Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ad5e6f7a2028e5b8ace91ed1987ac0/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/d103754e664733376332d5ff66ba06/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/d103754e664733376332d5ff66ba06/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory