.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/7017a13add5c36d400e680a5fa547c/.command.log
Size: 827 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/7017a13add5c36d400e680a5fa547c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/7017a13add5c36d400e680a5fa547c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/bc3a232737b9a17e6b9d3033c50af5/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/22aff6dd465513bc5b9df5d4d8d509/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory