 10,000,000: 17s. Last read position: chr12:106,340,994 INFO 2026-06-08 09:33:34 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 16s. Last read position: chr13:25,097,165 INFO 2026-06-08 09:33:51 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:42s. Time for last 10,000,000: 17s. Last read position: chr13:110,428,557 INFO 2026-06-08 09:34:08 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:59s. Time for last 10,000,000: 16s. Last read position: chr14:64,427,414 INFO 2026-06-08 09:34:25 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:16s. Time for last 10,000,000: 16s. Last read position: chr14:104,952,979 INFO 2026-06-08 09:34:43 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:35s. Time for last 10,000,000: 18s. Last read position: chr15:57,197,785 INFO 2026-06-08 09:35:07 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:58s. Time for last 10,000,000: 23s. Last read position: chr15:90,440,538 INFO 2026-06-08 09:35:30 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:22s. Time for last 10,000,000: 23s. Last read position: chr16:16,324,881 INFO 2026-06-08 09:35:51 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:42s. Time for last 10,000,000: 20s. Last read position: chr16:30,397,767 INFO 2026-06-08 09:36:13 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:04s. Time for last 10,000,000: 21s. Last read position: chr16:81,445,255 INFO 2026-06-08 09:36:33 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:24s. Time for last 10,000,000: 20s. Last read position: chr17:16,101,718 INFO 2026-06-08 09:36:49 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:40s. Time for last 10,000,000: 15s. Last read position: chr17:40,444,070 INFO 2026-06-08 09:37:06 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:57s. Time for last 10,000,000: 17s. Last read position: chr17:50,392,876 INFO 2026-06-08 09:37:21 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:13s. Time for last 10,000,000: 15s. Last read position: chr17:76,627,220 INFO 2026-06-08 09:37:37 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:28s. Time for last 10,000,000: 15s. Last read position: chr18:58,330,868 INFO 2026-06-08 09:37:53 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:44s. Time for last 10,000,000: 15s. Last read position: chr19:8,257,050 INFO 2026-06-08 09:38:08 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:00s. Time for last 10,000,000: 15s. Last read position: chr19:18,768,556 INFO 2026-06-08 09:38:24 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:15s. Time for last 10,000,000: 15s. Last read position: chr19:41,756,922 INFO 2026-06-08 09:38:43 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:34s. Time for last 10,000,000: 19s. Last read position: chr19:53,352,359 INFO 2026-06-08 09:39:03 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:54s. Time for last 10,000,000: 19s. Last read position: chr20:37,229,983 INFO 2026-06-08 09:39:25 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:16s. Time for last 10,000,000: 21s. Last read position: chr21:8,425,848 INFO 2026-06-08 09:39:42 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:34s. Time for last 10,000,000: 17s. Last read position: chr22:29,272,406 INFO 2026-06-08 09:40:01 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:52s. Time for last 10,000,000: 18s. Last read position: chrX:10,567,442 INFO 2026-06-08 09:40:18 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:09s. Time for last 10,000,000: 17s. Last read position: chrX:106,849,251 INFO 2026-06-08 09:40:36 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:18:27s. Time for last 10,000,000: 17s. Last read position: */* INFO 2026-06-08 09:40:41 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 09:40:41 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 09:40:41 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 09:40:41 MarkDuplicates Before output close freeMemory: 203966792; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:40:41 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 09:40:41 MarkDuplicates After output close freeMemory: 104212776; totalMemory: 134217728; maxMemory: 63585648640 [Mon Jun 08 09:40:41 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 45.34 minutes. Runtime.totalMemory()=134217728 ls: *cram: No such file or directory ls: *.crai: No such file or directory