Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/55bafb1d20a6afaba3ed2398497c54/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/ab1ecef568cb5d38abb03fb63db551/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/55bafb1d20a6afaba3ed2398497c54/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/46181f50f5c9d22d603ae1efa90e3e/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-12b72b-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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